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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RBFA is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
39.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
39.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
37.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
34.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
33.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
32.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
30.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
29.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
29.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
28.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
28.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
27.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
26.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
26.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
25.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
25.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
23.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
22.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
22.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
18.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
17.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
17.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
13.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RBFA is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.5
Number of samples
231
Samples
Sample
Description
TPM
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
616
Normal
1.2
525
Tumor
1.1
557
Tumor
1.1
1041
Tumor
1.0
313
Tumor
1.0
231
Tumor
0.9
145
Tumor
0.8
267
Tumor
0.8
755
Tumor
0.8
351
Tumor
0.8
124
Normal
0.8
883
Tumor
0.7
647
Tumor
0.7
393
Tumor
0.7
628
Normal
0.7
663
Tumor
0.7
127
Tumor
0.7
465
Tumor
0.7
464
Normal
0.6
745
Tumor
0.6
937
Tumor
0.6
1028
Normal
0.6
567
Tumor
0.6
1021
Tumor
0.6
426
Normal
0.6
665
Tumor
0.6
572
Normal
0.5
723
Tumor
0.5
128
Normal
0.5
925
Tumor
0.5
911
Tumor
0.5
1032
Normal
0.5
1013
Tumor
0.5
114
Normal
0.5
1022
Normal
0.5
636
Normal
0.5
111
Normal
0.5
558
Normal
0.5
171
Tumor
0.4
361
Tumor
0.4
363
Tumor
0.4
528
Normal
0.4
272
Normal
0.4
517
Tumor
0.4
112
Tumor
0.4
126
Normal
0.4
618
Normal
0.4
414
Normal
0.4
546
Normal
0.4
314
Normal
0.4
738
Normal
0.4
258
Normal
0.4
777
Tumor
0.4
392
Normal
0.4
913
Tumor
0.4
467
Tumor
0.4
686
Normal
0.4
573
Tumor
0.4
862
Normal
0.3
388
Normal
0.3
865
Tumor
0.3
386
Normal
0.3
714
Normal
0.3
394
Normal
0.3
536
Normal
0.3
746
Normal
0.3
1046
Normal
0.3
435
Tumor
0.3
664
Normal
0.3
685
Tumor
0.3
132
Normal
0.3
534
Normal
0.3
391
Tumor
0.3
262
Normal
0.3
627
Tumor
0.3
568
Normal
0.3
716
Normal
0.3
728
Normal
0.3
816
Normal
0.3
978
Normal
0.3
722
Normal
0.3
953
Tumor
0.3
648
Normal
0.3
642
Normal
0.3
423
Tumor
0.2
186
Normal
0.2
721
Tumor
0.2
396
Normal
0.2
615
Tumor
0.2
368
Normal
0.2
298
Normal
0.2
357
Tumor
0.2
564
Normal
0.2
1045
Tumor
0.2
698
Normal
0.2
327
Tumor
0.2
138
Normal
0.2
952
Normal
0.2
518
Normal
0.2
868
Normal
0.2
1027
Tumor
0.2
424
Normal
0.2
1031
Tumor
0.2
516
Normal
0.2
147
Tumor
0.2
727
Tumor
0.2
172
Normal
0.2
571
Tumor
0.2
278
Normal
0.2
1025
Tumor
0.2
422
Normal
0.2
232
Normal
0.2
1014
Normal
0.2
494
Normal
0.2
724
Normal
0.2
535
Tumor
0.2
786
Normal
0.2
362
Normal
0.2
867
Tumor
0.2
141
Tumor
0.1
864
Normal
0.1
162
Normal
0.1
1044
Normal
0.1
537
Tumor
0.1
311
Tumor
0.1
328
Normal
0.1
222
Normal
0.1
967
Tumor
0.1
123
Tumor
0.1
554
Normal
0.1
268
Normal
0.1
376
Normal
0.1
981
Tumor
0.1
666
Normal
0.1
851
Tumor
0.1
741
Tumor
0.1
574
Normal
0.1
943
Tumor
0.1
662
Normal
0.1
957
Tumor
0.1
1026
Normal
0.1
915
Tumor
0.1
366
Normal
0.1
553
Tumor
0.1
538
Normal
0.1
212
Normal
0.1
448
Normal
0.1
271
Tumor
0.1
113
Tumor
0.1
473
Tumor
0.1
635
Tumor
0.0
817
Tumor
0.0
951
Tumor
0.0
695
Tumor
0.0
873
Tumor
0.0
513
Tumor
0.0
353
Tumor
0.0
354
Normal
0.0
466
Normal
0.0
412
Normal
0.0
484
Normal
0.0
364
Normal
0.0
428
Normal
0.0
715
Tumor
0.0
641
Tumor
0.0
136
Normal
0.0
358
Normal
0.0
1042
Normal
0.0
956
Normal
0.0
284
Normal
0.0
421
Tumor
0.0
778
Normal
0.0
742
Normal
0.0
514
Normal
0.0
984
Normal
0.0
756
Normal
0.0
214
Normal
0.0
958
Normal
0.0
148
Normal
0.0
474
Normal
0.0
218
Normal
0.0
866
Normal
0.0
285
Tumor
-0.1
185
Tumor
-0.1
526
Normal
-0.1
462
Normal
-0.1
563
Tumor
-0.1
533
Tumor
-0.1
228
Normal
-0.1
857
Tumor
-0.1
195
Tumor
-0.1
312
Normal
-0.1
815
Tumor
-0.1
944
Normal
-0.1
483
Tumor
-0.1
977
Tumor
-0.1
914
Normal
-0.1
447
Tumor
-0.1
261
Tumor
-0.1
456
Normal
-0.1
416
Normal
-0.1
861
Tumor
-0.1
341
Tumor
-0.1
737
Tumor
-0.1
223
Tumor
-0.1
881
Tumor
-0.1
982
Normal
-0.1
187
Tumor
-0.1
286
Normal
-0.1
461
Tumor
-0.1
926
Normal
-0.1
161
Tumor
-0.1
852
Normal
-0.1
858
Normal
-0.1
387
Tumor
-0.1
523
Tumor
-0.1
785
Tumor
-0.1
196
Normal
-0.1
463
Tumor
-0.1
436
Normal
-0.2
352
Normal
-0.2
411
Tumor
-0.2
344
Normal
-0.2
617
Tumor
-0.2
356
Normal
-0.2
433
Tumor
-0.2
923
Tumor
-0.2
524
Normal
-0.2
824
Normal
-0.2
455
Tumor
-0.2
146
Normal
-0.2
375
Tumor
-0.2
1016
Normal
-0.2
472
Normal
-0.2
213
Tumor
-0.2
221
Tumor
-0.2
488
Normal
-0.2
427
Tumor
-0.2
863
Tumor
-0.2
823
Tumor
-0.2
445
Tumor
-0.2
451
Tumor
-0.2
954
Normal
-0.2
696
Normal
-0.2
257
Tumor
-0.2
191
Tumor
-0.2
415
Tumor
-0.2
452
Normal
-0.2
487
Tumor
-0.2
367
Tumor
-0.2
713
Tumor
-0.2
384
Normal
-0.2
355
Tumor
-0.3
188
Normal
-0.3
918
Normal
-0.3
224
Normal
-0.3
217
Tumor
-0.3
964
Normal
-0.3
965
Tumor
-0.3
743
Tumor
-0.3
492
Normal
-0.3
468
Normal
-0.3
697
Tumor
-0.3
916
Normal
-0.3
1015
Tumor
-0.3
342
Normal
-0.3
477
Tumor
-0.3
1043
Tumor
-0.3
672
Normal
-0.3
365
Tumor
-0.3
434
Normal
-0.3
125
Tumor
-0.3
493
Tumor
-0.4
963
Tumor
-0.4
968
Normal
-0.4
395
Tumor
-0.4
527
Tumor
-0.4
814
Normal
-0.4
882
Normal
-0.4
924
Normal
-0.4
142
Normal
-0.4
192
Normal
-0.4
446
Normal
-0.4
955
Tumor
-0.4
211
Tumor
-0.4
938
Normal
-0.4
515
Tumor
-0.4
877
Tumor
-0.4
878
Normal
-0.4
481
Tumor
-0.4
478
Normal
-0.4
277
Tumor
-0.5
922
Normal
-0.5
818
Normal
-0.5
976
Normal
-0.5
491
Tumor
-0.5
432
Normal
-0.5
874
Normal
-0.5
497
Tumor
-0.5
227
Tumor
-0.5
917
Tumor
-0.5
744
Normal
-0.5
383
Tumor
-0.5
813
Tumor
-0.5
975
Tumor
-0.5
413
Tumor
-0.5
912
Normal
-0.6
482
Normal
-0.6
884
Normal
-0.7
331
Tumor
-0.7
343
Tumor
-0.7
471
Tumor
-0.7
498
Normal
-0.7
444
Normal
-0.7
137
Tumor
-0.8
966
Normal
-0.8
431
Tumor
-0.8
671
Tumor
-0.9
283
Tumor
-0.9
425
Tumor
-1.0
443
Tumor
-1.0
385
Tumor
-1.0
921
Tumor
-1.0
983
Tumor
-1.1
545
Tumor
-1.5
135
Tumor
-1.5
661
Tumor
-1.6
131
Tumor
-2.3
332
Normal
-5.8
297
Tumor
-8.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
