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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
53.7
nTPM
HPA Brain:
69.7
nTPM
GTEx:
53.7
nTPM
FANTOM5:
60.7
Scaled Tags Per Million
Pig:
40.6
nTPM
Mouse:
64.0
nTPM
Allen mouse:
3.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
69.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 56.0
2411
Female, age 72, unknown
64.3
2219
Male, age 76, both hemispheres
61.6
1870
Female, age 42, unknown
60.3
2586
Male, age 75, left hemisphere
58.8
1833
Male, age 53, unknown
58.0
2666
Male, age 74, left hemisphere
56.1
1827
Male, age 72, unknown
54.6
1830
Male, age 51, unknown
53.8
2828
Female, age 72, unknown
49.7
2019
Male, age 18, unknown
42.6
Dorsal raphe nucleus nTPM: 64.4
2298
Female, age 72, unknown
73.3
2047
Male, age 72, unknown
72.0
1828
Male, age 53, unknown
64.8
2016
Female, age 72, unknown
58.3
2750
Male, age 76, both hemispheres
53.6
Inferior colliculus nTPM: 57.0
2849
Male, age 72, unknown
59.0
1848
Female, age 42, unknown
58.2
2097
Female, age 72, unknown
57.5
1890
Male, age 53, unknown
53.4
Median raphe nucleus nTPM: 66.5
2220
Male, age 76, midline
66.5
Periaquaductal grey, anterior nTPM: 57.9
1947
Male, age 18, unknown
67.9
1795
Male, age 51, unknown
55.9
2502
Female, age 75, unknown
49.8
Periaquaductal grey, dorsal nTPM: 56.6
1840
Male, age 53, unknown
67.0
2850
Male, age 76, both hemispheres
60.9
2464
Female, age 72, unknown
50.6
1831
Male, age 72, unknown
47.8
Periaquaductal grey, lateral nTPM: 53.8
2053
Male, age 18, unknown
54.8
2140
Male, age 76, both hemispheres
53.9
2272
Male, age 74, both hemispheres
52.7
Pretectal area nTPM: 57.1
2825
Male, age 18, unknown
66.9
2224
Female, age 72, unknown
65.0
2407
Male, age 75, both hemispheres
59.5
1944
Female, age 72, unknown
56.4
2273
Male, age 74, both hemispheres
55.9
2667
Female, age 75, unknown
55.9
1815
Male, age 53, unknown
55.6
1817
Female, age 42, unknown
54.9
1816
Male, age 51, unknown
54.5
2007
Male, age 72, unknown
52.1
2316
Male, age 76, right hemisphere
51.2
Red nucleus nTPM: 48.1
2725
Female, age 75, unknown
57.7
1821
Female, age 72, unknown
55.5
2769
Male, age 72, unknown
51.3
2584
Male, age 75, left hemisphere
50.9
1904
Male, age 53, unknown
49.8
2503
Female, age 72, unknown
48.7
1954
Female, age 42, unknown
47.8
1865
Male, age 51, unknown
47.5
2227
Male, age 72, unknown
47.3
2588
Male, age 74, left hemisphere
41.5
2785
Male, age 18, unknown
39.7
2823
Male, age 76, right hemisphere
39.1
Substantia nigra nTPM: 69.7
1916
Female, age 42, unknown
85.3
2241
Male, age 72, unknown
77.3
1851
Male, age 51, unknown
76.9
2699
Male, age 18, unknown
71.8
2665
Male, age 74, both hemispheres
69.4
2590
Female, age 75, unknown
69.2
2583
Male, age 75, right hemisphere
66.9
2409
Female, age 72, unknown
64.2
1889
Female, age 72, unknown
61.0
1941
Male, age 53, unknown
55.3
Superior colliculus nTPM: 54.2
2587
Male, age 74, left hemisphere
60.8
2261
Male, age 18, unknown
57.7
1839
Male, age 51, unknown
56.4
1796
Male, age 53, unknown
55.9
2664
Male, age 75, both hemispheres
53.8
2668
Female, age 75, unknown
52.7
2087
Female, age 72, unknown
52.1
1913
Female, age 42, unknown
51.2
1995
Male, age 72, unknown
51.1
1895
Male, age 76, right hemisphere
50.3
Ventral tegmental area nTPM: 66.1
2410
Female, age 72, unknown
74.6
1915
Female, age 42, unknown
71.2
2218
Male, age 76, both hemispheres
67.2
2021
Male, age 53, unknown
66.1
1942
Male, age 51, unknown
63.3
2223
Female, age 72, unknown
54.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
53.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 53.7
Samples: 139
Max nTPM: 89.9
Min nTPM: 21.9
Std nTPM: 13.3
Median nTPM: 52.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
89.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
87.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
84.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
83.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
83.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
80.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
75.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
74.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
73.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
72.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
72.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
72.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
71.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
70.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
70.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
70.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
70.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
70.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
70.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
68.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
68.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
68.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
67.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
67.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
67.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
67.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
67.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
67.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
66.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
65.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
64.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
64.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
64.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
63.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
63.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
63.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
62.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
62.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
62.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
62.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
61.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
61.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
60.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
60.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
60.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
60.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
60.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
58.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
58.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
58.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
57.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
57.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
56.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
56.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
56.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
56.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
56.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
56.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
55.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
55.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
55.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
55.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
55.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
54.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
54.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
54.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
54.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
53.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
53.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
52.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
52.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
52.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
52.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
52.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
52.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
52.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
51.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
51.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
51.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
51.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
50.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
50.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
49.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
49.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
48.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
48.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
47.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
46.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
46.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
46.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
45.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
45.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
45.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
45.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
45.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
45.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
44.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
44.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
44.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
43.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
43.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
43.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
43.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
43.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
43.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
43.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
43.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
43.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
42.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
42.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
42.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
42.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
42.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
42.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
41.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
41.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
40.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
40.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
40.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
37.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
37.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
37.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
37.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
37.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
36.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
36.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
36.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
35.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
35.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
35.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
34.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
34.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
33.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
33.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
32.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
32.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
31.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
29.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
21.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
64.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 64.0
Samples: 4
Max nTPM: 67.5
Min nTPM: 60.5
Sample A
Male
60.5
Sample B
Male
67.5
Sample C
Female
65.8
Sample D
Female
62.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.