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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
High
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
62.2
nTPM
HPA Brain:
70.6
nTPM
GTEx:
62.2
nTPM
FANTOM5:
79.9
Scaled Tags Per Million
Pig:
35.1
nTPM
Mouse:
63.4
nTPM
Allen mouse:
3.8
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA012863
Glial cells
High
Neuronal cells
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
70.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 62.9
1898
Male, age 80, left hemisphere
77.5
1855
Male, age 76, left hemisphere
73.7
2148
Female, age 91, left hemisphere
62.6
2621
Female, age 67, right hemisphere
62.4
1911
Female, age 85, right hemisphere
53.9
2529
Female, age 94, left hemisphere
47.4
Dentate gyrus nTPM: 67.0
2010
Male, age 76, both hemispheres
83.3
1927
Female, age 91, both hemispheres
80.2
2530
Female, age 94, left hemisphere
63.3
2528
Male, age 74, both hemispheres
60.6
2531
Female, age 67, both hemispheres
57.9
2246
Female, age 85, both hemispheres
56.9
Entorhinal gyrus nTPM: 52.7
2764
Male, age 80, right hemisphere
58.2
1787
Male, age 76, left hemisphere
57.2
2613
Female, age 94, left hemisphere
55.7
1938
Female, age 85, left hemisphere
54.8
2117
Female, age 91, right hemisphere
54.2
2686
Male, age 75, right hemisphere
35.8
Hippocampus, CA1 nTPM: 70.6
2045
Male, age 76, both hemispheres
90.7
2749
Male, age 80, left hemisphere
82.3
1873
Female, age 85, both hemispheres
82.1
2527
Male, age 74, both hemispheres
50.0
2082
Female, age 91, right hemisphere
48.1
Hippocampus, CA2 nTPM: 64.9
1892
Male, age 76, both hemispheres
99.0
1963
Male, age 80, left hemisphere
88.0
2437
Female, age 94, left hemisphere
56.9
1940
Female, age 85, left hemisphere
52.7
2113
Female, age 91, right hemisphere
48.0
2249
Male, age 74, both hemispheres
44.7
Hippocampus, CA3 nTPM: 63.5
2620
Female, age 94, left hemisphere
80.2
1867
Male, age 76, both hemispheres
78.6
1891
Female, age 85, both hemispheres
62.8
2137
Male, age 80, left hemisphere
56.8
2436
Male, age 74, both hemispheres
53.9
2861
Female, age 67, both hemispheres
48.8
Parahippocampal cortex nTPM: 51.1
1850
Male, age 80, both hemispheres
63.2
2018
Male, age 76, both hemispheres
55.8
2250
Female, age 67, right hemisphere
55.0
1990
Female, age 91, right hemisphere
54.3
1933
Female, age 85, both hemispheres
53.6
2693
Female, age 94, both hemispheres
50.7
2245
Female, age 91, both hemispheres
49.7
2532
Female, age 72, left hemisphere
48.4
2692
Male, age 74, both hemispheres
44.0
2622
Female, age 67, right hemisphere
36.1
Perirhinal gyrus nTPM: 63.3
1847
Female, age 91, left hemisphere
71.8
1794
Male, age 80, right hemisphere
64.7
2521
Female, age 94, right hemisphere
62.7
1841
Female, age 85, right hemisphere
60.7
2848
Male, age 76, right hemisphere
56.6
Subiculum nTPM: 52.8
2729
Female, age 91, right hemisphere
60.2
1977
Female, age 85, both hemispheres
54.0
2619
Male, age 74, both hemispheres
52.4
2042
Male, age 76, both hemispheres
51.9
1901
Male, age 80, both hemispheres
51.8
2438
Female, age 94, left hemisphere
46.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
62.2
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 62.2
Samples: 197
Max nTPM: 143.6
Min nTPM: 29.9
Std nTPM: 23.4
Median nTPM: 57.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
143.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
134.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
129.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
129.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
124.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
121.3
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
120.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
120.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
119.9
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
119.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
117.3
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
113.8
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
106.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
106.2
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
100.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
100.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
99.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
99.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
95.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
95.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
94.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
94.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
91.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
90.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
89.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
88.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
86.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
86.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
86.0
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
84.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
83.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
83.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
82.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
80.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
80.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
80.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
80.1
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
80.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
80.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
79.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
78.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
77.6
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
76.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
76.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
76.1
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
75.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
74.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
74.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
73.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
72.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
71.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
71.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
71.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
71.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
70.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
69.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
69.6
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
68.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
68.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
67.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
66.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
66.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
66.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
65.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
65.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
65.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
65.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
64.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
64.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
64.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
64.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
63.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
63.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
63.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
63.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
63.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
63.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
63.0
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
62.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
62.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
62.4
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
62.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
62.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
61.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
61.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
61.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
60.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
60.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
60.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
58.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
58.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
58.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
58.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
58.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
58.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
58.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
58.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
57.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
57.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
57.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
56.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
56.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
56.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
55.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
55.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
55.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
55.3
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
54.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
54.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
53.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
53.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
53.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
52.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
52.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
52.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
51.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
51.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
51.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
51.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
50.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
50.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
50.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
50.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
50.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
50.2
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
50.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
49.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
49.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
49.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
49.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
49.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
48.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
48.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
48.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
48.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
47.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
47.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
47.1
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
47.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
47.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
47.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
46.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
46.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
46.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
45.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
45.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
45.3
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
45.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
45.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
45.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
44.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
44.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
44.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
43.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
43.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
43.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
43.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
43.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
43.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
43.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
43.0
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
42.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
42.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
42.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
42.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
42.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
41.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
41.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
41.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
40.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
40.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
40.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
40.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
39.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
39.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
38.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
37.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
37.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
37.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
37.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
36.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
36.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
36.2
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
35.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
35.3
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
35.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
34.5
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
33.1
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
32.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
32.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
31.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
31.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
31.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
31.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
30.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
30.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
29.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
63.4
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 56.5
Samples: 4
Max nTPM: 62.9
Min nTPM: 52.4
Sample A
Male
52.4
Sample B
Male
56.2
Sample C
Female
54.4
Sample D
Female
62.9
Hippocampal formation nTPM: 63.4
Samples: 4
Max nTPM: 69.5
Min nTPM: 60.3
Sample A
Male
62.8
Sample B
Male
60.3
Sample C
Female
69.5
Sample D
Female
61.0
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.