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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TTI1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TTI1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.0
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
32.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.2
123
Tumor
1.2
391
Tumor
1.1
331
Tumor
1.1
965
Tumor
1.0
663
Tumor
1.0
351
Tumor
0.8
665
Tumor
0.8
865
Tumor
0.8
951
Tumor
0.8
877
Tumor
0.7
231
Tumor
0.7
724
Normal
0.7
433
Tumor
0.7
497
Tumor
0.6
277
Tumor
0.6
567
Tumor
0.6
112
Tumor
0.6
191
Tumor
0.6
443
Tumor
0.6
465
Tumor
0.6
473
Tumor
0.6
313
Tumor
0.6
685
Tumor
0.6
1021
Tumor
0.5
267
Tumor
0.5
385
Tumor
0.5
647
Tumor
0.5
743
Tumor
0.5
533
Tumor
0.5
446
Normal
0.5
983
Tumor
0.5
661
Tumor
0.5
463
Tumor
0.5
957
Tumor
0.5
445
Tumor
0.5
127
Tumor
0.5
435
Tumor
0.5
113
Tumor
0.4
393
Tumor
0.4
411
Tumor
0.4
937
Tumor
0.4
367
Tumor
0.4
387
Tumor
0.4
375
Tumor
0.4
671
Tumor
0.4
434
Normal
0.4
211
Tumor
0.4
925
Tumor
0.4
431
Tumor
0.4
257
Tumor
0.3
715
Tumor
0.3
147
Tumor
0.3
571
Tumor
0.3
171
Tumor
0.3
427
Tumor
0.3
535
Tumor
0.3
161
Tumor
0.3
187
Tumor
0.3
283
Tumor
0.3
444
Normal
0.3
451
Tumor
0.3
432
Normal
0.3
365
Tumor
0.3
125
Tumor
0.3
777
Tumor
0.3
537
Tumor
0.3
341
Tumor
0.3
141
Tumor
0.3
361
Tumor
0.3
213
Tumor
0.3
913
Tumor
0.3
557
Tumor
0.3
221
Tumor
0.3
343
Tumor
0.3
1015
Tumor
0.2
195
Tumor
0.2
977
Tumor
0.2
467
Tumor
0.2
131
Tumor
0.2
517
Tumor
0.2
355
Tumor
0.2
815
Tumor
0.2
727
Tumor
0.2
981
Tumor
0.2
1027
Tumor
0.2
357
Tumor
0.2
491
Tumor
0.2
217
Tumor
0.2
366
Normal
0.2
137
Tumor
0.2
297
Tumor
0.2
635
Tumor
0.2
383
Tumor
0.2
745
Tumor
0.2
413
Tumor
0.2
332
Normal
0.2
285
Tumor
0.2
851
Tumor
0.2
425
Tumor
0.2
975
Tumor
0.2
813
Tumor
0.1
353
Tumor
0.1
921
Tumor
0.1
395
Tumor
0.1
573
Tumor
0.1
428
Normal
0.1
923
Tumor
0.1
883
Tumor
0.1
477
Tumor
0.1
943
Tumor
0.1
384
Normal
0.1
363
Tumor
0.1
915
Tumor
0.1
311
Tumor
0.1
648
Normal
0.1
1031
Tumor
0.1
493
Tumor
0.1
421
Tumor
0.1
368
Normal
0.1
487
Tumor
0.1
483
Tumor
0.1
362
Normal
0.0
358
Normal
0.0
376
Normal
0.0
741
Tumor
0.0
911
Tumor
0.0
354
Normal
0.0
1043
Tumor
0.0
867
Tumor
0.0
666
Normal
0.0
132
Normal
0.0
423
Tumor
0.0
342
Normal
0.0
672
Normal
0.0
138
Normal
0.0
1045
Tumor
0.0
261
Tumor
0.0
145
Tumor
0.0
881
Tumor
0.0
563
Tumor
0.0
527
Tumor
0.0
415
Tumor
0.0
967
Tumor
-0.1
136
Normal
-0.1
1025
Tumor
-0.1
352
Normal
-0.1
534
Normal
-0.1
857
Tumor
-0.1
641
Tumor
-0.1
737
Tumor
-0.1
388
Normal
-0.1
128
Normal
-0.1
953
Tumor
-0.1
271
Tumor
-0.1
863
Tumor
-0.1
222
Normal
-0.1
424
Normal
-0.1
188
Normal
-0.1
545
Tumor
-0.1
664
Normal
-0.1
662
Normal
-0.1
278
Normal
-0.1
192
Normal
-0.1
196
Normal
-0.1
861
Tumor
-0.1
695
Tumor
-0.1
223
Tumor
-0.1
126
Normal
-0.1
814
Normal
-0.1
268
Normal
-0.1
713
Tumor
-0.1
185
Tumor
-0.1
963
Tumor
-0.1
344
Normal
-0.1
697
Tumor
-0.1
414
Normal
-0.1
426
Normal
-0.1
135
Tumor
-0.1
1041
Tumor
-0.1
286
Normal
-0.1
284
Normal
-0.2
978
Normal
-0.2
873
Tumor
-0.2
392
Normal
-0.2
481
Tumor
-0.2
386
Normal
-0.2
232
Normal
-0.2
312
Normal
-0.2
214
Normal
-0.2
272
Normal
-0.2
755
Tumor
-0.2
114
Normal
-0.2
955
Tumor
-0.2
482
Normal
-0.2
468
Normal
-0.2
314
Normal
-0.2
224
Normal
-0.2
455
Tumor
-0.2
728
Normal
-0.2
142
Normal
-0.2
258
Normal
-0.2
564
Normal
-0.2
1028
Normal
-0.2
148
Normal
-0.2
464
Normal
-0.2
394
Normal
-0.2
298
Normal
-0.2
1016
Normal
-0.2
1022
Normal
-0.2
262
Normal
-0.2
868
Normal
-0.2
228
Normal
-0.2
422
Normal
-0.2
523
Tumor
-0.2
111
Normal
-0.2
723
Tumor
-0.2
212
Normal
-0.2
746
Normal
-0.2
528
Normal
-0.3
786
Normal
-0.3
146
Normal
-0.3
436
Normal
-0.3
396
Normal
-0.3
1032
Normal
-0.3
466
Normal
-0.3
526
Normal
-0.3
968
Normal
-0.3
186
Normal
-0.3
574
Normal
-0.3
964
Normal
-0.3
124
Normal
-0.3
1046
Normal
-0.3
984
Normal
-0.3
546
Normal
-0.3
966
Normal
-0.3
742
Normal
-0.3
447
Tumor
-0.3
864
Normal
-0.3
721
Tumor
-0.3
513
Tumor
-0.3
874
Normal
-0.3
471
Tumor
-0.3
917
Tumor
-0.3
356
Normal
-0.3
525
Tumor
-0.3
456
Normal
-0.3
958
Normal
-0.3
862
Normal
-0.3
756
Normal
-0.3
1026
Normal
-0.3
478
Normal
-0.3
615
Tumor
-0.3
627
Tumor
-0.3
823
Tumor
-0.3
1042
Normal
-0.3
954
Normal
-0.3
461
Tumor
-0.3
882
Normal
-0.4
926
Normal
-0.4
698
Normal
-0.4
982
Normal
-0.4
1014
Normal
-0.4
617
Tumor
-0.4
227
Tumor
-0.4
976
Normal
-0.4
172
Normal
-0.4
452
Normal
-0.4
944
Normal
-0.4
416
Normal
-0.4
514
Normal
-0.4
536
Normal
-0.4
474
Normal
-0.4
916
Normal
-0.4
686
Normal
-0.4
558
Normal
-0.4
364
Normal
-0.4
912
Normal
-0.4
218
Normal
-0.4
866
Normal
-0.4
938
Normal
-0.4
618
Normal
-0.4
553
Tumor
-0.4
817
Tumor
-0.4
162
Normal
-0.4
448
Normal
-0.4
696
Normal
-0.4
472
Normal
-0.4
914
Normal
-0.4
918
Normal
-0.4
738
Normal
-0.4
554
Normal
-0.4
412
Normal
-0.4
714
Normal
-0.4
744
Normal
-0.4
956
Normal
-0.4
516
Normal
-0.5
884
Normal
-0.5
568
Normal
-0.5
636
Normal
-0.5
722
Normal
-0.5
492
Normal
-0.5
498
Normal
-0.5
484
Normal
-0.5
515
Tumor
-0.5
818
Normal
-0.5
952
Normal
-0.5
488
Normal
-0.5
785
Tumor
-0.5
716
Normal
-0.5
328
Normal
-0.5
538
Normal
-0.5
572
Normal
-0.5
462
Normal
-0.5
852
Normal
-0.5
924
Normal
-0.5
1044
Normal
-0.5
858
Normal
-0.5
922
Normal
-0.5
518
Normal
-0.5
494
Normal
-0.5
642
Normal
-0.6
824
Normal
-0.6
778
Normal
-0.6
327
Tumor
-0.6
524
Normal
-0.7
816
Normal
-0.7
878
Normal
-0.8
616
Normal
-0.8
628
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
