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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TM9SF4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
71.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
68.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
68.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
63.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
55.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
53.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
50.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
48.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
47.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
47.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
47.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
47.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
47.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
46.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
45.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
45.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
45.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
44.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
43.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
43.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
43.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
43.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
42.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
42.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
40.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
39.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
39.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
39.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
38.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
37.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
37.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
37.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
35.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
34.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
34.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
34.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
33.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
33.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
32.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
32.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
32.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
31.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
31.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
31.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
30.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
30.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
30.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
30.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
30.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
29.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
29.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
27.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
26.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
24.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
22.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
20.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
20.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TM9SF4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.8
Number of samples
231
Samples
Sample
Description
TPM
DO50844
0 years, male, NA, stage:4, alive, 300 days
72.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
55.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
52.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
50.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
45.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
41.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
39.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
38.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
36.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
36.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
35.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
35.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
34.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
33.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
33.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
32.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
32.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
32.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
32.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
31.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
31.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
31.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
30.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
30.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
29.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
29.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
29.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
29.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
29.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
28.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
27.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
23.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
23.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
22.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
1.2
1013
Tumor
1.1
445
Tumor
1.1
743
Tumor
1.0
1027
Tumor
1.0
533
Tumor
1.0
285
Tumor
1.0
913
Tumor
1.0
727
Tumor
0.9
527
Tumor
0.9
647
Tumor
0.9
221
Tumor
0.9
525
Tumor
0.9
983
Tumor
0.8
685
Tumor
0.8
963
Tumor
0.8
967
Tumor
0.8
851
Tumor
0.7
545
Tumor
0.7
965
Tumor
0.7
435
Tumor
0.7
815
Tumor
0.7
471
Tumor
0.7
411
Tumor
0.7
267
Tumor
0.7
641
Tumor
0.7
261
Tumor
0.7
567
Tumor
0.7
937
Tumor
0.6
427
Tumor
0.6
745
Tumor
0.6
537
Tumor
0.6
1041
Tumor
0.6
911
Tumor
0.6
921
Tumor
0.6
227
Tumor
0.6
535
Tumor
0.6
1021
Tumor
0.6
523
Tumor
0.6
257
Tumor
0.6
557
Tumor
0.6
813
Tumor
0.6
573
Tumor
0.5
171
Tumor
0.5
271
Tumor
0.5
217
Tumor
0.5
724
Normal
0.5
327
Tumor
0.5
923
Tumor
0.5
451
Tumor
0.5
497
Tumor
0.5
953
Tumor
0.5
881
Tumor
0.4
483
Tumor
0.4
123
Tumor
0.4
491
Tumor
0.4
883
Tumor
0.4
671
Tumor
0.4
975
Tumor
0.4
463
Tumor
0.4
517
Tumor
0.4
357
Tumor
0.4
331
Tumor
0.4
665
Tumor
0.4
695
Tumor
0.4
433
Tumor
0.4
277
Tumor
0.4
487
Tumor
0.4
191
Tumor
0.3
125
Tumor
0.3
713
Tumor
0.3
755
Tumor
0.3
873
Tumor
0.3
697
Tumor
0.3
395
Tumor
0.3
635
Tumor
0.3
877
Tumor
0.3
1015
Tumor
0.3
223
Tumor
0.3
977
Tumor
0.3
661
Tumor
0.3
553
Tumor
0.3
367
Tumor
0.3
861
Tumor
0.3
211
Tumor
0.3
1031
Tumor
0.3
571
Tumor
0.3
391
Tumor
0.3
663
Tumor
0.2
817
Tumor
0.2
385
Tumor
0.2
425
Tumor
0.2
213
Tumor
0.2
147
Tumor
0.2
113
Tumor
0.2
387
Tumor
0.2
741
Tumor
0.2
617
Tumor
0.2
814
Normal
0.2
187
Tumor
0.2
865
Tumor
0.2
127
Tumor
0.2
615
Tumor
0.2
361
Tumor
0.2
1043
Tumor
0.2
313
Tumor
0.1
1025
Tumor
0.1
473
Tumor
0.1
297
Tumor
0.1
343
Tumor
0.1
413
Tumor
0.1
917
Tumor
0.1
477
Tumor
0.1
112
Tumor
0.1
195
Tumor
0.1
1045
Tumor
0.1
431
Tumor
0.1
915
Tumor
0.1
131
Tumor
0.1
721
Tumor
0.1
145
Tumor
0.1
515
Tumor
0.1
283
Tumor
0.1
355
Tumor
0.1
141
Tumor
0.0
447
Tumor
0.0
375
Tumor
0.0
467
Tumor
0.0
368
Normal
0.0
823
Tumor
0.0
526
Normal
0.0
524
Normal
0.0
383
Tumor
0.0
785
Tumor
0.0
737
Tumor
0.0
393
Tumor
0.0
185
Tumor
0.0
863
Tumor
0.0
443
Tumor
0.0
461
Tumor
0.0
363
Tumor
0.0
161
Tumor
0.0
231
Tumor
0.0
262
Normal
0.0
857
Tumor
0.0
465
Tumor
0.0
232
Normal
0.0
925
Tumor
0.0
341
Tumor
-0.1
353
Tumor
-0.1
365
Tumor
-0.1
951
Tumor
-0.1
421
Tumor
-0.1
558
Normal
-0.1
777
Tumor
-0.1
493
Tumor
-0.1
481
Tumor
-0.1
563
Tumor
-0.1
218
Normal
-0.1
536
Normal
-0.1
968
Normal
-0.1
964
Normal
-0.1
423
Tumor
-0.1
958
Normal
-0.1
728
Normal
-0.1
514
Normal
-0.1
518
Normal
-0.1
462
Normal
-0.2
957
Tumor
-0.2
124
Normal
-0.2
284
Normal
-0.2
966
Normal
-0.2
978
Normal
-0.2
142
Normal
-0.2
434
Normal
-0.2
212
Normal
-0.2
344
Normal
-0.2
286
Normal
-0.2
981
Tumor
-0.2
636
Normal
-0.2
572
Normal
-0.2
128
Normal
-0.2
564
Normal
-0.2
627
Tumor
-0.2
696
Normal
-0.2
1028
Normal
-0.2
868
Normal
-0.2
912
Normal
-0.2
114
Normal
-0.2
188
Normal
-0.2
268
Normal
-0.2
982
Normal
-0.2
715
Tumor
-0.2
686
Normal
-0.2
662
Normal
-0.2
278
Normal
-0.2
852
Normal
-0.2
884
Normal
-0.2
984
Normal
-0.2
474
Normal
-0.2
111
Normal
-0.2
311
Tumor
-0.2
738
Normal
-0.2
867
Tumor
-0.2
568
Normal
-0.3
352
Normal
-0.3
214
Normal
-0.3
415
Tumor
-0.3
616
Normal
-0.3
494
Normal
-0.3
722
Normal
-0.3
328
Normal
-0.3
228
Normal
-0.3
648
Normal
-0.3
618
Normal
-0.3
723
Tumor
-0.3
126
Normal
-0.3
258
Normal
-0.3
414
Normal
-0.3
356
Normal
-0.3
882
Normal
-0.3
314
Normal
-0.3
358
Normal
-0.3
412
Normal
-0.3
742
Normal
-0.3
714
Normal
-0.3
224
Normal
-0.3
534
Normal
-0.3
914
Normal
-0.3
1014
Normal
-0.3
332
Normal
-0.3
943
Tumor
-0.3
554
Normal
-0.3
976
Normal
-0.3
922
Normal
-0.3
172
Normal
-0.3
492
Normal
-0.3
482
Normal
-0.3
528
Normal
-0.3
664
Normal
-0.3
422
Normal
-0.3
513
Tumor
-0.3
464
Normal
-0.3
574
Normal
-0.3
642
Normal
-0.3
384
Normal
-0.3
1016
Normal
-0.3
488
Normal
-0.3
424
Normal
-0.3
628
Normal
-0.3
918
Normal
-0.3
1042
Normal
-0.3
1044
Normal
-0.3
135
Tumor
-0.3
944
Normal
-0.3
448
Normal
-0.3
426
Normal
-0.3
362
Normal
-0.3
916
Normal
-0.3
926
Normal
-0.3
468
Normal
-0.3
162
Normal
-0.3
416
Normal
-0.3
786
Normal
-0.3
364
Normal
-0.3
955
Tumor
-0.3
952
Normal
-0.3
472
Normal
-0.3
272
Normal
-0.4
376
Normal
-0.4
672
Normal
-0.4
148
Normal
-0.4
354
Normal
-0.4
516
Normal
-0.4
222
Normal
-0.4
816
Normal
-0.4
366
Normal
-0.4
858
Normal
-0.4
428
Normal
-0.4
546
Normal
-0.4
666
Normal
-0.4
455
Tumor
-0.4
446
Normal
-0.4
756
Normal
-0.4
138
Normal
-0.4
396
Normal
-0.4
452
Normal
-0.4
192
Normal
-0.4
466
Normal
-0.4
136
Normal
-0.4
478
Normal
-0.4
716
Normal
-0.4
824
Normal
-0.4
498
Normal
-0.4
436
Normal
-0.4
196
Normal
-0.4
1032
Normal
-0.4
744
Normal
-0.4
484
Normal
-0.4
392
Normal
-0.4
538
Normal
-0.4
1046
Normal
-0.4
312
Normal
-0.4
342
Normal
-0.4
938
Normal
-0.4
778
Normal
-0.4
956
Normal
-0.4
818
Normal
-0.4
864
Normal
-0.4
866
Normal
-0.5
432
Normal
-0.5
878
Normal
-0.5
954
Normal
-0.5
298
Normal
-0.5
132
Normal
-0.5
456
Normal
-0.5
862
Normal
-0.5
394
Normal
-0.5
386
Normal
-0.5
1026
Normal
-0.5
444
Normal
-0.5
698
Normal
-0.5
137
Tumor
-0.5
1022
Normal
-0.5
746
Normal
-0.5
186
Normal
-0.5
924
Normal
-0.5
874
Normal
-0.5
146
Normal
-0.5
388
Normal
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
