We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
91.4
Sample id
Sample description
nTPM
Amygdala nTPM: 11.7
2514
Male, age 75, right hemisphere
31.2
1987
Female, age 91, left hemisphere
14.1
2517
Female, age 94, left hemisphere
8.1
2695
Female, age 67, right hemisphere
4.3
2814
Male, age 76, right hemisphere
0.8
Basal amygdala nTPM: 43.8
2243
Female, age 91, right hemisphere
206.2
2609
Male, age 75, right hemisphere
30.0
2110
Male, age 80, left hemisphere
11.9
2685
Female, age 94, left hemisphere
7.2
2827
Female, age 67, right hemisphere
4.3
1955
Male, age 76, both hemispheres
3.3
Central amygdala nTPM: 8.5
2239
Male, age 80, left hemisphere
20.3
2826
Female, age 94, left hemisphere
11.3
2515
Male, age 75, right hemisphere
6.1
2701
Female, age 91, right hemisphere
3.7
1905
Male, age 76, both hemispheres
1.1
Corticomedial amygdala nTPM: 91.4
2829
Male, age 80, left hemisphere
258.6
2242
Female, age 91, right hemisphere
218.5
2428
Male, age 75, right hemisphere
45.8
2429
Female, age 94, left hemisphere
13.6
2535
Female, age 67, right hemisphere
6.3
2240
Male, age 76, both hemispheres
5.5
Lateral amygdala nTPM: 8.6
2534
Female, age 94, left hemisphere
16.8
2256
Male, age 80, left hemisphere
10.0
1883
Male, age 76, both hemispheres
7.1
2516
Male, age 75, right hemisphere
6.7
2830
Female, age 67, right hemisphere
5.5
2255
Female, age 91, right hemisphere
5.4
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
10.7
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 10.7
Samples: 152
Max nTPM: 119.1
Min nTPM: 0.0
Std nTPM: 15.7
Median nTPM: 5.2
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
119.1
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
81.8
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
65.1
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
62.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
57.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
53.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
41.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
39.4
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
34.1
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
33.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
32.9
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
31.0
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
30.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
28.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
23.3
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
23.2
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
22.1
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
21.8
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
21.5
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
21.3
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
21.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
21.0
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
18.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
18.4
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
17.5
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
16.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
16.0
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
15.3
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
15.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
15.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
14.1
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
13.4
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
13.2
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
12.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
12.8
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
12.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
12.6
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
12.1
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
11.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
11.5
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
11.5
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
11.5
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
11.1
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
11.1
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
11.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
10.3
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
10.1
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
10.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
9.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
9.2
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
9.0
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
8.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
8.3
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
7.9
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
7.8
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
7.6
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
7.6
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
7.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
7.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
7.1
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
7.0
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
6.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
6.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
6.6
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
6.5
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
6.4
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
6.3
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
6.1
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
6.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
5.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
5.7
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
5.7
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
5.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
5.5
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
5.5
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
5.3
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
5.2
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
5.2
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
5.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
5.0
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
4.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
4.5
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
4.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
4.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
4.3
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
4.3
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
4.2
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
4.2
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
4.1
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
4.1
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
4.1
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
4.1
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
4.0
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
4.0
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
3.9
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
3.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
3.8
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
3.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
3.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
3.7
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
3.7
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
3.6
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
3.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
3.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
3.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
3.4
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
3.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
3.3
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
3.3
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
3.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
3.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
3.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
3.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
2.8
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
2.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
2.6
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
2.5
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
2.3
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
2.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
2.3
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
2.2
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
2.2
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
2.1
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
1.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
1.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
1.8
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
1.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
1.6
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
1.6
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
1.6
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
1.5
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
1.4
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
1.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
1.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
1.2
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
1.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
1.1
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
0.9
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
0.8
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
0.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
0.7
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
0.7
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
0.7
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
0.6
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
0.5
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
0.5
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
0.5
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
0.4
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
0.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
0.3
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
0.3
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
0.0
Show allShow less
AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.1
Mouse sample
Sample description
nTPM
Amygdala nTPM: 26.1
Samples: 4
Max nTPM: 31.6
Min nTPM: 23.8
Sample A
Male
23.8
Sample B
Male
24.3
Sample C
Female
31.6
Sample D
Female
24.6
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
