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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFAF5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
4.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.6
615
Tumor
1.1
465
Tumor
1.1
123
Tumor
1.0
361
Tumor
0.9
571
Tumor
0.8
393
Tumor
0.7
537
Tumor
0.7
452
Normal
0.7
411
Tumor
0.7
695
Tumor
0.7
513
Tumor
0.6
365
Tumor
0.6
491
Tumor
0.6
436
Normal
0.6
171
Tumor
0.5
868
Normal
0.5
953
Tumor
0.5
394
Normal
0.5
851
Tumor
0.5
665
Tumor
0.5
515
Tumor
0.5
1041
Tumor
0.5
137
Tumor
0.5
431
Tumor
0.4
862
Normal
0.4
145
Tumor
0.4
392
Normal
0.4
863
Tumor
0.4
785
Tumor
0.4
526
Normal
0.4
127
Tumor
0.4
564
Normal
0.4
648
Normal
0.4
1027
Tumor
0.4
312
Normal
0.4
483
Tumor
0.4
172
Normal
0.4
1013
Tumor
0.4
261
Tumor
0.4
745
Tumor
0.4
477
Tumor
0.4
258
Normal
0.3
1015
Tumor
0.3
1043
Tumor
0.3
328
Normal
0.3
432
Normal
0.3
867
Tumor
0.3
186
Normal
0.3
222
Normal
0.3
113
Tumor
0.3
232
Normal
0.3
912
Normal
0.3
755
Tumor
0.3
756
Normal
0.3
227
Tumor
0.3
487
Tumor
0.3
642
Normal
0.3
141
Tumor
0.3
423
Tumor
0.3
738
Normal
0.3
824
Normal
0.3
267
Tumor
0.3
546
Normal
0.3
864
Normal
0.3
616
Normal
0.3
314
Normal
0.3
162
Normal
0.3
866
Normal
0.3
114
Normal
0.3
514
Normal
0.3
786
Normal
0.3
574
Normal
0.3
132
Normal
0.3
858
Normal
0.3
534
Normal
0.3
568
Normal
0.3
518
Normal
0.3
111
Normal
0.3
911
Tumor
0.3
466
Normal
0.3
818
Normal
0.3
446
Normal
0.3
714
Normal
0.3
196
Normal
0.2
368
Normal
0.2
636
Normal
0.2
112
Tumor
0.2
664
Normal
0.2
517
Tumor
0.2
723
Tumor
0.2
356
Normal
0.2
874
Normal
0.2
981
Tumor
0.2
722
Normal
0.2
125
Tumor
0.2
882
Normal
0.2
852
Normal
0.2
445
Tumor
0.2
1045
Tumor
0.2
221
Tumor
0.2
148
Normal
0.2
915
Tumor
0.2
618
Normal
0.2
332
Normal
0.2
944
Normal
0.2
396
Normal
0.2
462
Normal
0.2
964
Normal
0.2
416
Normal
0.2
482
Normal
0.2
191
Tumor
0.2
557
Tumor
0.2
666
Normal
0.2
572
Normal
0.2
746
Normal
0.2
464
Normal
0.2
126
Normal
0.2
218
Normal
0.2
414
Normal
0.2
922
Normal
0.2
278
Normal
0.2
686
Normal
0.2
277
Tumor
0.2
214
Normal
0.2
567
Tumor
0.2
1046
Normal
0.2
376
Normal
0.2
484
Normal
0.2
954
Normal
0.2
428
Normal
0.2
388
Normal
0.2
298
Normal
0.2
364
Normal
0.2
884
Normal
0.1
647
Tumor
0.1
124
Normal
0.1
362
Normal
0.1
563
Tumor
0.1
1022
Normal
0.1
1016
Normal
0.1
494
Normal
0.1
262
Normal
0.1
135
Tumor
0.1
468
Normal
0.1
924
Normal
0.1
286
Normal
0.1
696
Normal
0.1
451
Tumor
0.1
528
Normal
0.1
472
Normal
0.1
878
Normal
0.1
138
Normal
0.1
558
Normal
0.1
327
Tumor
0.1
816
Normal
0.1
366
Normal
0.1
523
Tumor
0.1
272
Normal
0.1
1032
Normal
0.1
142
Normal
0.1
728
Normal
0.1
671
Tumor
0.1
1025
Tumor
0.1
926
Normal
0.1
128
Normal
0.1
1026
Normal
0.1
412
Normal
0.1
778
Normal
0.1
967
Tumor
0.1
628
Normal
0.1
268
Normal
0.1
448
Normal
0.1
952
Normal
0.1
386
Normal
0.1
958
Normal
0.1
823
Tumor
0.1
524
Normal
0.1
663
Tumor
0.1
978
Normal
0.1
357
Tumor
0.1
662
Normal
0.1
716
Normal
0.1
424
Normal
0.1
456
Normal
0.1
742
Normal
0.1
1042
Normal
0.1
1028
Normal
0.1
918
Normal
0.1
968
Normal
0.1
351
Tumor
0.1
873
Tumor
0.1
136
Normal
0.1
713
Tumor
0.1
355
Tumor
0.1
488
Normal
0.1
434
Normal
0.0
883
Tumor
0.0
481
Tumor
0.0
257
Tumor
0.0
433
Tumor
0.0
426
Normal
0.0
554
Normal
0.0
195
Tumor
0.0
217
Tumor
0.0
147
Tumor
0.0
498
Normal
0.0
231
Tumor
0.0
161
Tumor
0.0
641
Tumor
0.0
478
Normal
0.0
984
Normal
0.0
395
Tumor
0.0
444
Normal
0.0
937
Tumor
0.0
516
Normal
0.0
285
Tumor
0.0
461
Tumor
0.0
698
Normal
0.0
353
Tumor
0.0
741
Tumor
0.0
955
Tumor
0.0
982
Normal
0.0
187
Tumor
0.0
976
Normal
0.0
914
Normal
0.0
857
Tumor
0.0
672
Normal
0.0
363
Tumor
0.0
777
Tumor
0.0
313
Tumor
0.0
223
Tumor
0.0
358
Normal
0.0
271
Tumor
0.0
228
Normal
0.0
146
Normal
0.0
721
Tumor
-0.1
188
Normal
-0.1
715
Tumor
-0.1
538
Normal
-0.1
861
Tumor
-0.1
727
Tumor
-0.1
474
Normal
-0.1
473
Tumor
-0.1
435
Tumor
-0.1
344
Normal
-0.1
938
Normal
-0.1
1044
Normal
-0.1
455
Tumor
-0.1
525
Tumor
-0.1
956
Normal
-0.1
916
Normal
-0.1
877
Tumor
-0.1
224
Normal
-0.1
384
Normal
-0.1
422
Normal
-0.1
744
Normal
-0.1
463
Tumor
-0.1
375
Tumor
-0.1
966
Normal
-0.2
471
Tumor
-0.2
635
Tumor
-0.2
367
Tumor
-0.2
957
Tumor
-0.2
553
Tumor
-0.2
815
Tumor
-0.2
1031
Tumor
-0.2
387
Tumor
-0.2
913
Tumor
-0.2
963
Tumor
-0.2
284
Normal
-0.2
697
Tumor
-0.2
977
Tumor
-0.2
212
Normal
-0.2
467
Tumor
-0.2
415
Tumor
-0.2
921
Tumor
-0.2
383
Tumor
-0.2
421
Tumor
-0.2
192
Normal
-0.2
617
Tumor
-0.2
354
Normal
-0.2
881
Tumor
-0.2
342
Normal
-0.2
492
Normal
-0.3
447
Tumor
-0.3
925
Tumor
-0.3
297
Tumor
-0.3
352
Normal
-0.3
185
Tumor
-0.3
724
Normal
-0.3
536
Normal
-0.3
1014
Normal
-0.3
391
Tumor
-0.4
573
Tumor
-0.4
743
Tumor
-0.4
497
Tumor
-0.4
1021
Tumor
-0.4
685
Tumor
-0.5
923
Tumor
-0.5
814
Normal
-0.5
943
Tumor
-0.5
983
Tumor
-0.5
737
Tumor
-0.5
951
Tumor
-0.5
533
Tumor
-0.6
341
Tumor
-0.6
975
Tumor
-0.6
331
Tumor
-0.6
427
Tumor
-0.6
527
Tumor
-0.6
443
Tumor
-0.6
311
Tumor
-0.7
213
Tumor
-0.7
413
Tumor
-0.7
965
Tumor
-0.7
535
Tumor
-0.7
865
Tumor
-0.7
545
Tumor
-0.7
131
Tumor
-0.7
493
Tumor
-0.8
917
Tumor
-0.8
425
Tumor
-0.8
813
Tumor
-0.9
343
Tumor
-1.0
283
Tumor
-1.0
817
Tumor
-1.0
211
Tumor
-1.0
385
Tumor
-1.2
661
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
