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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARFRP1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
58.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
57.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
57.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
57.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
56.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
55.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
54.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
54.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
52.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
51.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
50.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
48.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
47.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
46.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
46.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
45.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
43.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
41.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
41.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
41.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
40.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
40.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
40.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
39.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
39.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
39.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
38.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
37.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
37.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
37.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
35.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
35.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
35.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
34.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
33.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
32.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
32.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
32.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
32.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
32.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
32.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
32.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
32.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
32.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
32.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
31.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
31.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
31.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
31.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
31.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
31.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
29.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
28.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
28.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
28.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
28.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
27.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
27.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
27.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
27.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
27.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
26.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
26.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
26.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
26.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
26.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
26.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
25.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
25.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
24.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
23.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
23.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
22.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
22.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
22.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
21.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
21.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
17.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
16.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
15.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARFRP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.2
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
45.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
37.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
37.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
31.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
30.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
27.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
24.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.5
1027
Tumor
1.4
471
Tumor
1.2
1015
Tumor
1.1
745
Tumor
0.9
865
Tumor
0.8
981
Tumor
0.8
257
Tumor
0.8
727
Tumor
0.8
477
Tumor
0.8
147
Tumor
0.8
911
Tumor
0.8
271
Tumor
0.7
171
Tumor
0.7
925
Tumor
0.7
545
Tumor
0.7
395
Tumor
0.7
313
Tumor
0.7
967
Tumor
0.7
1013
Tumor
0.6
473
Tumor
0.6
921
Tumor
0.6
953
Tumor
0.6
411
Tumor
0.6
277
Tumor
0.6
937
Tumor
0.6
285
Tumor
0.6
1041
Tumor
0.5
913
Tumor
0.5
523
Tumor
0.5
525
Tumor
0.5
743
Tumor
0.5
145
Tumor
0.5
741
Tumor
0.5
553
Tumor
0.5
567
Tumor
0.5
351
Tumor
0.5
635
Tumor
0.5
341
Tumor
0.4
851
Tumor
0.4
571
Tumor
0.4
695
Tumor
0.4
617
Tumor
0.4
515
Tumor
0.4
221
Tumor
0.3
427
Tumor
0.3
641
Tumor
0.3
873
Tumor
0.3
187
Tumor
0.3
361
Tumor
0.3
755
Tumor
0.3
817
Tumor
0.3
267
Tumor
0.3
451
Tumor
0.3
627
Tumor
0.3
527
Tumor
0.3
141
Tumor
0.3
535
Tumor
0.3
463
Tumor
0.3
1025
Tumor
0.3
327
Tumor
0.3
443
Tumor
0.2
213
Tumor
0.2
663
Tumor
0.2
618
Normal
0.2
537
Tumor
0.2
161
Tumor
0.2
385
Tumor
0.2
227
Tumor
0.2
223
Tumor
0.2
1043
Tumor
0.2
557
Tumor
0.2
943
Tumor
0.2
331
Tumor
0.2
261
Tumor
0.2
445
Tumor
0.2
357
Tumor
0.2
355
Tumor
0.2
923
Tumor
0.2
283
Tumor
0.2
815
Tumor
0.2
1021
Tumor
0.2
685
Tumor
0.2
483
Tumor
0.1
465
Tumor
0.1
636
Normal
0.1
951
Tumor
0.1
211
Tumor
0.1
737
Tumor
0.1
123
Tumor
0.1
368
Normal
0.1
388
Normal
0.1
983
Tumor
0.1
491
Tumor
0.1
497
Tumor
0.1
861
Tumor
0.1
125
Tumor
0.1
487
Tumor
0.1
396
Normal
0.1
394
Normal
0.1
185
Tumor
0.1
813
Tumor
0.1
217
Tumor
0.1
365
Tumor
0.1
573
Tumor
0.1
172
Normal
0.1
393
Tumor
0.1
363
Tumor
0.1
823
Tumor
0.1
387
Tumor
0.1
162
Normal
0.0
713
Tumor
0.0
392
Normal
0.0
647
Tumor
0.0
461
Tumor
0.0
423
Tumor
0.0
877
Tumor
0.0
231
Tumor
0.0
386
Normal
0.0
881
Tumor
0.0
148
Normal
0.0
433
Tumor
0.0
563
Tumor
0.0
1045
Tumor
0.0
564
Normal
0.0
375
Tumor
0.0
615
Tumor
0.0
975
Tumor
0.0
195
Tumor
0.0
366
Normal
0.0
1031
Tumor
0.0
493
Tumor
0.0
568
Normal
0.0
574
Normal
0.0
955
Tumor
0.0
362
Normal
0.0
135
Tumor
0.0
186
Normal
0.0
867
Tumor
0.0
963
Tumor
-0.1
262
Normal
-0.1
124
Normal
-0.1
188
Normal
-0.1
232
Normal
-0.1
297
Tumor
-0.1
376
Normal
-0.1
413
Tumor
-0.1
724
Normal
-0.1
272
Normal
-0.1
391
Tumor
-0.1
258
Normal
-0.1
642
Normal
-0.1
112
Tumor
-0.1
353
Tumor
-0.1
616
Normal
-0.1
474
Normal
-0.1
421
Tumor
-0.1
518
Normal
-0.1
558
Normal
-0.1
384
Normal
-0.1
628
Normal
-0.1
367
Tumor
-0.2
883
Tumor
-0.2
777
Tumor
-0.2
952
Normal
-0.2
132
Normal
-0.2
137
Tumor
-0.2
957
Tumor
-0.2
977
Tumor
-0.2
136
Normal
-0.2
435
Tumor
-0.2
127
Tumor
-0.2
484
Normal
-0.2
572
Normal
-0.2
452
Normal
-0.2
467
Tumor
-0.2
113
Tumor
-0.2
196
Normal
-0.2
191
Tumor
-0.2
111
Normal
-0.2
915
Tumor
-0.2
128
Normal
-0.2
268
Normal
-0.2
114
Normal
-0.2
492
Normal
-0.2
218
Normal
-0.2
914
Normal
-0.2
785
Tumor
-0.2
383
Tumor
-0.2
513
Tumor
-0.2
464
Normal
-0.2
671
Tumor
-0.3
455
Tumor
-0.3
138
Normal
-0.3
526
Normal
-0.3
956
Normal
-0.3
648
Normal
-0.3
1016
Normal
-0.3
517
Tumor
-0.3
415
Tumor
-0.3
278
Normal
-0.3
536
Normal
-0.3
342
Normal
-0.3
422
Normal
-0.3
298
Normal
-0.3
868
Normal
-0.3
696
Normal
-0.3
494
Normal
-0.3
742
Normal
-0.3
863
Tumor
-0.3
965
Tumor
-0.3
142
Normal
-0.3
722
Normal
-0.3
328
Normal
-0.3
426
Normal
-0.3
665
Tumor
-0.3
662
Normal
-0.3
664
Normal
-0.3
468
Normal
-0.3
344
Normal
-0.3
982
Normal
-0.4
311
Tumor
-0.4
314
Normal
-0.4
456
Normal
-0.4
857
Tumor
-0.4
466
Normal
-0.4
1014
Normal
-0.4
481
Tumor
-0.4
814
Normal
-0.4
431
Tumor
-0.4
214
Normal
-0.4
126
Normal
-0.4
462
Normal
-0.4
1028
Normal
-0.4
917
Tumor
-0.4
212
Normal
-0.4
554
Normal
-0.4
882
Normal
-0.4
436
Normal
-0.4
222
Normal
-0.4
434
Normal
-0.4
918
Normal
-0.4
358
Normal
-0.4
866
Normal
-0.4
721
Tumor
-0.4
864
Normal
-0.4
286
Normal
-0.4
424
Normal
-0.4
416
Normal
-0.4
516
Normal
-0.4
966
Normal
-0.4
878
Normal
-0.4
131
Tumor
-0.4
524
Normal
-0.4
728
Normal
-0.4
482
Normal
-0.5
874
Normal
-0.5
862
Normal
-0.5
414
Normal
-0.5
284
Normal
-0.5
538
Normal
-0.5
488
Normal
-0.5
715
Tumor
-0.5
412
Normal
-0.5
448
Normal
-0.5
666
Normal
-0.5
352
Normal
-0.5
968
Normal
-0.5
744
Normal
-0.5
938
Normal
-0.5
356
Normal
-0.5
472
Normal
-0.5
738
Normal
-0.5
672
Normal
-0.5
816
Normal
-0.5
924
Normal
-0.5
354
Normal
-0.5
698
Normal
-0.5
984
Normal
-0.5
498
Normal
-0.5
858
Normal
-0.5
312
Normal
-0.5
228
Normal
-0.6
922
Normal
-0.6
447
Tumor
-0.6
343
Tumor
-0.6
778
Normal
-0.6
916
Normal
-0.6
912
Normal
-0.6
746
Normal
-0.6
546
Normal
-0.6
332
Normal
-0.6
686
Normal
-0.6
926
Normal
-0.6
1026
Normal
-0.6
1046
Normal
-0.6
978
Normal
-0.6
714
Normal
-0.6
661
Tumor
-0.6
146
Normal
-0.6
514
Normal
-0.6
884
Normal
-0.7
697
Tumor
-0.7
425
Tumor
-0.7
1044
Normal
-0.7
446
Normal
-0.7
224
Normal
-0.7
428
Normal
-0.7
944
Normal
-0.7
976
Normal
-0.7
824
Normal
-0.7
534
Normal
-0.7
528
Normal
-0.8
364
Normal
-0.8
716
Normal
-0.8
852
Normal
-0.8
786
Normal
-0.8
964
Normal
-0.8
723
Tumor
-0.8
444
Normal
-0.8
478
Normal
-0.8
1042
Normal
-0.9
192
Normal
-0.9
756
Normal
-0.9
1032
Normal
-0.9
958
Normal
-0.9
954
Normal
-1.0
1022
Normal
-1.1
432
Normal
-1.1
818
Normal
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
