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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
56.7
nTPM
HPA Brain:
318.7
nTPM
GTEx:
56.7
nTPM
FANTOM5:
30.7
Scaled Tags Per Million
Pig:
722.3
nTPM
Mouse:
512.3
nTPM
Allen mouse:
22.6
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
318.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 206.7
2666
Male, age 74, left hemisphere
305.6
2219
Male, age 76, both hemispheres
301.5
2019
Male, age 18, unknown
220.9
1827
Male, age 72, unknown
218.8
2411
Female, age 72, unknown
212.5
2828
Female, age 72, unknown
207.1
1870
Female, age 42, unknown
158.5
1833
Male, age 53, unknown
154.8
2586
Male, age 75, left hemisphere
147.9
1830
Male, age 51, unknown
139.6
Dorsal raphe nucleus nTPM: 231.9
2298
Female, age 72, unknown
302.0
2047
Male, age 72, unknown
259.2
2750
Male, age 76, both hemispheres
241.9
1828
Male, age 53, unknown
231.4
2016
Female, age 72, unknown
125.0
Inferior colliculus nTPM: 207.6
2097
Female, age 72, unknown
267.1
1848
Female, age 42, unknown
209.2
1890
Male, age 53, unknown
185.7
2849
Male, age 72, unknown
168.2
Median raphe nucleus nTPM: 318.7
2220
Male, age 76, midline
318.7
Periaquaductal grey, anterior nTPM: 229.4
1795
Male, age 51, unknown
250.4
2502
Female, age 75, unknown
228.6
1947
Male, age 18, unknown
209.3
Periaquaductal grey, dorsal nTPM: 153.5
1831
Male, age 72, unknown
166.6
1840
Male, age 53, unknown
160.3
2850
Male, age 76, both hemispheres
146.3
2464
Female, age 72, unknown
140.8
Periaquaductal grey, lateral nTPM: 127.7
2053
Male, age 18, unknown
131.8
2272
Male, age 74, both hemispheres
125.6
2140
Male, age 76, both hemispheres
125.5
Pretectal area nTPM: 245.6
2667
Female, age 75, unknown
439.1
2007
Male, age 72, unknown
347.1
1944
Female, age 72, unknown
345.6
1817
Female, age 42, unknown
328.1
1816
Male, age 51, unknown
320.1
1815
Male, age 53, unknown
236.1
2224
Female, age 72, unknown
223.8
2825
Male, age 18, unknown
147.8
2316
Male, age 76, right hemisphere
127.3
2273
Male, age 74, both hemispheres
96.0
2407
Male, age 75, both hemispheres
90.7
Red nucleus nTPM: 156.8
2785
Male, age 18, unknown
218.3
1821
Female, age 72, unknown
192.0
2584
Male, age 75, left hemisphere
180.5
1954
Female, age 42, unknown
175.8
2769
Male, age 72, unknown
166.5
2227
Male, age 72, unknown
163.6
2823
Male, age 76, right hemisphere
161.6
2503
Female, age 72, unknown
148.5
1904
Male, age 53, unknown
138.8
1865
Male, age 51, unknown
137.6
2588
Male, age 74, left hemisphere
130.8
2725
Female, age 75, unknown
67.4
Substantia nigra nTPM: 241.3
1916
Female, age 42, unknown
426.2
1941
Male, age 53, unknown
338.8
2665
Male, age 74, both hemispheres
302.7
1889
Female, age 72, unknown
297.7
1851
Male, age 51, unknown
269.0
2409
Female, age 72, unknown
208.8
2699
Male, age 18, unknown
181.2
2241
Male, age 72, unknown
155.1
2583
Male, age 75, right hemisphere
130.6
2590
Female, age 75, unknown
102.6
Superior colliculus nTPM: 198.2
2668
Female, age 75, unknown
423.6
2087
Female, age 72, unknown
275.1
1796
Male, age 53, unknown
228.8
1895
Male, age 76, right hemisphere
215.5
2261
Male, age 18, unknown
211.5
1839
Male, age 51, unknown
164.5
1913
Female, age 42, unknown
147.1
1995
Male, age 72, unknown
116.8
2587
Male, age 74, left hemisphere
112.5
2664
Male, age 75, both hemispheres
86.1
Ventral tegmental area nTPM: 252.9
2218
Male, age 76, both hemispheres
373.1
2410
Female, age 72, unknown
304.7
1915
Female, age 42, unknown
292.6
1942
Male, age 51, unknown
209.2
2223
Female, age 72, unknown
177.6
2021
Male, age 53, unknown
160.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
56.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 56.7
Samples: 139
Max nTPM: 602.0
Min nTPM: 1.8
Std nTPM: 75.3
Median nTPM: 28.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
602.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
439.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
203.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
190.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
176.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
174.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
171.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
169.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
159.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
158.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
157.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
154.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
149.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
148.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
144.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
136.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
129.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
129.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
127.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
115.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
114.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
111.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
107.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
106.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
102.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
100.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
93.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
92.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
85.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
85.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
84.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
81.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
81.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
78.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
76.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
71.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
70.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
68.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
65.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
64.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
63.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
63.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
62.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
58.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
58.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
58.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
57.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
56.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
52.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
50.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
47.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
47.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
47.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
46.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
46.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
44.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
44.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
44.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
42.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
41.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
41.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
40.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
40.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
39.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
34.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
33.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
32.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
30.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
29.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
28.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
26.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
26.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
24.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
22.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
22.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
22.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
22.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
22.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
21.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
21.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
21.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
21.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
20.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
20.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
20.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
20.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
19.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
18.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
17.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
17.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
17.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
17.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
16.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
16.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
16.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
15.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
15.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
15.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
14.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
14.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
13.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
13.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
11.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
11.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
11.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
11.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
11.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
11.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
11.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
10.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
10.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
10.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
10.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
9.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
9.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
9.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
9.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
9.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
8.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
8.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
8.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
8.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
8.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
8.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
8.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
8.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
7.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
7.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
7.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
6.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
6.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
5.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
5.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
5.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
4.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
4.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
3.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
3.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
512.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 512.3
Samples: 4
Max nTPM: 532.5
Min nTPM: 490.1
Sample A
Male
532.5
Sample B
Male
490.1
Sample C
Female
505.2
Sample D
Female
521.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.