We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PFDN4 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
5.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
4.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PFDN4 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.8
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
46.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
41.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
35.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
2.0
1021
Tumor
1.0
483
Tumor
1.0
473
Tumor
1.0
411
Tumor
0.9
951
Tumor
0.9
545
Tumor
0.9
283
Tumor
0.8
923
Tumor
0.8
724
Normal
0.8
351
Tumor
0.8
1025
Tumor
0.7
983
Tumor
0.7
1031
Tumor
0.7
737
Tumor
0.7
497
Tumor
0.7
745
Tumor
0.7
537
Tumor
0.7
525
Tumor
0.6
147
Tumor
0.6
567
Tumor
0.6
425
Tumor
0.6
957
Tumor
0.6
943
Tumor
0.6
647
Tumor
0.6
967
Tumor
0.5
327
Tumor
0.5
1027
Tumor
0.5
921
Tumor
0.5
487
Tumor
0.5
965
Tumor
0.5
953
Tumor
0.5
131
Tumor
0.5
285
Tumor
0.5
925
Tumor
0.5
435
Tumor
0.5
211
Tumor
0.5
355
Tumor
0.5
865
Tumor
0.5
535
Tumor
0.5
663
Tumor
0.5
777
Tumor
0.5
367
Tumor
0.5
517
Tumor
0.5
471
Tumor
0.4
431
Tumor
0.4
387
Tumor
0.4
685
Tumor
0.4
493
Tumor
0.4
1015
Tumor
0.4
513
Tumor
0.4
477
Tumor
0.4
661
Tumor
0.4
963
Tumor
0.4
527
Tumor
0.4
785
Tumor
0.3
695
Tumor
0.3
1043
Tumor
0.3
523
Tumor
0.3
415
Tumor
0.3
217
Tumor
0.3
227
Tumor
0.3
697
Tumor
0.3
981
Tumor
0.3
977
Tumor
0.3
553
Tumor
0.3
727
Tumor
0.3
956
Normal
0.3
171
Tumor
0.3
313
Tumor
0.3
515
Tumor
0.3
533
Tumor
0.3
331
Tumor
0.3
478
Normal
0.3
363
Tumor
0.3
536
Normal
0.3
385
Tumor
0.2
357
Tumor
0.2
447
Tumor
0.2
817
Tumor
0.2
917
Tumor
0.2
257
Tumor
0.2
915
Tumor
0.2
492
Normal
0.2
952
Normal
0.2
573
Tumor
0.2
823
Tumor
0.2
975
Tumor
0.2
881
Tumor
0.2
743
Tumor
0.2
125
Tumor
0.2
937
Tumor
0.2
221
Tumor
0.2
851
Tumor
0.2
311
Tumor
0.2
938
Normal
0.2
926
Normal
0.1
161
Tumor
0.1
463
Tumor
0.1
465
Tumor
0.1
883
Tumor
0.1
857
Tumor
0.1
873
Tumor
0.1
375
Tumor
0.1
916
Normal
0.1
978
Normal
0.1
443
Tumor
0.1
958
Normal
0.1
1045
Tumor
0.1
498
Normal
0.1
271
Tumor
0.1
698
Normal
0.1
491
Tumor
0.1
482
Normal
0.1
671
Tumor
0.1
635
Tumor
0.0
361
Tumor
0.0
1014
Normal
0.0
391
Tumor
0.0
1044
Normal
0.0
481
Tumor
0.0
524
Normal
0.0
445
Tumor
0.0
1046
Normal
0.0
516
Normal
0.0
858
Normal
0.0
461
Tumor
0.0
383
Tumor
0.0
343
Tumor
0.0
918
Normal
0.0
433
Tumor
0.0
112
Tumor
0.0
964
Normal
0.0
518
Normal
0.0
924
Normal
0.0
472
Normal
0.0
416
Normal
0.0
966
Normal
0.0
127
Tumor
0.0
861
Tumor
0.0
984
Normal
0.0
863
Tumor
0.0
944
Normal
0.0
538
Normal
0.0
815
Tumor
0.0
341
Tumor
0.0
455
Tumor
0.0
448
Normal
0.0
364
Normal
0.0
755
Tumor
-0.1
715
Tumor
-0.1
982
Normal
-0.1
1032
Normal
-0.1
665
Tumor
-0.1
528
Normal
-0.1
534
Normal
-0.1
955
Tumor
-0.1
976
Normal
-0.1
1026
Normal
-0.1
571
Tumor
-0.1
514
Normal
-0.1
223
Tumor
-0.1
427
Tumor
-0.1
228
Normal
-0.1
714
Normal
-0.1
563
Tumor
-0.1
696
Normal
-0.1
488
Normal
-0.1
231
Tumor
-0.1
852
Normal
-0.1
723
Tumor
-0.1
474
Normal
-0.1
716
Normal
-0.1
1042
Normal
-0.1
968
Normal
-0.1
212
Normal
-0.1
1016
Normal
-0.1
284
Normal
-0.1
814
Normal
-0.1
261
Tumor
-0.1
868
Normal
-0.1
922
Normal
-0.1
756
Normal
-0.1
728
Normal
-0.1
224
Normal
-0.1
191
Tumor
-0.1
713
Tumor
-0.1
328
Normal
-0.1
686
Normal
-0.1
413
Tumor
-0.1
954
Normal
-0.1
277
Tumor
-0.1
141
Tumor
-0.1
1041
Tumor
-0.2
546
Normal
-0.2
1022
Normal
-0.2
778
Normal
-0.2
466
Normal
-0.2
913
Tumor
-0.2
213
Tumor
-0.2
558
Normal
-0.2
135
Tumor
-0.2
356
Normal
-0.2
746
Normal
-0.2
484
Normal
-0.2
1028
Normal
-0.2
912
Normal
-0.2
786
Normal
-0.2
353
Tumor
-0.2
185
Tumor
-0.2
384
Normal
-0.2
867
Tumor
-0.2
376
Normal
-0.2
554
Normal
-0.2
874
Normal
-0.2
722
Normal
-0.2
286
Normal
-0.2
526
Normal
-0.2
738
Normal
-0.2
195
Tumor
-0.2
412
Normal
-0.2
467
Tumor
-0.2
721
Tumor
-0.2
494
Normal
-0.2
741
Tumor
-0.3
452
Normal
-0.3
142
Normal
-0.3
462
Normal
-0.3
126
Normal
-0.3
395
Tumor
-0.3
877
Tumor
-0.3
672
Normal
-0.3
617
Tumor
-0.3
911
Tumor
-0.3
137
Tumor
-0.3
813
Tumor
-0.3
864
Normal
-0.3
145
Tumor
-0.3
742
Normal
-0.3
268
Normal
-0.3
162
Normal
-0.3
365
Tumor
-0.3
297
Tumor
-0.3
882
Normal
-0.3
358
Normal
-0.3
862
Normal
-0.3
824
Normal
-0.3
354
Normal
-0.3
342
Normal
-0.4
456
Normal
-0.4
444
Normal
-0.4
123
Tumor
-0.4
136
Normal
-0.4
816
Normal
-0.4
557
Tumor
-0.4
262
Normal
-0.4
298
Normal
-0.4
362
Normal
-0.4
468
Normal
-0.4
272
Normal
-0.4
258
Normal
-0.4
138
Normal
-0.4
878
Normal
-0.4
366
Normal
-0.4
426
Normal
-0.4
818
Normal
-0.4
187
Tumor
-0.4
232
Normal
-0.4
866
Normal
-0.4
314
Normal
-0.4
664
Normal
-0.4
214
Normal
-0.4
423
Tumor
-0.4
368
Normal
-0.4
421
Tumor
-0.4
662
Normal
-0.4
352
Normal
-0.4
344
Normal
-0.4
615
Tumor
-0.4
172
Normal
-0.4
464
Normal
-0.4
267
Tumor
-0.4
666
Normal
-0.4
424
Normal
-0.4
451
Tumor
-0.4
146
Normal
-0.4
148
Normal
-0.4
434
Normal
-0.5
114
Normal
-0.5
648
Normal
-0.5
618
Normal
-0.5
278
Normal
-0.5
132
Normal
-0.5
641
Tumor
-0.5
312
Normal
-0.5
414
Normal
-0.5
386
Normal
-0.5
914
Normal
-0.5
436
Normal
-0.5
218
Normal
-0.5
188
Normal
-0.5
332
Normal
-0.5
113
Tumor
-0.5
744
Normal
-0.5
192
Normal
-0.5
196
Normal
-0.5
428
Normal
-0.5
128
Normal
-0.5
222
Normal
-0.5
394
Normal
-0.5
884
Normal
-0.5
124
Normal
-0.5
568
Normal
-0.5
564
Normal
-0.6
432
Normal
-0.6
446
Normal
-0.6
111
Normal
-0.6
572
Normal
-0.6
396
Normal
-0.6
642
Normal
-0.6
388
Normal
-0.6
616
Normal
-0.6
392
Normal
-0.6
628
Normal
-0.6
636
Normal
-0.7
393
Tumor
-0.7
422
Normal
-0.7
574
Normal
-0.7
186
Normal
-0.7
627
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
