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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SGK2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
82.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
82.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
65.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
58.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
57.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
50.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
47.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
46.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
46.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
44.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
44.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
42.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
40.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
39.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
38.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
38.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
38.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
38.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
38.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
37.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
37.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
37.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
36.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
35.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
35.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
34.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
34.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
33.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
33.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
32.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
32.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
32.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
32.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
31.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
31.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
31.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
30.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
29.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
29.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
27.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
27.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
24.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SGK2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.0
Number of samples
231
Samples
Sample
Description
TPM
DO23534
0 years, male, NA, stage:2, alive, 840 days
167.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
134.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
110.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
89.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
86.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
72.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
66.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
64.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
64.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
59.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
59.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
59.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
58.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
57.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
55.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
54.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
54.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
52.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
51.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
46.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
45.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
44.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
44.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
44.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
39.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
37.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
37.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
36.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
36.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
36.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
36.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
36.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
35.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
35.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
35.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
35.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
34.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
34.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
33.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
32.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
32.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
32.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
32.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
32.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
31.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
31.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
29.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
29.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
29.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
28.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
27.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
27.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
27.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
26.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
26.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
26.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
25.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
24.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
22.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
22.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
21.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
487
Tumor
1.0
465
Tumor
0.9
1013
Tumor
0.7
571
Tumor
0.7
171
Tumor
0.7
1031
Tumor
0.7
816
Normal
0.7
1015
Tumor
0.7
221
Tumor
0.6
695
Tumor
0.6
515
Tumor
0.6
411
Tumor
0.6
955
Tumor
0.6
743
Tumor
0.6
938
Normal
0.6
527
Tumor
0.6
285
Tumor
0.5
523
Tumor
0.5
956
Normal
0.5
952
Normal
0.5
435
Tumor
0.5
451
Tumor
0.5
1043
Tumor
0.5
873
Tumor
0.5
518
Normal
0.5
824
Normal
0.5
212
Normal
0.4
484
Normal
0.4
813
Tumor
0.4
461
Tumor
0.4
564
Normal
0.4
943
Tumor
0.4
135
Tumor
0.4
481
Tumor
0.4
728
Normal
0.4
647
Tumor
0.4
554
Normal
0.4
327
Tumor
0.4
713
Tumor
0.4
494
Normal
0.4
415
Tumor
0.4
356
Normal
0.3
558
Normal
0.3
114
Normal
0.3
462
Normal
0.3
145
Tumor
0.3
663
Tumor
0.3
568
Normal
0.3
727
Tumor
0.3
357
Tumor
0.3
755
Tumor
0.3
1026
Normal
0.3
863
Tumor
0.3
228
Normal
0.3
286
Normal
0.3
342
Normal
0.3
944
Normal
0.3
738
Normal
0.3
737
Tumor
0.3
355
Tumor
0.3
723
Tumor
0.3
563
Tumor
0.3
981
Tumor
0.3
277
Tumor
0.3
978
Normal
0.2
1016
Normal
0.2
341
Tumor
0.2
132
Normal
0.2
463
Tumor
0.2
975
Tumor
0.2
267
Tumor
0.2
412
Normal
0.2
742
Normal
0.2
123
Tumor
0.2
553
Tumor
0.2
161
Tumor
0.2
452
Normal
0.2
466
Normal
0.2
223
Tumor
0.2
858
Normal
0.2
572
Normal
0.2
431
Tumor
0.2
671
Tumor
0.2
474
Normal
0.2
138
Normal
0.2
364
Normal
0.2
141
Tumor
0.2
741
Tumor
0.2
111
Normal
0.2
172
Normal
0.2
546
Normal
0.2
1042
Normal
0.2
278
Normal
0.2
433
Tumor
0.2
696
Normal
0.2
648
Normal
0.2
488
Normal
0.2
533
Tumor
0.2
785
Tumor
0.2
222
Normal
0.2
573
Tumor
0.2
218
Normal
0.2
464
Normal
0.2
966
Normal
0.2
911
Tumor
0.2
492
Normal
0.2
328
Normal
0.2
136
Normal
0.1
188
Normal
0.1
112
Tumor
0.1
358
Normal
0.1
1032
Normal
0.1
344
Normal
0.1
968
Normal
0.1
422
Normal
0.1
517
Tumor
0.1
635
Tumor
0.1
482
Normal
0.1
128
Normal
0.1
217
Tumor
0.1
361
Tumor
0.1
284
Normal
0.1
187
Tumor
0.1
331
Tumor
0.1
777
Tumor
0.1
912
Normal
0.1
698
Normal
0.1
456
Normal
0.1
258
Normal
0.1
982
Normal
0.1
113
Tumor
0.1
954
Normal
0.1
436
Normal
0.1
664
Normal
0.1
937
Tumor
0.1
162
Normal
0.1
455
Tumor
0.1
866
Normal
0.1
445
Tumor
0.1
195
Tumor
0.1
951
Tumor
0.1
1045
Tumor
0.1
534
Normal
0.1
186
Normal
0.1
137
Tumor
0.0
953
Tumor
0.0
483
Tumor
0.0
127
Tumor
0.0
385
Tumor
0.0
862
Normal
0.0
574
Normal
0.0
528
Normal
0.0
477
Tumor
0.0
272
Normal
0.0
498
Normal
0.0
393
Tumor
0.0
416
Normal
0.0
964
Normal
0.0
448
Normal
0.0
914
Normal
0.0
913
Tumor
0.0
672
Normal
0.0
852
Normal
0.0
196
Normal
0.0
434
Normal
0.0
818
Normal
0.0
662
Normal
0.0
214
Normal
0.0
526
Normal
0.0
1028
Normal
0.0
868
Normal
0.0
148
Normal
0.0
666
Normal
0.0
882
Normal
0.0
714
Normal
0.0
443
Tumor
0.0
722
Normal
0.0
425
Tumor
0.0
362
Normal
0.0
232
Normal
0.0
497
Tumor
0.0
472
Normal
0.0
1044
Normal
0.0
124
Normal
0.0
426
Normal
0.0
665
Tumor
0.0
312
Normal
0.0
1027
Tumor
0.0
864
Normal
0.0
642
Normal
0.0
924
Normal
-0.1
1022
Normal
-0.1
716
Normal
-0.1
366
Normal
-0.1
353
Tumor
-0.1
516
Normal
-0.1
365
Tumor
-0.1
976
Normal
-0.1
746
Normal
-0.1
1025
Tumor
-0.1
557
Tumor
-0.1
446
Normal
-0.1
262
Normal
-0.1
686
Normal
-0.1
126
Normal
-0.1
925
Tumor
-0.1
428
Normal
-0.1
545
Tumor
-0.1
261
Tumor
-0.1
1046
Normal
-0.1
878
Normal
-0.1
142
Normal
-0.1
191
Tumor
-0.1
396
Normal
-0.1
1014
Normal
-0.1
386
Normal
-0.1
343
Tumor
-0.1
923
Tumor
-0.1
493
Tumor
-0.1
468
Normal
-0.1
918
Normal
-0.1
421
Tumor
-0.1
967
Tumor
-0.2
984
Normal
-0.2
618
Normal
-0.2
376
Normal
-0.2
513
Tumor
-0.2
721
Tumor
-0.2
874
Normal
-0.2
685
Tumor
-0.2
192
Normal
-0.2
125
Tumor
-0.2
298
Normal
-0.2
491
Tumor
-0.2
1021
Tumor
-0.2
524
Normal
-0.2
185
Tumor
-0.2
922
Normal
-0.2
432
Normal
-0.2
314
Normal
-0.2
363
Tumor
-0.2
224
Normal
-0.2
447
Tumor
-0.2
915
Tumor
-0.2
146
Normal
-0.2
332
Normal
-0.2
958
Normal
-0.2
877
Tumor
-0.2
567
Tumor
-0.3
423
Tumor
-0.3
926
Normal
-0.3
392
Normal
-0.3
368
Normal
-0.3
744
Normal
-0.3
395
Tumor
-0.3
414
Normal
-0.3
213
Tumor
-0.3
921
Tumor
-0.3
884
Normal
-0.3
745
Tumor
-0.3
297
Tumor
-0.3
387
Tumor
-0.3
383
Tumor
-0.3
536
Normal
-0.3
916
Normal
-0.3
467
Tumor
-0.3
857
Tumor
-0.3
636
Normal
-0.3
715
Tumor
-0.3
535
Tumor
-0.3
424
Normal
-0.3
537
Tumor
-0.4
268
Normal
-0.4
786
Normal
-0.4
131
Tumor
-0.4
514
Normal
-0.4
352
Normal
-0.4
778
Normal
-0.4
394
Normal
-0.4
881
Tumor
-0.4
963
Tumor
-0.4
957
Tumor
-0.4
851
Tumor
-0.4
525
Tumor
-0.4
257
Tumor
-0.4
354
Normal
-0.4
538
Normal
-0.4
473
Tumor
-0.4
627
Tumor
-0.4
388
Normal
-0.4
861
Tumor
-0.4
147
Tumor
-0.5
478
Normal
-0.5
865
Tumor
-0.5
444
Normal
-0.5
231
Tumor
-0.5
977
Tumor
-0.5
867
Tumor
-0.5
814
Normal
-0.5
471
Tumor
-0.5
756
Normal
-0.5
823
Tumor
-0.5
617
Tumor
-0.5
965
Tumor
-0.5
271
Tumor
-0.5
917
Tumor
-0.5
427
Tumor
-0.6
983
Tumor
-0.6
697
Tumor
-0.6
883
Tumor
-0.6
375
Tumor
-0.6
311
Tumor
-0.6
628
Normal
-0.7
313
Tumor
-0.7
367
Tumor
-0.8
384
Normal
-0.8
641
Tumor
-0.8
817
Tumor
-0.8
724
Normal
-0.8
391
Tumor
-0.8
283
Tumor
-0.8
815
Tumor
-0.8
227
Tumor
-0.8
615
Tumor
-0.9
413
Tumor
-0.9
1041
Tumor
-0.9
351
Tumor
-1.0
616
Normal
-1.1
661
Tumor
-1.2
211
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
