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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PROCR is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
95.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
64.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
37.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
35.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
27.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PROCR is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.0
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
65.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
48.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
44.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
41.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
37.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
36.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
32.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
30.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
696
Normal
3.0
716
Normal
2.7
715
Tumor
2.6
714
Normal
2.6
536
Normal
2.0
917
Tumor
1.5
311
Tumor
1.4
492
Normal
1.4
916
Normal
1.3
444
Normal
1.1
535
Tumor
1.1
478
Normal
1.1
384
Normal
1.0
268
Normal
1.0
421
Tumor
0.9
383
Tumor
0.9
312
Normal
0.9
188
Normal
0.9
192
Normal
0.9
918
Normal
0.9
1044
Normal
0.8
1028
Normal
0.8
852
Normal
0.8
447
Tumor
0.8
881
Tumor
0.8
874
Normal
0.8
538
Normal
0.7
516
Normal
0.7
146
Normal
0.7
574
Normal
0.7
262
Normal
0.7
672
Normal
0.7
212
Normal
0.7
524
Normal
0.7
498
Normal
0.7
224
Normal
0.7
814
Normal
0.6
455
Tumor
0.6
185
Tumor
0.6
297
Tumor
0.6
284
Normal
0.6
272
Normal
0.6
386
Normal
0.6
984
Normal
0.6
138
Normal
0.6
563
Tumor
0.6
393
Tumor
0.5
223
Tumor
0.5
434
Normal
0.5
362
Normal
0.5
258
Normal
0.5
558
Normal
0.5
958
Normal
0.5
686
Normal
0.5
232
Normal
0.5
713
Tumor
0.5
367
Tumor
0.4
976
Normal
0.4
778
Normal
0.4
943
Tumor
0.4
816
Normal
0.4
952
Normal
0.4
954
Normal
0.4
228
Normal
0.4
392
Normal
0.4
878
Normal
0.4
385
Tumor
0.4
211
Tumor
0.4
641
Tumor
0.4
924
Normal
0.4
468
Normal
0.4
823
Tumor
0.4
662
Normal
0.4
376
Normal
0.4
1032
Normal
0.4
1014
Normal
0.3
744
Normal
0.3
914
Normal
0.3
883
Tumor
0.3
857
Tumor
0.3
356
Normal
0.3
286
Normal
0.3
416
Normal
0.3
884
Normal
0.3
461
Tumor
0.3
396
Normal
0.3
913
Tumor
0.3
366
Normal
0.3
214
Normal
0.3
944
Normal
0.3
412
Normal
0.3
882
Normal
0.3
926
Normal
0.3
213
Tumor
0.3
218
Normal
0.3
491
Tumor
0.3
483
Tumor
0.3
124
Normal
0.3
921
Tumor
0.3
344
Normal
0.3
332
Normal
0.3
956
Normal
0.3
785
Tumor
0.3
525
Tumor
0.3
978
Normal
0.3
494
Normal
0.2
368
Normal
0.2
126
Normal
0.2
738
Normal
0.2
415
Tumor
0.2
395
Tumor
0.2
545
Tumor
0.2
352
Normal
0.2
448
Normal
0.2
187
Tumor
0.2
1022
Normal
0.2
314
Normal
0.2
922
Normal
0.2
636
Normal
0.2
432
Normal
0.2
298
Normal
0.2
474
Normal
0.2
354
Normal
0.2
864
Normal
0.2
172
Normal
0.2
364
Normal
0.2
467
Tumor
0.2
261
Tumor
0.2
452
Normal
0.2
975
Tumor
0.2
756
Normal
0.2
1042
Normal
0.2
923
Tumor
0.2
966
Normal
0.1
456
Normal
0.1
642
Normal
0.1
526
Normal
0.1
1045
Tumor
0.1
728
Normal
0.1
278
Normal
0.1
721
Tumor
0.1
671
Tumor
0.1
697
Tumor
0.1
982
Normal
0.1
145
Tumor
0.1
817
Tumor
0.1
487
Tumor
0.1
137
Tumor
0.1
186
Normal
0.1
433
Tumor
0.1
422
Normal
0.1
968
Normal
0.1
136
Normal
0.1
388
Normal
0.1
394
Normal
0.1
148
Normal
0.1
466
Normal
0.1
365
Tumor
0.1
355
Tumor
0.1
723
Tumor
0.0
818
Normal
0.0
436
Normal
0.0
877
Tumor
0.0
472
Normal
0.0
514
Normal
0.0
938
Normal
0.0
191
Tumor
0.0
564
Normal
0.0
328
Normal
0.0
196
Normal
0.0
283
Tumor
0.0
528
Normal
0.0
1016
Normal
0.0
568
Normal
0.0
866
Normal
0.0
925
Tumor
0.0
363
Tumor
0.0
813
Tumor
0.0
963
Tumor
-0.1
132
Normal
-0.1
277
Tumor
-0.1
464
Normal
-0.1
114
Normal
-0.1
446
Normal
-0.1
572
Normal
-0.1
695
Tumor
-0.1
546
Normal
-0.1
666
Normal
-0.1
162
Normal
-0.1
862
Normal
-0.1
493
Tumor
-0.1
142
Normal
-0.1
664
Normal
-0.1
742
Normal
-0.1
824
Normal
-0.1
617
Tumor
-0.1
424
Normal
-0.1
627
Tumor
-0.1
858
Normal
-0.1
471
Tumor
-0.1
964
Normal
-0.1
554
Normal
-0.1
786
Normal
-0.1
648
Normal
-0.2
327
Tumor
-0.2
111
Normal
-0.2
488
Normal
-0.2
868
Normal
-0.2
313
Tumor
-0.2
912
Normal
-0.2
141
Tumor
-0.2
462
Normal
-0.2
375
Tumor
-0.2
628
Normal
-0.2
1046
Normal
-0.2
161
Tumor
-0.2
128
Normal
-0.2
414
Normal
-0.2
195
Tumor
-0.2
426
Normal
-0.2
1031
Tumor
-0.2
331
Tumor
-0.2
618
Normal
-0.3
698
Normal
-0.3
222
Normal
-0.3
553
Tumor
-0.3
1015
Tumor
-0.3
537
Tumor
-0.3
217
Tumor
-0.3
722
Normal
-0.3
387
Tumor
-0.4
423
Tumor
-0.4
171
Tumor
-0.4
435
Tumor
-0.4
113
Tumor
-0.4
231
Tumor
-0.4
271
Tumor
-0.4
616
Normal
-0.4
534
Normal
-0.4
1026
Normal
-0.4
147
Tumor
-0.4
463
Tumor
-0.4
513
Tumor
-0.5
484
Normal
-0.5
1025
Tumor
-0.5
515
Tumor
-0.5
361
Tumor
-0.5
746
Normal
-0.5
863
Tumor
-0.5
482
Normal
-0.5
647
Tumor
-0.5
861
Tumor
-0.5
428
Normal
-0.5
413
Tumor
-0.5
473
Tumor
-0.5
477
Tumor
-0.5
221
Tumor
-0.5
391
Tumor
-0.5
431
Tumor
-0.5
135
Tumor
-0.5
873
Tumor
-0.5
955
Tumor
-0.6
427
Tumor
-0.6
557
Tumor
-0.6
358
Normal
-0.6
727
Tumor
-0.6
465
Tumor
-0.6
867
Tumor
-0.6
343
Tumor
-0.6
777
Tumor
-0.6
353
Tumor
-0.6
571
Tumor
-0.6
573
Tumor
-0.6
665
Tumor
-0.6
267
Tumor
-0.6
518
Normal
-0.7
615
Tumor
-0.7
227
Tumor
-0.7
342
Normal
-0.7
851
Tumor
-0.7
983
Tumor
-0.7
724
Normal
-0.7
443
Tumor
-0.7
481
Tumor
-0.8
911
Tumor
-0.8
127
Tumor
-0.8
1043
Tumor
-0.8
965
Tumor
-0.8
737
Tumor
-0.8
451
Tumor
-0.8
915
Tumor
-0.9
445
Tumor
-0.9
1021
Tumor
-0.9
661
Tumor
-0.9
497
Tumor
-0.9
527
Tumor
-0.9
937
Tumor
-0.9
663
Tumor
-0.9
341
Tumor
-0.9
1041
Tumor
-1.0
257
Tumor
-1.0
567
Tumor
-1.0
741
Tumor
-1.0
977
Tumor
-1.0
755
Tumor
-1.0
411
Tumor
-1.1
517
Tumor
-1.1
1027
Tumor
-1.1
953
Tumor
-1.1
125
Tumor
-1.2
815
Tumor
-1.2
685
Tumor
-1.2
957
Tumor
-1.2
981
Tumor
-1.2
635
Tumor
-1.2
745
Tumor
-1.3
523
Tumor
-1.3
951
Tumor
-1.3
425
Tumor
-1.3
123
Tumor
-1.3
967
Tumor
-1.3
865
Tumor
-1.4
1013
Tumor
-1.4
743
Tumor
-1.4
533
Tumor
-1.6
285
Tumor
-1.6
131
Tumor
-1.8
357
Tumor
-1.9
351
Tumor
-2.5
112
Tumor
-4.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
