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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRPC4AP is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
76.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
71.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
61.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
61.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
59.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
57.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
54.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
54.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
53.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
53.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
52.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
52.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
51.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
51.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
49.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
49.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
48.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
48.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
48.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
47.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
46.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
46.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
46.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
45.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
45.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
45.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
45.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
45.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
44.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
44.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
44.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
44.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
43.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
43.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
43.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
43.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
43.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
43.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
42.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
41.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
40.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
40.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
40.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
40.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
40.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
40.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
39.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
39.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
39.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
39.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
39.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
39.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
39.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
39.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
39.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
38.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
38.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
37.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
37.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
37.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
37.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
37.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
36.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
36.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
36.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
36.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
35.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
35.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
35.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
35.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
35.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
35.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
35.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
35.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
34.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
34.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
34.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
34.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
33.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
33.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
33.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
33.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
33.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
32.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
32.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
32.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
32.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
31.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
31.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
31.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
31.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
31.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
30.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
30.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
30.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
30.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
30.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
30.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
30.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
30.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
29.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
29.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
29.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
29.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
29.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
28.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
28.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
28.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
28.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
27.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
27.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
27.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
27.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
27.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
27.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
27.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
26.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
26.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
25.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
25.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
25.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
24.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
24.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
24.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
23.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
23.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
23.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
22.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
22.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
22.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
21.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
20.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
20.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
20.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
13.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRPC4AP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.4
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
68.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
63.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
60.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
52.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
50.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
49.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
49.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
49.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
48.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
47.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
46.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
46.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
46.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
46.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
45.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
45.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
45.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
45.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
44.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
44.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
44.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
43.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
43.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
42.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
42.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
42.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
42.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
42.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
42.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
42.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
41.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
41.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
41.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
41.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
41.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
41.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
40.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
40.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
40.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
39.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
39.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
39.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
39.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
39.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
39.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
39.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
39.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
38.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
38.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
38.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
37.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
37.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
37.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
37.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
36.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
36.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
36.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
36.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
36.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
35.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
35.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
35.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
35.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
35.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
34.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
34.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
34.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
34.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
34.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
34.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
34.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
34.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
34.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
33.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
33.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
33.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
33.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
32.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
32.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
32.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
32.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
32.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
32.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
32.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
32.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
32.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
32.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
32.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
32.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
32.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
31.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
31.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
31.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
31.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
30.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
30.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
30.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
30.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
30.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
30.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
30.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
29.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
29.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
29.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
29.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
29.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
29.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
29.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
28.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
28.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
28.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
28.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
28.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
28.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
27.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
27.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
27.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
27.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
27.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
27.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
26.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
26.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
25.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
25.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
24.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
24.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
23.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
23.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
21.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.2
351
Tumor
1.2
967
Tumor
1.0
925
Tumor
0.8
428
Normal
0.7
468
Normal
0.7
451
Tumor
0.6
123
Tumor
0.6
217
Tumor
0.6
466
Normal
0.6
533
Tumor
0.6
456
Normal
0.6
464
Normal
0.6
223
Tumor
0.5
426
Normal
0.5
917
Tumor
0.5
813
Tumor
0.5
465
Tumor
0.5
535
Tumor
0.5
446
Normal
0.5
387
Tumor
0.5
145
Tumor
0.5
955
Tumor
0.5
341
Tumor
0.5
432
Normal
0.5
413
Tumor
0.4
414
Normal
0.4
435
Tumor
0.4
187
Tumor
0.4
982
Normal
0.4
635
Tumor
0.4
978
Normal
0.4
424
Normal
0.4
745
Tumor
0.4
814
Normal
0.4
517
Tumor
0.4
436
Normal
0.4
957
Tumor
0.3
422
Normal
0.3
513
Tumor
0.3
627
Tumor
0.3
963
Tumor
0.3
191
Tumor
0.3
953
Tumor
0.3
285
Tumor
0.3
125
Tumor
0.3
943
Tumor
0.3
617
Tumor
0.3
467
Tumor
0.3
331
Tumor
0.3
618
Normal
0.3
865
Tumor
0.3
433
Tumor
0.3
641
Tumor
0.3
1031
Tumor
0.2
221
Tumor
0.2
615
Tumor
0.2
186
Normal
0.2
391
Tumor
0.2
937
Tumor
0.2
213
Tumor
0.2
636
Normal
0.2
956
Normal
0.2
477
Tumor
0.2
385
Tumor
0.2
218
Normal
0.2
147
Tumor
0.2
228
Normal
0.2
171
Tumor
0.2
981
Tumor
0.2
196
Normal
0.2
616
Normal
0.2
113
Tumor
0.2
355
Tumor
0.2
528
Normal
0.2
423
Tumor
0.2
1025
Tumor
0.2
353
Tumor
0.2
1045
Tumor
0.2
452
Normal
0.2
488
Normal
0.2
135
Tumor
0.2
1026
Normal
0.2
742
Normal
0.2
394
Normal
0.2
195
Tumor
0.2
462
Normal
0.2
938
Normal
0.2
267
Tumor
0.2
642
Normal
0.2
1022
Normal
0.1
127
Tumor
0.1
227
Tumor
0.1
415
Tumor
0.1
958
Normal
0.1
1042
Normal
0.1
448
Normal
0.1
444
Normal
0.1
661
Tumor
0.1
951
Tumor
0.1
628
Normal
0.1
975
Tumor
0.1
138
Normal
0.1
188
Normal
0.1
861
Tumor
0.1
1046
Normal
0.1
445
Tumor
0.1
873
Tumor
0.1
573
Tumor
0.1
222
Normal
0.1
515
Tumor
0.1
482
Normal
0.1
698
Normal
0.1
1032
Normal
0.1
567
Tumor
0.1
1044
Normal
0.1
815
Tumor
0.1
524
Normal
0.1
1013
Tumor
0.1
262
Normal
0.1
1028
Normal
0.1
214
Normal
0.1
474
Normal
0.1
298
Normal
0.1
964
Normal
0.1
727
Tumor
0.1
192
Normal
0.1
944
Normal
0.1
396
Normal
0.1
471
Tumor
0.0
162
Normal
0.0
724
Normal
0.0
461
Tumor
0.0
272
Normal
0.0
1016
Normal
0.0
224
Normal
0.0
284
Normal
0.0
984
Normal
0.0
258
Normal
0.0
455
Tumor
0.0
352
Normal
0.0
124
Normal
0.0
363
Tumor
0.0
111
Normal
0.0
148
Normal
0.0
286
Normal
0.0
327
Tumor
0.0
463
Tumor
0.0
1014
Normal
0.0
926
Normal
0.0
314
Normal
0.0
112
Tumor
0.0
498
Normal
0.0
212
Normal
0.0
786
Normal
0.0
685
Tumor
0.0
388
Normal
0.0
858
Normal
0.0
141
Tumor
0.0
916
Normal
0.0
232
Normal
0.0
443
Tumor
0.0
172
Normal
0.0
722
Normal
0.0
1015
Tumor
0.0
1027
Tumor
0.0
472
Normal
0.0
411
Tumor
0.0
746
Normal
0.0
1021
Tumor
0.0
851
Tumor
0.0
132
Normal
0.0
954
Normal
0.0
146
Normal
0.0
137
Tumor
0.0
332
Normal
0.0
494
Normal
0.0
328
Normal
-0.1
434
Normal
-0.1
741
Tumor
-0.1
114
Normal
-0.1
278
Normal
-0.1
857
Tumor
-0.1
126
Normal
-0.1
966
Normal
-0.1
342
Normal
-0.1
1043
Tumor
-0.1
395
Tumor
-0.1
744
Normal
-0.1
313
Tumor
-0.1
534
Normal
-0.1
386
Normal
-0.1
723
Tumor
-0.1
823
Tumor
-0.1
728
Normal
-0.1
268
Normal
-0.1
568
Normal
-0.1
297
Tumor
-0.1
261
Tumor
-0.1
922
Normal
-0.1
484
Normal
-0.1
356
Normal
-0.1
868
Normal
-0.1
923
Tumor
-0.1
392
Normal
-0.1
412
Normal
-0.1
364
Normal
-0.1
1041
Tumor
-0.1
924
Normal
-0.1
416
Normal
-0.1
447
Tumor
-0.1
257
Tumor
-0.1
525
Tumor
-0.1
483
Tumor
-0.1
136
Normal
-0.2
545
Tumor
-0.2
421
Tumor
-0.2
128
Normal
-0.2
866
Normal
-0.2
824
Normal
-0.2
527
Tumor
-0.2
983
Tumor
-0.2
425
Tumor
-0.2
312
Normal
-0.2
671
Tumor
-0.2
755
Tumor
-0.2
864
Normal
-0.2
343
Tumor
-0.2
536
Normal
-0.2
647
Tumor
-0.2
431
Tumor
-0.2
563
Tumor
-0.2
478
Normal
-0.2
283
Tumor
-0.2
487
Tumor
-0.2
952
Normal
-0.2
185
Tumor
-0.2
976
Normal
-0.2
777
Tumor
-0.2
481
Tumor
-0.2
473
Tumor
-0.2
867
Tumor
-0.2
571
Tumor
-0.2
863
Tumor
-0.2
427
Tumor
-0.2
918
Normal
-0.2
344
Normal
-0.2
554
Normal
-0.2
785
Tumor
-0.2
874
Normal
-0.2
574
Normal
-0.2
354
Normal
-0.2
491
Tumor
-0.2
968
Normal
-0.3
526
Normal
-0.3
852
Normal
-0.3
558
Normal
-0.3
713
Tumor
-0.3
311
Tumor
-0.3
514
Normal
-0.3
816
Normal
-0.3
743
Tumor
-0.3
977
Tumor
-0.3
818
Normal
-0.3
564
Normal
-0.3
358
Normal
-0.3
393
Tumor
-0.3
557
Tumor
-0.3
211
Tumor
-0.3
862
Normal
-0.3
738
Normal
-0.3
756
Normal
-0.3
778
Normal
-0.3
553
Tumor
-0.3
271
Tumor
-0.3
537
Tumor
-0.3
161
Tumor
-0.3
663
Tumor
-0.4
492
Normal
-0.4
142
Normal
-0.4
497
Tumor
-0.4
546
Normal
-0.4
915
Tumor
-0.4
516
Normal
-0.4
665
Tumor
-0.4
672
Normal
-0.4
518
Normal
-0.5
817
Tumor
-0.5
715
Tumor
-0.5
662
Normal
-0.5
277
Tumor
-0.5
737
Tumor
-0.5
648
Normal
-0.5
538
Normal
-0.5
493
Tumor
-0.5
721
Tumor
-0.5
666
Normal
-0.6
131
Tumor
-0.6
572
Normal
-0.6
231
Tumor
-0.6
714
Normal
-0.6
523
Tumor
-0.6
664
Normal
-0.7
695
Tumor
-0.7
357
Tumor
-0.7
921
Tumor
-0.7
697
Tumor
-0.7
686
Normal
-0.8
716
Normal
-0.9
696
Normal
-1.0
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
