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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCIF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
42.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
36.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
30.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
29.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
23.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
21.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
18.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
17.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCIF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.5
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
877
Tumor
0.9
695
Tumor
0.9
357
Tumor
0.9
385
Tumor
0.7
743
Tumor
0.7
545
Tumor
0.7
815
Tumor
0.7
211
Tumor
0.6
351
Tumor
0.6
497
Tumor
0.6
921
Tumor
0.6
313
Tumor
0.6
937
Tumor
0.6
943
Tumor
0.6
331
Tumor
0.6
411
Tumor
0.6
112
Tumor
0.6
1031
Tumor
0.5
817
Tumor
0.5
647
Tumor
0.5
277
Tumor
0.5
463
Tumor
0.5
271
Tumor
0.4
425
Tumor
0.4
523
Tumor
0.4
663
Tumor
0.4
553
Tumor
0.4
431
Tumor
0.4
343
Tumor
0.4
977
Tumor
0.4
487
Tumor
0.4
865
Tumor
0.4
465
Tumor
0.4
813
Tumor
0.4
1013
Tumor
0.4
341
Tumor
0.4
192
Normal
0.4
981
Tumor
0.4
671
Tumor
0.4
641
Tumor
0.4
415
Tumor
0.4
883
Tumor
0.4
873
Tumor
0.4
131
Tumor
0.4
221
Tumor
0.4
951
Tumor
0.4
925
Tumor
0.3
917
Tumor
0.3
443
Tumor
0.3
535
Tumor
0.3
447
Tumor
0.3
1045
Tumor
0.3
355
Tumor
0.3
983
Tumor
0.3
536
Normal
0.3
483
Tumor
0.3
297
Tumor
0.3
498
Normal
0.3
524
Normal
0.3
715
Tumor
0.2
665
Tumor
0.2
161
Tumor
0.2
814
Normal
0.2
141
Tumor
0.2
126
Normal
0.2
127
Tumor
0.2
957
Tumor
0.2
615
Tumor
0.2
1046
Normal
0.2
445
Tumor
0.2
492
Normal
0.2
123
Tumor
0.2
342
Normal
0.2
744
Normal
0.2
953
Tumor
0.2
427
Tumor
0.2
383
Tumor
0.2
636
Normal
0.2
554
Normal
0.2
975
Tumor
0.2
538
Normal
0.2
145
Tumor
0.2
984
Normal
0.2
344
Normal
0.2
516
Normal
0.2
685
Tumor
0.2
867
Tumor
0.2
412
Normal
0.2
721
Tumor
0.2
493
Tumor
0.2
965
Tumor
0.1
444
Normal
0.1
881
Tumor
0.1
135
Tumor
0.1
513
Tumor
0.1
1014
Normal
0.1
1015
Tumor
0.1
661
Tumor
0.1
114
Normal
0.1
823
Tumor
0.1
1044
Normal
0.1
473
Tumor
0.1
954
Normal
0.1
128
Normal
0.1
358
Normal
0.1
191
Tumor
0.1
878
Normal
0.1
311
Tumor
0.1
664
Normal
0.1
737
Tumor
0.1
963
Tumor
0.1
298
Normal
0.1
125
Tumor
0.1
354
Normal
0.1
124
Normal
0.1
478
Normal
0.1
261
Tumor
0.1
375
Tumor
0.1
952
Normal
0.1
923
Tumor
0.1
698
Normal
0.1
666
Normal
0.1
467
Tumor
0.1
432
Normal
0.1
563
Tumor
0.1
146
Normal
0.1
1043
Tumor
0.1
416
Normal
0.1
777
Tumor
0.1
384
Normal
0.1
967
Tumor
0.1
434
Normal
0.0
857
Tumor
0.0
185
Tumor
0.0
388
Normal
0.0
268
Normal
0.0
111
Normal
0.0
518
Normal
0.0
162
Normal
0.0
396
Normal
0.0
517
Tumor
0.0
955
Tumor
0.0
1025
Tumor
0.0
635
Tumor
0.0
785
Tumor
0.0
283
Tumor
0.0
452
Normal
0.0
756
Normal
0.0
627
Tumor
0.0
461
Tumor
0.0
363
Tumor
0.0
142
Normal
0.0
915
Tumor
0.0
455
Tumor
0.0
387
Tumor
0.0
982
Normal
0.0
1028
Normal
0.0
491
Tumor
0.0
741
Tumor
0.0
978
Normal
0.0
188
Normal
0.0
436
Normal
0.0
924
Normal
0.0
312
Normal
0.0
477
Tumor
0.0
716
Normal
0.0
217
Tumor
0.0
672
Normal
0.0
863
Tumor
0.0
618
Normal
0.0
213
Tumor
0.0
132
Normal
0.0
364
Normal
0.0
662
Normal
0.0
386
Normal
0.0
352
Normal
0.0
113
Tumor
0.0
515
Tumor
0.0
628
Normal
0.0
938
Normal
0.0
494
Normal
0.0
956
Normal
0.0
852
Normal
0.0
471
Tumor
0.0
466
Normal
0.0
395
Tumor
0.0
484
Normal
0.0
472
Normal
0.0
148
Normal
0.0
778
Normal
0.0
648
Normal
0.0
456
Normal
0.0
558
Normal
0.0
278
Normal
0.0
914
Normal
0.0
526
Normal
0.0
392
Normal
0.0
423
Tumor
0.0
186
Normal
0.0
527
Tumor
0.0
572
Normal
0.0
332
Normal
0.0
446
Normal
0.0
137
Tumor
0.0
642
Normal
0.0
448
Normal
0.0
262
Normal
0.0
462
Normal
0.0
356
Normal
0.0
328
Normal
0.0
755
Tumor
-0.1
136
Normal
-0.1
944
Normal
-0.1
1016
Normal
-0.1
376
Normal
-0.1
913
Tumor
-0.1
746
Normal
-0.1
196
Normal
-0.1
1041
Tumor
-0.1
285
Tumor
-0.1
786
Normal
-0.1
616
Normal
-0.1
966
Normal
-0.1
916
Normal
-0.1
327
Tumor
-0.1
816
Normal
-0.1
686
Normal
-0.1
464
Normal
-0.1
968
Normal
-0.1
488
Normal
-0.1
824
Normal
-0.1
433
Tumor
-0.1
258
Normal
-0.1
172
Normal
-0.1
714
Normal
-0.1
368
Normal
-0.1
365
Tumor
-0.1
413
Tumor
-0.1
546
Normal
-0.1
882
Normal
-0.1
224
Normal
-0.1
394
Normal
-0.1
818
Normal
-0.1
267
Tumor
-0.1
426
Normal
-0.1
138
Normal
-0.1
874
Normal
-0.1
713
Tumor
-0.1
314
Normal
-0.1
424
Normal
-0.1
884
Normal
-0.1
727
Tumor
-0.1
1032
Normal
-0.1
367
Tumor
-0.1
474
Normal
-0.1
976
Normal
-0.1
272
Normal
-0.1
858
Normal
-0.1
738
Normal
-0.1
861
Tumor
-0.1
428
Normal
-0.1
912
Normal
-0.1
564
Normal
-0.1
353
Tumor
-0.1
514
Normal
-0.1
414
Normal
-0.1
728
Normal
-0.1
482
Normal
-0.1
922
Normal
-0.1
222
Normal
-0.1
742
Normal
-0.2
435
Tumor
-0.2
568
Normal
-0.2
366
Normal
-0.2
286
Normal
-0.2
722
Normal
-0.2
696
Normal
-0.2
393
Tumor
-0.2
958
Normal
-0.2
187
Tumor
-0.2
964
Normal
-0.2
534
Normal
-0.2
1026
Normal
-0.2
361
Tumor
-0.2
617
Tumor
-0.2
862
Normal
-0.2
195
Tumor
-0.2
362
Normal
-0.2
421
Tumor
-0.2
232
Normal
-0.2
866
Normal
-0.2
574
Normal
-0.2
525
Tumor
-0.2
468
Normal
-0.2
533
Tumor
-0.2
218
Normal
-0.2
147
Tumor
-0.2
481
Tumor
-0.2
537
Tumor
-0.2
864
Normal
-0.2
723
Tumor
-0.2
1042
Normal
-0.2
212
Normal
-0.2
422
Normal
-0.2
918
Normal
-0.2
214
Normal
-0.2
451
Tumor
-0.3
284
Normal
-0.3
724
Normal
-0.3
926
Normal
-0.3
573
Tumor
-0.3
1022
Normal
-0.3
227
Tumor
-0.3
697
Tumor
-0.3
391
Tumor
-0.3
1021
Tumor
-0.3
223
Tumor
-0.3
1027
Tumor
-0.3
231
Tumor
-0.3
571
Tumor
-0.4
257
Tumor
-0.4
851
Tumor
-0.4
228
Normal
-0.4
911
Tumor
-0.4
567
Tumor
-0.4
528
Normal
-0.4
745
Tumor
-0.4
868
Normal
-0.4
171
Tumor
-0.5
557
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.