We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC23A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
62.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
58.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
55.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
50.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
50.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
46.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
44.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
44.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
44.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
44.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
43.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
42.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
41.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
40.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
40.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
39.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
39.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
39.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
38.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
37.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
37.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
37.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
36.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
35.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
35.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
35.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
34.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
33.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
32.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
32.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
31.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
31.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
31.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
31.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
31.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
31.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
30.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
30.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
30.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
30.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
30.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
29.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
29.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
29.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
28.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
27.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
27.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
27.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
27.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
25.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
25.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
21.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC23A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.6
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
83.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
70.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
69.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
55.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
55.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
55.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
53.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
51.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
47.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
47.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
46.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
44.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
44.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
43.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
42.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
41.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
39.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
39.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
39.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
38.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
37.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
36.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
36.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
35.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
35.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
35.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
35.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
34.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
34.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
33.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
33.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
32.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
32.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
32.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
32.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
31.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
31.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
30.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
30.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
30.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
30.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
29.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
29.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
29.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
29.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
28.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
28.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
27.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
25.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
25.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
24.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
22.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
20.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.7
937
Tumor
0.6
745
Tumor
0.5
327
Tumor
0.5
123
Tumor
0.4
746
Normal
0.4
113
Tumor
0.4
1025
Tumor
0.4
111
Normal
0.4
868
Normal
0.3
911
Tumor
0.3
648
Normal
0.3
728
Normal
0.3
713
Tumor
0.3
451
Tumor
0.3
285
Tumor
0.3
145
Tumor
0.3
436
Normal
0.3
148
Normal
0.3
742
Normal
0.3
128
Normal
0.3
218
Normal
0.3
114
Normal
0.3
172
Normal
0.3
487
Tumor
0.3
685
Tumor
0.3
222
Normal
0.2
786
Normal
0.2
642
Normal
0.2
618
Normal
0.2
955
Tumor
0.2
162
Normal
0.2
738
Normal
0.2
664
Normal
0.2
466
Normal
0.2
628
Normal
0.2
365
Tumor
0.2
464
Normal
0.2
132
Normal
0.2
518
Normal
0.2
526
Normal
0.2
396
Normal
0.2
414
Normal
0.2
428
Normal
0.2
462
Normal
0.2
468
Normal
0.2
258
Normal
0.2
424
Normal
0.2
452
Normal
0.2
446
Normal
0.2
636
Normal
0.2
553
Tumor
0.2
353
Tumor
0.2
137
Tumor
0.2
533
Tumor
0.2
1028
Normal
0.2
914
Normal
0.2
874
Normal
0.2
564
Normal
0.2
1016
Normal
0.2
824
Normal
0.2
196
Normal
0.2
568
Normal
0.2
755
Tumor
0.2
952
Normal
0.2
426
Normal
0.2
617
Tumor
0.2
136
Normal
0.2
915
Tumor
0.2
723
Tumor
0.2
328
Normal
0.2
412
Normal
0.1
214
Normal
0.1
616
Normal
0.1
456
Normal
0.1
851
Tumor
0.1
278
Normal
0.1
921
Tumor
0.1
472
Normal
0.1
727
Tumor
0.1
1044
Normal
0.1
884
Normal
0.1
482
Normal
0.1
432
Normal
0.1
474
Normal
0.1
272
Normal
0.1
662
Normal
0.1
1041
Tumor
0.1
186
Normal
0.1
816
Normal
0.1
362
Normal
0.1
232
Normal
0.1
286
Normal
0.1
388
Normal
0.1
878
Normal
0.1
271
Tumor
0.1
422
Normal
0.1
1022
Normal
0.1
1026
Normal
0.1
572
Normal
0.1
376
Normal
0.1
722
Normal
0.1
368
Normal
0.1
554
Normal
0.1
534
Normal
0.1
221
Tumor
0.1
696
Normal
0.1
714
Normal
0.1
356
Normal
0.1
981
Tumor
0.1
138
Normal
0.1
866
Normal
0.1
864
Normal
0.1
394
Normal
0.1
1043
Tumor
0.1
778
Normal
0.1
858
Normal
0.1
913
Tumor
0.1
392
Normal
0.1
627
Tumor
0.1
968
Normal
0.1
268
Normal
0.1
777
Tumor
0.1
481
Tumor
0.1
358
Normal
0.1
558
Normal
0.1
212
Normal
0.1
416
Normal
0.1
262
Normal
0.1
188
Normal
0.1
528
Normal
0.1
191
Tumor
0.1
918
Normal
0.1
862
Normal
0.1
142
Normal
0.1
882
Normal
0.1
698
Normal
0.1
1045
Tumor
0.1
956
Normal
0.1
314
Normal
0.1
228
Normal
0.1
1032
Normal
0.1
574
Normal
0.1
363
Tumor
0.1
126
Normal
0.1
195
Tumor
0.1
686
Normal
0.1
938
Normal
0.0
1042
Normal
0.0
912
Normal
0.0
964
Normal
0.0
448
Normal
0.0
124
Normal
0.0
312
Normal
0.0
141
Tumor
0.0
477
Tumor
0.0
342
Normal
0.0
615
Tumor
0.0
344
Normal
0.0
818
Normal
0.0
386
Normal
0.0
666
Normal
0.0
187
Tumor
0.0
257
Tumor
0.0
298
Normal
0.0
922
Normal
0.0
1014
Normal
0.0
434
Normal
0.0
217
Tumor
0.0
332
Normal
0.0
514
Normal
0.0
744
Normal
0.0
965
Tumor
0.0
978
Normal
0.0
984
Normal
0.0
284
Normal
0.0
976
Normal
0.0
395
Tumor
0.0
697
Tumor
0.0
366
Normal
0.0
721
Tumor
0.0
716
Normal
0.0
484
Normal
0.0
494
Normal
0.0
146
Normal
0.0
977
Tumor
0.0
944
Normal
0.0
352
Normal
0.0
571
Tumor
0.0
1021
Tumor
0.0
813
Tumor
0.0
261
Tumor
0.0
1015
Tumor
0.0
923
Tumor
0.0
1046
Normal
0.0
546
Normal
0.0
982
Normal
0.0
756
Normal
0.0
924
Normal
0.0
488
Normal
0.0
926
Normal
0.0
852
Normal
0.0
695
Tumor
0.0
527
Tumor
0.0
354
Normal
0.0
421
Tumor
0.0
857
Tumor
0.0
741
Tumor
0.0
223
Tumor
-0.1
815
Tumor
-0.1
672
Normal
-0.1
467
Tumor
-0.1
192
Normal
-0.1
641
Tumor
-0.1
435
Tumor
-0.1
135
Tumor
-0.1
423
Tumor
-0.1
492
Normal
-0.1
523
Tumor
-0.1
873
Tumor
-0.1
515
Tumor
-0.1
444
Normal
-0.1
635
Tumor
-0.1
817
Tumor
-0.1
954
Normal
-0.1
413
Tumor
-0.1
863
Tumor
-0.1
966
Normal
-0.1
147
Tumor
-0.1
461
Tumor
-0.1
916
Normal
-0.1
384
Normal
-0.1
443
Tumor
-0.1
983
Tumor
-0.1
513
Tumor
-0.1
227
Tumor
-0.1
224
Normal
-0.1
127
Tumor
-0.1
867
Tumor
-0.1
465
Tumor
-0.1
883
Tumor
-0.1
383
Tumor
-0.1
958
Normal
-0.1
524
Normal
-0.1
823
Tumor
-0.1
364
Normal
-0.1
665
Tumor
-0.1
516
Normal
-0.1
185
Tumor
-0.1
387
Tumor
-0.1
537
Tumor
-0.2
925
Tumor
-0.2
785
Tumor
-0.2
814
Normal
-0.2
967
Tumor
-0.2
171
Tumor
-0.2
433
Tumor
-0.2
861
Tumor
-0.2
411
Tumor
-0.2
881
Tumor
-0.2
877
Tumor
-0.2
865
Tumor
-0.2
112
Tumor
-0.2
125
Tumor
-0.2
743
Tumor
-0.2
277
Tumor
-0.2
231
Tumor
-0.2
563
Tumor
-0.2
361
Tumor
-0.2
161
Tumor
-0.2
538
Normal
-0.2
536
Normal
-0.2
498
Normal
-0.2
391
Tumor
-0.2
431
Tumor
-0.2
393
Tumor
-0.2
567
Tumor
-0.2
478
Normal
-0.2
463
Tumor
-0.2
471
Tumor
-0.2
1031
Tumor
-0.2
951
Tumor
-0.2
267
Tumor
-0.2
415
Tumor
-0.2
715
Tumor
-0.3
963
Tumor
-0.3
445
Tumor
-0.3
213
Tumor
-0.3
427
Tumor
-0.3
737
Tumor
-0.3
355
Tumor
-0.3
455
Tumor
-0.3
661
Tumor
-0.3
724
Normal
-0.3
447
Tumor
-0.3
557
Tumor
-0.3
497
Tumor
-0.3
517
Tumor
-0.3
535
Tumor
-0.3
357
Tumor
-0.3
367
Tumor
-0.4
647
Tumor
-0.4
341
Tumor
-0.4
975
Tumor
-0.4
917
Tumor
-0.4
491
Tumor
-0.4
313
Tumor
-0.4
283
Tumor
-0.4
493
Tumor
-0.4
131
Tumor
-0.4
425
Tumor
-0.4
375
Tumor
-0.4
943
Tumor
-0.4
1013
Tumor
-0.4
525
Tumor
-0.5
311
Tumor
-0.5
663
Tumor
-0.5
957
Tumor
-0.5
953
Tumor
-0.5
297
Tumor
-0.5
343
Tumor
-0.5
545
Tumor
-0.6
671
Tumor
-0.6
473
Tumor
-0.6
483
Tumor
-0.6
331
Tumor
-0.6
351
Tumor
-0.6
385
Tumor
-0.7
573
Tumor
-0.7
211
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
