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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TM9SF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
75.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
56.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
54.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
51.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
47.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
47.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
45.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
40.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
39.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
35.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
34.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
33.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
31.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
30.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
29.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
28.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
26.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
26.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
26.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
25.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
24.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
24.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
21.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TM9SF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.4
Number of samples
231
Samples
Sample
Description
TPM
DO48681
0 years, male, NA, stage:2, alive, 900 days
97.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
72.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
55.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
54.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
51.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
47.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
40.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
40.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
39.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
39.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
39.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
39.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
36.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
36.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
35.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
35.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
34.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
34.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
34.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
34.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
34.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
33.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
33.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
33.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
33.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
33.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
32.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
32.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
32.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
32.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
32.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
31.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
31.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
31.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
31.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
30.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
29.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
29.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
28.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
28.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
28.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
27.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
27.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
27.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
27.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
26.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
25.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
25.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
24.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
23.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
22.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
21.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
21.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
20.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
527
Tumor
1.4
471
Tumor
0.9
983
Tumor
0.9
533
Tumor
0.9
411
Tumor
0.9
525
Tumor
0.8
357
Tumor
0.8
923
Tumor
0.8
477
Tumor
0.7
1015
Tumor
0.7
1027
Tumor
0.7
445
Tumor
0.7
937
Tumor
0.7
497
Tumor
0.7
813
Tumor
0.6
261
Tumor
0.6
685
Tumor
0.6
1043
Tumor
0.6
911
Tumor
0.6
913
Tumor
0.6
515
Tumor
0.5
277
Tumor
0.5
635
Tumor
0.5
865
Tumor
0.5
571
Tumor
0.5
461
Tumor
0.5
823
Tumor
0.5
1041
Tumor
0.5
713
Tumor
0.5
427
Tumor
0.5
327
Tumor
0.5
553
Tumor
0.5
487
Tumor
0.5
981
Tumor
0.5
777
Tumor
0.5
873
Tumor
0.5
745
Tumor
0.5
921
Tumor
0.5
1013
Tumor
0.4
557
Tumor
0.4
617
Tumor
0.4
951
Tumor
0.4
627
Tumor
0.4
413
Tumor
0.4
451
Tumor
0.4
814
Normal
0.4
383
Tumor
0.4
815
Tumor
0.4
187
Tumor
0.4
257
Tumor
0.4
267
Tumor
0.4
463
Tumor
0.4
395
Tumor
0.4
213
Tumor
0.4
313
Tumor
0.4
112
Tumor
0.4
221
Tumor
0.4
227
Tumor
0.3
127
Tumor
0.3
641
Tumor
0.3
1025
Tumor
0.3
493
Tumor
0.3
483
Tumor
0.3
863
Tumor
0.3
145
Tumor
0.3
433
Tumor
0.3
975
Tumor
0.3
755
Tumor
0.3
481
Tumor
0.3
353
Tumor
0.3
283
Tumor
0.3
636
Normal
0.3
217
Tumor
0.3
554
Normal
0.2
1031
Tumor
0.2
467
Tumor
0.2
967
Tumor
0.2
393
Tumor
0.2
545
Tumor
0.2
665
Tumor
0.2
697
Tumor
0.2
857
Tumor
0.2
526
Normal
0.2
867
Tumor
0.2
523
Tumor
0.2
558
Normal
0.2
223
Tumor
0.2
615
Tumor
0.2
391
Tumor
0.2
113
Tumor
0.2
861
Tumor
0.2
537
Tumor
0.2
195
Tumor
0.2
385
Tumor
0.2
978
Normal
0.2
447
Tumor
0.2
192
Normal
0.2
365
Tumor
0.2
355
Tumor
0.2
271
Tumor
0.2
977
Tumor
0.2
137
Tumor
0.2
953
Tumor
0.2
727
Tumor
0.2
721
Tumor
0.2
616
Normal
0.2
728
Normal
0.1
663
Tumor
0.1
963
Tumor
0.1
423
Tumor
0.1
125
Tumor
0.1
491
Tumor
0.1
343
Tumor
0.1
661
Tumor
0.1
817
Tumor
0.1
534
Normal
0.1
218
Normal
0.1
883
Tumor
0.1
368
Normal
0.1
741
Tumor
0.1
1032
Normal
0.1
1028
Normal
0.1
737
Tumor
0.1
957
Tumor
0.1
944
Normal
0.1
285
Tumor
0.1
513
Tumor
0.1
642
Normal
0.1
443
Tumor
0.1
141
Tumor
0.1
715
Tumor
0.1
618
Normal
0.1
852
Normal
0.1
514
Normal
0.1
958
Normal
0.1
286
Normal
0.1
982
Normal
0.1
421
Tumor
0.1
222
Normal
0.1
528
Normal
0.1
228
Normal
0.1
431
Tumor
0.1
628
Normal
0.1
1014
Normal
0.1
185
Tumor
0.1
968
Normal
0.1
214
Normal
0.1
1022
Normal
0.1
743
Tumor
0.1
964
Normal
0.0
311
Tumor
0.0
1045
Tumor
0.0
564
Normal
0.0
696
Normal
0.0
955
Tumor
0.0
984
Normal
0.0
954
Normal
0.0
536
Normal
0.0
572
Normal
0.0
563
Tumor
0.0
524
Normal
0.0
455
Tumor
0.0
448
Normal
0.0
232
Normal
0.0
212
Normal
0.0
785
Tumor
0.0
938
Normal
0.0
538
Normal
0.0
196
Normal
0.0
1016
Normal
0.0
468
Normal
0.0
647
Tumor
0.0
724
Normal
0.0
648
Normal
0.0
664
Normal
0.0
786
Normal
0.0
191
Tumor
0.0
464
Normal
0.0
662
Normal
0.0
488
Normal
0.0
877
Tumor
0.0
568
Normal
0.0
926
Normal
0.0
268
Normal
0.0
126
Normal
0.0
966
Normal
0.0
722
Normal
0.0
462
Normal
0.0
672
Normal
0.0
456
Normal
0.0
131
Tumor
0.0
1044
Normal
0.0
452
Normal
0.0
494
Normal
0.0
816
Normal
0.0
344
Normal
0.0
361
Tumor
0.0
918
Normal
0.0
686
Normal
0.0
446
Normal
0.0
914
Normal
0.0
138
Normal
0.0
414
Normal
0.0
915
Tumor
0.0
868
Normal
0.0
824
Normal
0.0
976
Normal
0.0
435
Tumor
0.0
518
Normal
0.0
392
Normal
0.0
387
Tumor
0.0
1042
Normal
-0.1
342
Normal
-0.1
778
Normal
-0.1
111
Normal
-0.1
135
Tumor
-0.1
142
Normal
-0.1
351
Tumor
-0.1
858
Normal
-0.1
466
Normal
-0.1
132
Normal
-0.1
484
Normal
-0.1
1026
Normal
-0.1
161
Tumor
-0.1
375
Tumor
-0.1
363
Tumor
-0.1
358
Normal
-0.1
862
Normal
-0.1
284
Normal
-0.1
917
Tumor
-0.1
396
Normal
-0.1
415
Tumor
-0.1
428
Normal
-0.1
695
Tumor
-0.1
356
Normal
-0.1
866
Normal
-0.1
114
Normal
-0.1
535
Tumor
-0.1
474
Normal
-0.1
434
Normal
-0.1
573
Tumor
-0.1
738
Normal
-0.1
422
Normal
-0.1
922
Normal
-0.1
884
Normal
-0.1
714
Normal
-0.1
262
Normal
-0.1
123
Tumor
-0.1
723
Tumor
-0.1
412
Normal
-0.1
498
Normal
-0.1
354
Normal
-0.1
136
Normal
-0.1
386
Normal
-0.1
425
Tumor
-0.1
128
Normal
-0.1
124
Normal
-0.1
952
Normal
-0.1
546
Normal
-0.1
851
Tumor
-0.1
516
Normal
-0.1
146
Normal
-0.1
388
Normal
-0.1
482
Normal
-0.1
666
Normal
-0.1
916
Normal
-0.1
332
Normal
-0.1
864
Normal
-0.1
912
Normal
-0.1
224
Normal
-0.1
874
Normal
-0.1
328
Normal
-0.1
314
Normal
-0.1
756
Normal
-0.1
956
Normal
-0.1
384
Normal
-0.1
258
Normal
-0.1
492
Normal
-0.1
567
Tumor
-0.1
742
Normal
-0.1
394
Normal
-0.2
312
Normal
-0.2
424
Normal
-0.2
478
Normal
-0.2
362
Normal
-0.2
188
Normal
-0.2
376
Normal
-0.2
352
Normal
-0.2
574
Normal
-0.2
881
Tumor
-0.2
278
Normal
-0.2
436
Normal
-0.2
147
Tumor
-0.2
297
Tumor
-0.2
716
Normal
-0.2
882
Normal
-0.2
416
Normal
-0.2
444
Normal
-0.2
211
Tumor
-0.2
698
Normal
-0.2
366
Normal
-0.2
298
Normal
-0.2
671
Tumor
-0.2
231
Tumor
-0.2
924
Normal
-0.2
432
Normal
-0.2
943
Tumor
-0.2
746
Normal
-0.2
878
Normal
-0.3
148
Normal
-0.3
426
Normal
-0.3
818
Normal
-0.3
172
Normal
-0.3
744
Normal
-0.3
364
Normal
-0.3
1046
Normal
-0.3
472
Normal
-0.3
473
Tumor
-0.3
162
Normal
-0.3
272
Normal
-0.4
1021
Tumor
-0.4
186
Normal
-0.4
331
Tumor
-0.4
465
Tumor
-0.4
965
Tumor
-0.4
925
Tumor
-0.6
367
Tumor
-0.6
517
Tumor
-0.6
341
Tumor
-0.6
171
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.