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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EMC9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
26.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
18.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
15.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
571
Tumor
1.6
137
Tumor
1.5
393
Tumor
1.4
685
Tumor
1.3
451
Tumor
1.2
452
Normal
1.0
411
Tumor
1.0
665
Tumor
0.9
466
Normal
0.9
465
Tumor
0.9
557
Tumor
0.9
497
Tumor
0.9
141
Tumor
0.9
456
Normal
0.8
1013
Tumor
0.8
464
Normal
0.8
491
Tumor
0.8
527
Tumor
0.8
1027
Tumor
0.8
647
Tumor
0.8
427
Tumor
0.8
636
Normal
0.8
138
Normal
0.8
112
Tumor
0.7
455
Tumor
0.7
477
Tumor
0.7
171
Tumor
0.7
915
Tumor
0.7
481
Tumor
0.7
721
Tumor
0.7
468
Normal
0.7
695
Tumor
0.7
745
Tumor
0.7
135
Tumor
0.7
147
Tumor
0.7
127
Tumor
0.6
473
Tumor
0.6
428
Normal
0.6
494
Normal
0.6
467
Tumor
0.6
357
Tumor
0.6
213
Tumor
0.6
525
Tumor
0.6
223
Tumor
0.6
136
Normal
0.5
628
Normal
0.5
573
Tumor
0.5
421
Tumor
0.5
627
Tumor
0.5
813
Tumor
0.5
615
Tumor
0.5
953
Tumor
0.5
737
Tumor
0.4
423
Tumor
0.4
142
Normal
0.4
231
Tumor
0.4
414
Normal
0.4
435
Tumor
0.4
277
Tumor
0.4
616
Normal
0.4
342
Normal
0.4
257
Tumor
0.4
483
Tumor
0.4
431
Tumor
0.3
161
Tumor
0.3
641
Tumor
0.3
355
Tumor
0.3
618
Normal
0.3
937
Tumor
0.3
546
Normal
0.3
642
Normal
0.3
125
Tumor
0.3
388
Normal
0.3
482
Normal
0.3
861
Tumor
0.3
463
Tumor
0.3
145
Tumor
0.3
426
Normal
0.3
422
Normal
0.3
283
Tumor
0.2
313
Tumor
0.2
663
Tumor
0.2
258
Normal
0.2
488
Normal
0.2
195
Tumor
0.2
148
Normal
0.2
537
Tumor
0.2
343
Tumor
0.2
227
Tumor
0.2
814
Normal
0.2
344
Normal
0.2
484
Normal
0.2
424
Normal
0.2
221
Tumor
0.2
222
Normal
0.2
132
Normal
0.2
728
Normal
0.2
554
Normal
0.2
218
Normal
0.2
462
Normal
0.2
123
Tumor
0.2
196
Normal
0.1
261
Tumor
0.1
881
Tumor
0.1
923
Tumor
0.1
858
Normal
0.1
865
Tumor
0.1
515
Tumor
0.1
394
Normal
0.1
286
Normal
0.1
186
Normal
0.1
851
Tumor
0.1
672
Normal
0.1
278
Normal
0.1
744
Normal
0.1
185
Tumor
0.1
352
Normal
0.1
191
Tumor
0.1
128
Normal
0.1
738
Normal
0.1
354
Normal
0.1
698
Normal
0.1
955
Tumor
0.1
162
Normal
0.1
358
Normal
0.1
188
Normal
0.1
268
Normal
0.1
172
Normal
0.1
396
Normal
0.1
824
Normal
0.1
478
Normal
0.0
146
Normal
0.0
867
Tumor
0.0
111
Normal
0.0
873
Tumor
0.0
474
Normal
0.0
513
Tumor
0.0
533
Tumor
0.0
696
Normal
0.0
977
Tumor
0.0
356
Normal
0.0
534
Normal
0.0
232
Normal
0.0
217
Tumor
0.0
472
Normal
0.0
392
Normal
0.0
262
Normal
0.0
884
Normal
0.0
445
Tumor
0.0
568
Normal
0.0
648
Normal
0.0
722
Normal
0.0
214
Normal
0.0
716
Normal
0.0
126
Normal
0.0
353
Tumor
0.0
413
Tumor
0.0
212
Normal
0.0
815
Tumor
-0.1
664
Normal
-0.1
883
Tumor
-0.1
662
Normal
-0.1
617
Tumor
-0.1
862
Normal
-0.1
863
Tumor
-0.1
785
Tumor
-0.1
1014
Normal
-0.1
461
Tumor
-0.1
528
Normal
-0.1
786
Normal
-0.1
661
Tumor
-0.1
666
Normal
-0.1
921
Tumor
-0.1
114
Normal
-0.1
816
Normal
-0.1
314
Normal
-0.1
341
Tumor
-0.1
983
Tumor
-0.1
964
Normal
-0.1
332
Normal
-0.1
364
Normal
-0.1
1046
Normal
-0.1
425
Tumor
-0.1
448
Normal
-0.1
271
Tumor
-0.1
572
Normal
-0.1
912
Normal
-0.1
328
Normal
-0.1
714
Normal
-0.1
868
Normal
-0.1
742
Normal
-0.1
187
Tumor
-0.1
864
Normal
-0.2
284
Normal
-0.2
954
Normal
-0.2
498
Normal
-0.2
433
Tumor
-0.2
415
Tumor
-0.2
493
Tumor
-0.2
224
Normal
-0.2
386
Normal
-0.2
523
Tumor
-0.2
982
Normal
-0.2
228
Normal
-0.2
558
Normal
-0.2
635
Tumor
-0.2
686
Normal
-0.2
443
Tumor
-0.2
298
Normal
-0.2
553
Tumor
-0.2
976
Normal
-0.2
852
Normal
-0.2
981
Tumor
-0.2
913
Tumor
-0.2
746
Normal
-0.2
978
Normal
-0.2
327
Tumor
-0.2
412
Normal
-0.2
984
Normal
-0.2
1016
Normal
-0.2
857
Tumor
-0.2
1044
Normal
-0.2
416
Normal
-0.2
387
Tumor
-0.2
124
Normal
-0.2
818
Normal
-0.2
272
Normal
-0.2
866
Normal
-0.2
914
Normal
-0.2
882
Normal
-0.2
957
Tumor
-0.2
926
Normal
-0.2
444
Normal
-0.2
817
Tumor
-0.2
944
Normal
-0.2
192
Normal
-0.3
777
Tumor
-0.3
436
Normal
-0.3
918
Normal
-0.3
471
Tumor
-0.3
446
Normal
-0.3
1045
Tumor
-0.3
312
Normal
-0.3
113
Tumor
-0.3
564
Normal
-0.3
823
Tumor
-0.3
963
Tumor
-0.3
938
Normal
-0.3
487
Tumor
-0.3
514
Normal
-0.3
331
Tumor
-0.3
211
Tumor
-0.3
952
Normal
-0.3
434
Normal
-0.3
925
Tumor
-0.3
713
Tumor
-0.3
526
Normal
-0.3
285
Tumor
-0.3
778
Normal
-0.4
965
Tumor
-0.4
922
Normal
-0.4
878
Normal
-0.4
538
Normal
-0.4
874
Normal
-0.4
1042
Normal
-0.4
968
Normal
-0.4
956
Normal
-0.4
741
Tumor
-0.4
492
Normal
-0.4
958
Normal
-0.4
391
Tumor
-0.4
518
Normal
-0.4
351
Tumor
-0.4
727
Tumor
-0.4
1015
Tumor
-0.4
966
Normal
-0.5
563
Tumor
-0.5
536
Normal
-0.5
432
Normal
-0.5
1043
Tumor
-0.5
924
Normal
-0.5
756
Normal
-0.5
567
Tumor
-0.5
1026
Normal
-0.5
877
Tumor
-0.5
385
Tumor
-0.5
916
Normal
-0.5
524
Normal
-0.6
917
Tumor
-0.6
911
Tumor
-0.6
395
Tumor
-0.6
723
Tumor
-0.6
297
Tumor
-0.6
1028
Normal
-0.6
671
Tumor
-0.6
975
Tumor
-0.6
267
Tumor
-0.6
715
Tumor
-0.6
755
Tumor
-0.6
574
Normal
-0.7
535
Tumor
-0.7
447
Tumor
-0.7
311
Tumor
-0.7
131
Tumor
-0.7
363
Tumor
-0.7
943
Tumor
-0.7
967
Tumor
-0.7
951
Tumor
-0.8
545
Tumor
-0.8
1022
Normal
-0.8
1025
Tumor
-0.9
724
Normal
-0.9
516
Normal
-0.9
1032
Normal
-1.0
517
Tumor
-1.0
1021
Tumor
-1.1
1031
Tumor
-1.2
743
Tumor
-1.3
1041
Tumor
-1.6
697
Tumor
-2.1
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
