We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NFKBIA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
79.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
787.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
297.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
260.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
259.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
250.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
222.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
215.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
214.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
204.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
195.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
183.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
181.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
179.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
178.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
170.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
169.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
163.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
162.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
160.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
159.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
152.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
150.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
149.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
148.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
148.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
147.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
145.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
144.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
143.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
141.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
140.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
139.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
138.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
137.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
137.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
134.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
133.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
131.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
130.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
130.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
127.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
124.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
123.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
122.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
122.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
122.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
121.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
121.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
121.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
117.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
117.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
116.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
115.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
114.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
114.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
113.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
113.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
112.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
111.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
110.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
110.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
109.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
109.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
109.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
108.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
108.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
108.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
107.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
107.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
106.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
105.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
105.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
105.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
104.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
104.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
103.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
103.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
103.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
102.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
102.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
102.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
102.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
102.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
102.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
101.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
101.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
101.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
101.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
101.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
101.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
100.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
99.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
99.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
98.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
98.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
97.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
97.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
97.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
97.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
97.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
96.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
96.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
95.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
95.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
95.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
94.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
94.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
93.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
91.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
91.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
90.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
89.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
88.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
88.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
87.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
87.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
87.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
87.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
87.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
86.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
86.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
85.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
85.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
85.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
84.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
84.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
84.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
84.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
83.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
82.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
82.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
82.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
81.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
81.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
81.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
80.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
80.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
80.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
80.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
80.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
80.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
79.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
79.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
79.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
79.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
79.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
79.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
78.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
78.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
78.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
78.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
78.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
77.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
77.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
77.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
77.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
75.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
75.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
75.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
74.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
74.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
74.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
74.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
74.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
74.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
74.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
74.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
74.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
73.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
73.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
73.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
73.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
72.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
72.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
72.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
72.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
71.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
71.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
71.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
71.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
70.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
70.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
70.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
70.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
69.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
69.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
69.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
69.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
68.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
68.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
68.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
67.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
67.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
67.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
67.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
66.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
66.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
65.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
65.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
65.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
64.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
64.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
64.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
64.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
64.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
64.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
63.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
63.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
63.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
62.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
62.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
62.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
61.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
61.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
61.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
61.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
60.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
60.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
60.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
60.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
59.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
59.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
59.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
58.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
58.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
58.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
58.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
58.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
58.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
57.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
57.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
57.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
57.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
56.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
56.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
56.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
56.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
56.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
56.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
55.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
55.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
55.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
54.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
54.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
54.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
53.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
53.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
53.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
53.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
53.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
53.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
53.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
53.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
53.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
52.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
52.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
52.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
52.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
51.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
51.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
51.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
51.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
50.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
50.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
49.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
49.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
49.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
48.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
48.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
48.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
48.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
47.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
47.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
47.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
46.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
46.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
46.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
46.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
45.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
45.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
45.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
45.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
44.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
44.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
44.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
44.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
44.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
43.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
43.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
43.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
43.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
42.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
42.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
42.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
42.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
42.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
42.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
41.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
41.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
41.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
41.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
41.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
40.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
40.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
40.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
40.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
40.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
39.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
39.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
39.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
38.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
37.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
36.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
36.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
36.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
36.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
35.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
35.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
35.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
35.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
34.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
34.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
33.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
33.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
32.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
31.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
29.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
28.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
27.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
25.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
23.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
23.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NFKBIA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
97.4
Number of samples
231
Samples
Sample
Description
TPM
DO23530
0 years, male, NA, stage:4, dead, 180 days
519.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
434.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
351.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
284.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
279.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
262.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
252.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
234.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
226.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
222.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
207.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
206.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
201.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
194.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
191.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
176.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
175.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
174.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
167.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
167.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
165.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
164.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
163.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
163.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
163.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
160.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
157.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
155.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
154.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
154.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
147.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
146.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
144.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
144.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
143.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
142.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
141.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
140.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
140.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
139.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
139.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
137.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
137.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
133.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
132.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
129.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
127.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
120.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
120.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
119.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
118.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
118.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
117.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
117.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
116.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
116.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
115.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
113.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
111.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
111.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
108.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
108.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
107.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
107.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
106.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
105.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
105.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
104.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
103.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
102.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
102.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
101.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
101.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
101.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
101.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
99.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
98.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
98.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
97.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
97.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
97.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
97.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
97.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
97.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
96.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
96.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
96.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
95.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
95.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
94.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
94.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
94.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
94.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
93.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
93.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
92.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
91.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
91.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
91.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
90.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
90.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
90.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
89.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
88.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
88.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
88.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
87.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
87.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
87.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
86.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
86.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
85.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
85.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
85.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
84.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
84.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
83.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
83.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
83.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
82.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
82.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
81.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
81.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
80.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
80.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
80.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
80.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
80.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
79.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
79.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
79.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
79.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
78.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
78.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
78.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
77.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
76.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
76.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
72.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
71.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
71.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
71.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
70.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
70.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
70.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
69.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
69.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
69.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
69.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
69.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
69.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
69.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
68.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
68.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
67.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
66.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
66.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
66.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
65.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
65.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
65.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
64.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
64.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
64.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
63.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
62.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
62.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
62.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
61.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
61.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
61.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
61.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
59.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
59.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
59.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
58.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
57.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
57.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
57.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
57.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
57.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
56.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
56.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
56.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
56.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
54.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
53.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
53.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
52.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
52.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
51.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
51.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
51.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
51.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
50.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
50.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
50.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
49.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
49.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
49.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
49.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
48.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
46.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
45.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
44.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
44.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
43.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
42.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
42.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
41.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
40.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
39.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
38.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
37.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
36.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
36.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
36.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
36.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
35.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
34.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
34.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
34.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
31.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
29.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
28.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
328
Normal
1.0
727
Tumor
0.9
191
Tumor
0.9
642
Normal
0.8
917
Tumor
0.7
332
Normal
0.7
715
Tumor
0.7
426
Normal
0.6
536
Normal
0.6
222
Normal
0.6
268
Normal
0.6
534
Normal
0.6
428
Normal
0.5
721
Tumor
0.5
618
Normal
0.5
714
Normal
0.5
546
Normal
0.5
314
Normal
0.5
354
Normal
0.5
615
Tumor
0.5
636
Normal
0.5
737
Tumor
0.5
916
Normal
0.5
513
Tumor
0.5
628
Normal
0.5
915
Tumor
0.5
394
Normal
0.4
538
Normal
0.4
516
Normal
0.4
196
Normal
0.4
554
Normal
0.4
192
Normal
0.4
672
Normal
0.4
132
Normal
0.4
414
Normal
0.4
261
Tumor
0.4
364
Normal
0.4
214
Normal
0.4
352
Normal
0.4
424
Normal
0.4
388
Normal
0.4
956
Normal
0.4
136
Normal
0.4
616
Normal
0.4
528
Normal
0.4
938
Normal
0.4
968
Normal
0.4
272
Normal
0.4
342
Normal
0.4
627
Tumor
0.3
926
Normal
0.3
666
Normal
0.3
422
Normal
0.3
146
Normal
0.3
447
Tumor
0.3
924
Normal
0.3
728
Normal
0.3
922
Normal
0.3
723
Tumor
0.3
195
Tumor
0.3
262
Normal
0.3
138
Normal
0.3
358
Normal
0.3
976
Normal
0.3
392
Normal
0.3
344
Normal
0.3
877
Tumor
0.3
744
Normal
0.3
738
Normal
0.3
958
Normal
0.3
867
Tumor
0.3
716
Normal
0.3
145
Tumor
0.3
955
Tumor
0.3
298
Normal
0.3
278
Normal
0.3
954
Normal
0.3
742
Normal
0.3
386
Normal
0.3
866
Normal
0.3
1032
Normal
0.2
396
Normal
0.2
686
Normal
0.2
617
Tumor
0.2
356
Normal
0.2
518
Normal
0.2
142
Normal
0.2
884
Normal
0.2
452
Normal
0.2
756
Normal
0.2
816
Normal
0.2
186
Normal
0.2
813
Tumor
0.2
852
Normal
0.2
515
Tumor
0.2
818
Normal
0.2
1022
Normal
0.2
482
Normal
0.2
312
Normal
0.2
218
Normal
0.2
258
Normal
0.2
746
Normal
0.2
648
Normal
0.2
456
Normal
0.2
664
Normal
0.2
698
Normal
0.2
423
Tumor
0.2
778
Normal
0.2
912
Normal
0.2
696
Normal
0.2
171
Tumor
0.2
814
Normal
0.2
1042
Normal
0.2
662
Normal
0.2
468
Normal
0.2
464
Normal
0.2
665
Tumor
0.2
448
Normal
0.2
161
Tumor
0.2
172
Normal
0.1
432
Normal
0.1
864
Normal
0.1
188
Normal
0.1
868
Normal
0.1
1046
Normal
0.1
824
Normal
0.1
722
Normal
0.1
862
Normal
0.1
1044
Normal
0.1
462
Normal
0.1
918
Normal
0.1
141
Tumor
0.1
311
Tumor
0.1
1028
Normal
0.1
874
Normal
0.1
1026
Normal
0.1
523
Tumor
0.1
412
Normal
0.1
815
Tumor
0.1
526
Normal
0.1
944
Normal
0.1
327
Tumor
0.1
232
Normal
0.1
858
Normal
0.1
914
Normal
0.1
484
Normal
0.1
863
Tumor
0.1
393
Tumor
0.1
964
Normal
0.1
224
Normal
0.1
952
Normal
0.1
421
Tumor
0.1
982
Normal
0.1
162
Normal
0.1
524
Normal
0.1
786
Normal
0.1
185
Tumor
0.1
713
Tumor
0.1
878
Normal
0.1
425
Tumor
0.1
148
Normal
0.1
785
Tumor
0.1
286
Normal
0.0
353
Tumor
0.0
383
Tumor
0.0
427
Tumor
0.0
882
Normal
0.0
415
Tumor
0.0
481
Tumor
0.0
861
Tumor
0.0
217
Tumor
0.0
635
Tumor
0.0
685
Tumor
0.0
416
Normal
0.0
865
Tumor
0.0
267
Tumor
0.0
873
Tumor
0.0
777
Tumor
0.0
483
Tumor
0.0
911
Tumor
0.0
444
Normal
0.0
488
Normal
0.0
413
Tumor
0.0
466
Normal
0.0
953
Tumor
-0.1
285
Tumor
-0.1
187
Tumor
-0.1
1025
Tumor
-0.1
533
Tumor
-0.1
1014
Normal
-0.1
545
Tumor
-0.1
1041
Tumor
-0.1
641
Tumor
-0.1
984
Normal
-0.1
1016
Normal
-0.1
212
Normal
-0.1
446
Normal
-0.1
367
Tumor
-0.1
525
Tumor
-0.1
221
Tumor
-0.1
297
Tumor
-0.1
375
Tumor
-0.1
514
Normal
-0.1
487
Tumor
-0.1
211
Tumor
-0.1
147
Tumor
-0.1
137
Tumor
-0.1
1045
Tumor
-0.1
213
Tumor
-0.1
1013
Tumor
-0.1
341
Tumor
-0.1
461
Tumor
-0.1
451
Tumor
-0.1
228
Normal
-0.1
135
Tumor
-0.2
365
Tumor
-0.2
343
Tumor
-0.2
478
Normal
-0.2
647
Tumor
-0.2
494
Normal
-0.2
966
Normal
-0.2
755
Tumor
-0.2
978
Normal
-0.2
923
Tumor
-0.2
492
Normal
-0.2
436
Normal
-0.2
663
Tumor
-0.2
527
Tumor
-0.2
477
Tumor
-0.2
445
Tumor
-0.2
498
Normal
-0.2
857
Tumor
-0.2
943
Tumor
-0.2
913
Tumor
-0.2
1027
Tumor
-0.3
724
Normal
-0.3
981
Tumor
-0.3
741
Tumor
-0.3
697
Tumor
-0.3
465
Tumor
-0.3
1043
Tumor
-0.3
925
Tumor
-0.3
937
Tumor
-0.3
366
Normal
-0.3
284
Normal
-0.3
977
Tumor
-0.3
661
Tumor
-0.3
391
Tumor
-0.3
851
Tumor
-0.3
472
Normal
-0.3
368
Normal
-0.3
817
Tumor
-0.3
357
Tumor
-0.3
823
Tumor
-0.3
471
Tumor
-0.3
434
Normal
-0.3
376
Normal
-0.3
271
Tumor
-0.3
131
Tumor
-0.4
223
Tumor
-0.4
387
Tumor
-0.4
467
Tumor
-0.4
431
Tumor
-0.4
395
Tumor
-0.4
553
Tumor
-0.4
435
Tumor
-0.4
257
Tumor
-0.4
671
Tumor
-0.4
313
Tumor
-0.4
463
Tumor
-0.4
474
Normal
-0.4
384
Normal
-0.4
951
Tumor
-0.4
362
Normal
-0.4
283
Tumor
-0.4
455
Tumor
-0.4
227
Tumor
-0.4
491
Tumor
-0.5
883
Tumor
-0.5
745
Tumor
-0.5
535
Tumor
-0.5
517
Tumor
-0.5
695
Tumor
-0.5
385
Tumor
-0.5
361
Tumor
-0.5
983
Tumor
-0.5
351
Tumor
-0.5
277
Tumor
-0.5
231
Tumor
-0.5
1031
Tumor
-0.5
493
Tumor
-0.5
1021
Tumor
-0.5
1015
Tumor
-0.5
921
Tumor
-0.6
355
Tumor
-0.6
497
Tumor
-0.6
881
Tumor
-0.6
743
Tumor
-0.6
363
Tumor
-0.6
433
Tumor
-0.7
443
Tumor
-0.7
537
Tumor
-0.8
963
Tumor
-0.8
975
Tumor
-0.8
957
Tumor
-0.8
331
Tumor
-0.9
411
Tumor
-1.0
967
Tumor
-1.0
965
Tumor
-1.0
473
Tumor
-1.0
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
