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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DCAF11 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
125.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
65.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
65.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
56.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
55.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
55.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
54.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
54.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
54.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
53.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
52.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
51.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
50.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
50.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
50.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
49.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
47.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
47.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
46.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
44.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
43.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
43.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
43.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
42.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
42.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
42.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
42.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
41.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
40.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
40.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
40.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
39.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
39.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
39.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
39.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
39.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
38.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
38.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
38.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
38.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
37.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
37.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
37.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
37.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
37.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
36.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
36.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
36.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
35.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
35.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
35.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
35.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
35.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
35.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
35.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
34.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
34.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
34.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
34.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
34.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
33.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
33.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
32.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
32.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
32.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
31.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
31.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
30.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
30.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
29.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
29.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
29.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
28.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
27.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
27.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
27.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
25.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
25.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
24.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
24.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
24.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
24.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
23.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
22.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
21.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
20.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DCAF11 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.8
Number of samples
231
Samples
Sample
Description
TPM
DO45125
0 years, male, NA, stage:3, alive, 1680 days
112.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
105.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
99.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
96.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
95.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
93.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
92.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
85.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
82.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
81.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
80.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
79.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
74.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
73.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
72.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
71.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
71.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
71.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
70.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
69.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
69.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
68.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
67.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
66.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
65.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
65.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
63.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
62.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
61.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
61.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
60.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
60.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
59.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
59.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
58.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
58.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
58.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
57.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
57.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
57.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
57.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
56.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
56.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
56.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
56.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
56.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
55.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
55.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
55.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
54.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
54.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
54.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
53.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
52.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
52.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
50.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
50.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
50.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
49.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
49.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
49.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
48.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
47.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
47.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
47.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
46.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
46.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
46.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
45.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
45.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
45.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
44.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
44.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
44.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
44.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
43.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
43.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
43.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
43.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
43.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
43.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
42.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
42.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
42.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
42.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
42.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
41.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
41.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
41.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
40.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
40.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
39.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
39.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
39.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
39.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
39.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
39.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
38.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
38.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
38.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
37.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
37.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
37.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
37.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
37.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
36.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
36.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
36.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
36.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
35.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
35.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
35.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
35.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
34.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
34.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
34.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
34.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
33.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
32.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
32.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
32.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
32.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
32.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
32.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
32.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
31.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
30.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
30.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
30.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
29.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
29.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
29.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
29.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
28.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
28.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
28.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
26.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
25.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
23.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
22.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
222
Normal
0.9
128
Normal
0.8
196
Normal
0.8
314
Normal
0.7
358
Normal
0.7
1027
Tumor
0.7
636
Normal
0.7
298
Normal
0.7
342
Normal
0.7
445
Tumor
0.7
568
Normal
0.7
698
Normal
0.7
388
Normal
0.7
481
Tumor
0.6
648
Normal
0.6
415
Tumor
0.6
436
Normal
0.6
484
Normal
0.6
278
Normal
0.6
431
Tumor
0.6
1032
Normal
0.6
554
Normal
0.6
862
Normal
0.6
332
Normal
0.6
452
Normal
0.6
742
Normal
0.6
628
Normal
0.6
878
Normal
0.5
572
Normal
0.5
1022
Normal
0.5
148
Normal
0.5
448
Normal
0.5
618
Normal
0.5
357
Tumor
0.5
414
Normal
0.5
186
Normal
0.5
111
Normal
0.5
914
Normal
0.5
462
Normal
0.5
938
Normal
0.5
214
Normal
0.5
426
Normal
0.5
924
Normal
0.5
571
Tumor
0.5
714
Normal
0.5
1046
Normal
0.5
366
Normal
0.5
482
Normal
0.5
112
Tumor
0.5
922
Normal
0.5
744
Normal
0.5
422
Normal
0.5
464
Normal
0.5
723
Tumor
0.5
666
Normal
0.5
162
Normal
0.5
664
Normal
0.5
518
Normal
0.5
412
Normal
0.4
356
Normal
0.4
396
Normal
0.4
746
Normal
0.4
662
Normal
0.4
964
Normal
0.4
466
Normal
0.4
526
Normal
0.4
515
Tumor
0.4
114
Normal
0.4
428
Normal
0.4
432
Normal
0.4
616
Normal
0.4
477
Tumor
0.4
564
Normal
0.4
686
Normal
0.4
642
Normal
0.4
546
Normal
0.4
232
Normal
0.4
738
Normal
0.4
558
Normal
0.4
416
Normal
0.4
394
Normal
0.4
258
Normal
0.4
446
Normal
0.4
272
Normal
0.4
132
Normal
0.4
228
Normal
0.4
955
Tumor
0.4
1026
Normal
0.4
867
Tumor
0.4
1042
Normal
0.4
352
Normal
0.3
516
Normal
0.3
472
Normal
0.3
926
Normal
0.3
172
Normal
0.3
286
Normal
0.3
376
Normal
0.3
716
Normal
0.3
912
Normal
0.3
534
Normal
0.3
741
Tumor
0.3
488
Normal
0.3
824
Normal
0.3
392
Normal
0.3
218
Normal
0.3
487
Tumor
0.3
866
Normal
0.3
1014
Normal
0.3
312
Normal
0.3
227
Tumor
0.3
142
Normal
0.3
864
Normal
0.3
1044
Normal
0.3
944
Normal
0.3
696
Normal
0.3
494
Normal
0.3
424
Normal
0.3
728
Normal
0.3
456
Normal
0.3
786
Normal
0.3
1028
Normal
0.3
918
Normal
0.3
727
Tumor
0.3
884
Normal
0.3
915
Tumor
0.3
756
Normal
0.3
818
Normal
0.3
328
Normal
0.3
468
Normal
0.3
354
Normal
0.3
958
Normal
0.3
911
Tumor
0.2
423
Tumor
0.2
627
Tumor
0.2
882
Normal
0.2
722
Normal
0.2
386
Normal
0.2
344
Normal
0.2
976
Normal
0.2
874
Normal
0.2
858
Normal
0.2
574
Normal
0.2
474
Normal
0.2
816
Normal
0.2
956
Normal
0.2
364
Normal
0.2
124
Normal
0.2
138
Normal
0.2
362
Normal
0.2
368
Normal
0.2
262
Normal
0.2
982
Normal
0.2
136
Normal
0.2
755
Tumor
0.2
868
Normal
0.2
284
Normal
0.2
778
Normal
0.2
212
Normal
0.2
514
Normal
0.1
127
Tumor
0.1
513
Tumor
0.1
1016
Normal
0.1
966
Normal
0.1
135
Tumor
0.1
863
Tumor
0.1
813
Tumor
0.1
923
Tumor
0.1
954
Normal
0.1
615
Tumor
0.1
672
Normal
0.1
777
Tumor
0.1
873
Tumor
0.1
271
Tumor
0.1
224
Normal
0.1
952
Normal
0.1
865
Tumor
0.1
635
Tumor
0.1
146
Normal
0.1
528
Normal
0.1
483
Tumor
0.1
126
Normal
0.1
968
Normal
0.0
852
Normal
0.0
188
Normal
0.0
663
Tumor
0.0
1031
Tumor
0.0
1043
Tumor
0.0
1041
Tumor
0.0
695
Tumor
0.0
365
Tumor
0.0
434
Normal
0.0
538
Normal
0.0
261
Tumor
0.0
268
Normal
0.0
785
Tumor
0.0
277
Tumor
0.0
978
Normal
0.0
1045
Tumor
0.0
161
Tumor
0.0
981
Tumor
-0.1
433
Tumor
-0.1
313
Tumor
-0.1
737
Tumor
-0.1
984
Normal
-0.1
435
Tumor
-0.1
1025
Tumor
-0.1
951
Tumor
-0.1
444
Normal
-0.1
361
Tumor
-0.1
257
Tumor
-0.1
327
Tumor
-0.1
137
Tumor
-0.1
267
Tumor
-0.1
353
Tumor
-0.1
524
Normal
-0.1
916
Normal
-0.1
411
Tumor
-0.2
384
Normal
-0.2
883
Tumor
-0.2
478
Normal
-0.2
861
Tumor
-0.2
492
Normal
-0.2
553
Tumor
-0.2
857
Tumor
-0.2
141
Tumor
-0.2
814
Normal
-0.2
641
Tumor
-0.2
465
Tumor
-0.2
221
Tumor
-0.3
721
Tumor
-0.3
921
Tumor
-0.3
217
Tumor
-0.3
525
Tumor
-0.3
963
Tumor
-0.3
185
Tumor
-0.3
823
Tumor
-0.3
192
Normal
-0.3
355
Tumor
-0.3
536
Normal
-0.3
527
Tumor
-0.3
685
Tumor
-0.3
421
Tumor
-0.3
195
Tumor
-0.3
498
Normal
-0.3
363
Tumor
-0.4
113
Tumor
-0.4
977
Tumor
-0.4
517
Tumor
-0.4
523
Tumor
-0.4
341
Tumor
-0.4
537
Tumor
-0.4
461
Tumor
-0.4
213
Tumor
-0.4
451
Tumor
-0.4
393
Tumor
-0.5
131
Tumor
-0.5
123
Tumor
-0.5
493
Tumor
-0.5
471
Tumor
-0.5
387
Tumor
-0.5
145
Tumor
-0.5
413
Tumor
-0.5
447
Tumor
-0.5
953
Tumor
-0.5
965
Tumor
-0.5
1013
Tumor
-0.5
147
Tumor
-0.6
967
Tumor
-0.6
713
Tumor
-0.6
745
Tumor
-0.6
877
Tumor
-0.6
743
Tumor
-0.6
427
Tumor
-0.6
937
Tumor
-0.6
975
Tumor
-0.6
563
Tumor
-0.6
473
Tumor
-0.6
443
Tumor
-0.6
187
Tumor
-0.7
297
Tumor
-0.7
1021
Tumor
-0.7
1015
Tumor
-0.7
463
Tumor
-0.7
617
Tumor
-0.7
391
Tumor
-0.7
191
Tumor
-0.8
383
Tumor
-0.8
697
Tumor
-0.8
557
Tumor
-0.8
957
Tumor
-0.8
715
Tumor
-0.8
455
Tumor
-0.8
881
Tumor
-0.8
125
Tumor
-0.8
331
Tumor
-0.8
943
Tumor
-0.8
925
Tumor
-0.8
917
Tumor
-0.8
223
Tumor
-0.8
647
Tumor
-0.8
497
Tumor
-0.8
983
Tumor
-0.9
535
Tumor
-0.9
491
Tumor
-0.9
425
Tumor
-0.9
533
Tumor
-0.9
231
Tumor
-0.9
913
Tumor
-0.9
395
Tumor
-1.0
385
Tumor
-1.0
171
Tumor
-1.0
665
Tumor
-1.0
375
Tumor
-1.0
567
Tumor
-1.0
285
Tumor
-1.0
815
Tumor
-1.0
211
Tumor
-1.0
311
Tumor
-1.0
283
Tumor
-1.0
351
Tumor
-1.1
851
Tumor
-1.1
343
Tumor
-1.1
467
Tumor
-1.2
661
Tumor
-1.2
817
Tumor
-1.2
545
Tumor
-1.2
671
Tumor
-1.2
367
Tumor
-1.2
573
Tumor
-1.3
724
Normal
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
