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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRP54 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
79.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
63.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
62.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
57.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
54.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
51.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
50.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
49.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
48.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
47.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
45.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
45.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
44.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
44.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
42.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
42.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
41.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
41.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
40.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
39.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
38.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
37.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
37.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
37.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
37.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
37.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
36.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
36.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
36.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
35.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
35.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
35.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
35.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
34.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
34.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
34.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
34.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
34.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
33.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
33.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
33.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
33.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
32.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
32.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
32.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
32.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
32.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
32.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
32.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
32.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
30.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
30.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
30.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
30.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
29.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
28.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
28.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
28.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
27.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
25.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
25.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
24.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
24.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
23.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
23.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
23.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
21.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRP54 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.9
Number of samples
231
Samples
Sample
Description
TPM
DO23552
0 years, female, NA, stage:1, alive, 810 days
59.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
58.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
54.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
51.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
51.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
51.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
51.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
50.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
47.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
47.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
44.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
43.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
43.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
42.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
42.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
41.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
41.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
40.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
39.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
39.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
38.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
38.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
38.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
38.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
38.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
38.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
37.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
37.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
37.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
37.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
35.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
35.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
35.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
35.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
34.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
34.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
34.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
34.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
33.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
33.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
33.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
32.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
32.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
32.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
32.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
32.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
31.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
31.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
31.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
30.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
30.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
30.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
30.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
29.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
29.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
29.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
29.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
29.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
29.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
28.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
28.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
28.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
27.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
27.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
27.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
27.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
27.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
27.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
26.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
26.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
26.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
25.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
25.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
23.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
527
Tumor
0.9
285
Tumor
0.6
137
Tumor
0.6
745
Tumor
0.6
313
Tumor
0.6
635
Tumor
0.6
1013
Tumor
0.6
724
Normal
0.6
981
Tumor
0.6
523
Tumor
0.5
955
Tumor
0.5
487
Tumor
0.5
865
Tumor
0.5
497
Tumor
0.5
557
Tumor
0.5
223
Tumor
0.5
112
Tumor
0.5
617
Tumor
0.4
937
Tumor
0.4
473
Tumor
0.4
535
Tumor
0.4
755
Tumor
0.4
861
Tumor
0.4
357
Tumor
0.4
697
Tumor
0.3
663
Tumor
0.3
721
Tumor
0.3
455
Tumor
0.3
727
Tumor
0.3
353
Tumor
0.3
1015
Tumor
0.3
863
Tumor
0.3
815
Tumor
0.3
135
Tumor
0.3
983
Tumor
0.3
1045
Tumor
0.2
1026
Normal
0.2
261
Tumor
0.2
913
Tumor
0.2
141
Tumor
0.2
864
Normal
0.2
944
Normal
0.2
1028
Normal
0.2
918
Normal
0.2
553
Tumor
0.2
558
Normal
0.2
445
Tumor
0.2
113
Tumor
0.2
383
Tumor
0.2
267
Tumor
0.2
211
Tumor
0.2
926
Normal
0.2
685
Tumor
0.2
514
Normal
0.2
327
Tumor
0.2
471
Tumor
0.2
554
Normal
0.2
922
Normal
0.2
526
Normal
0.2
924
Normal
0.2
728
Normal
0.2
467
Tumor
0.2
952
Normal
0.2
387
Tumor
0.2
857
Tumor
0.2
923
Tumor
0.2
873
Tumor
0.2
1022
Normal
0.2
696
Normal
0.2
484
Normal
0.2
463
Tumor
0.2
1025
Tumor
0.2
1042
Normal
0.1
524
Normal
0.1
145
Tumor
0.1
494
Normal
0.1
328
Normal
0.1
1044
Normal
0.1
493
Tumor
0.1
368
Normal
0.1
448
Normal
0.1
862
Normal
0.1
474
Normal
0.1
228
Normal
0.1
395
Tumor
0.1
536
Normal
0.1
518
Normal
0.1
416
Normal
0.1
723
Tumor
0.1
966
Normal
0.1
1032
Normal
0.1
477
Tumor
0.1
355
Tumor
0.1
466
Normal
0.1
647
Tumor
0.1
786
Normal
0.1
195
Tumor
0.1
714
Normal
0.1
568
Normal
0.1
884
Normal
0.1
361
Tumor
0.1
452
Normal
0.1
1046
Normal
0.1
925
Tumor
0.1
616
Normal
0.1
978
Normal
0.1
212
Normal
0.1
756
Normal
0.1
956
Normal
0.1
636
Normal
0.1
814
Normal
0.1
481
Tumor
0.1
286
Normal
0.1
516
Normal
0.1
1027
Tumor
0.1
628
Normal
0.1
423
Tumor
0.1
866
Normal
0.1
686
Normal
0.1
1031
Tumor
0.1
738
Normal
0.1
284
Normal
0.1
746
Normal
0.1
1014
Normal
0.1
356
Normal
0.1
868
Normal
0.1
492
Normal
0.1
852
Normal
0.1
365
Tumor
0.1
777
Tumor
0.1
648
Normal
0.1
385
Tumor
0.0
415
Tumor
0.0
515
Tumor
0.0
954
Normal
0.0
572
Normal
0.0
916
Normal
0.0
953
Tumor
0.0
421
Tumor
0.0
722
Normal
0.0
412
Normal
0.0
982
Normal
0.0
257
Tumor
0.0
563
Tumor
0.0
528
Normal
0.0
824
Normal
0.0
938
Normal
0.0
142
Normal
0.0
698
Normal
0.0
778
Normal
0.0
1016
Normal
0.0
943
Tumor
0.0
187
Tumor
0.0
984
Normal
0.0
431
Tumor
0.0
976
Normal
0.0
964
Normal
0.0
914
Normal
0.0
564
Normal
0.0
422
Normal
0.0
533
Tumor
0.0
343
Tumor
0.0
488
Normal
0.0
713
Tumor
0.0
312
Normal
0.0
534
Normal
0.0
661
Tumor
0.0
716
Normal
0.0
217
Tumor
0.0
468
Normal
0.0
742
Normal
0.0
483
Tumor
0.0
546
Normal
0.0
331
Tumor
0.0
472
Normal
0.0
462
Normal
0.0
447
Tumor
0.0
665
Tumor
0.0
666
Normal
0.0
967
Tumor
0.0
125
Tumor
0.0
262
Normal
0.0
128
Normal
0.0
136
Normal
0.0
362
Normal
0.0
968
Normal
0.0
376
Normal
0.0
874
Normal
0.0
571
Tumor
0.0
642
Normal
0.0
816
Normal
0.0
396
Normal
0.0
392
Normal
0.0
258
Normal
0.0
298
Normal
0.0
443
Tumor
0.0
513
Tumor
0.0
1043
Tumor
0.0
858
Normal
0.0
232
Normal
0.0
363
Tumor
0.0
191
Tumor
0.0
662
Normal
0.0
434
Normal
0.0
461
Tumor
0.0
912
Normal
0.0
214
Normal
0.0
882
Normal
0.0
958
Normal
0.0
138
Normal
0.0
664
Normal
-0.1
813
Tumor
-0.1
478
Normal
-0.1
917
Tumor
-0.1
218
Normal
-0.1
132
Normal
-0.1
413
Tumor
-0.1
283
Tumor
-0.1
436
Normal
-0.1
823
Tumor
-0.1
221
Tumor
-0.1
278
Normal
-0.1
574
Normal
-0.1
411
Tumor
-0.1
427
Tumor
-0.1
277
Tumor
-0.1
314
Normal
-0.1
127
Tumor
-0.1
785
Tumor
-0.1
538
Normal
-0.1
818
Normal
-0.1
426
Normal
-0.1
878
Normal
-0.1
126
Normal
-0.1
366
Normal
-0.1
364
Normal
-0.1
446
Normal
-0.1
424
Normal
-0.1
498
Normal
-0.1
386
Normal
-0.1
311
Tumor
-0.1
394
Normal
-0.1
414
Normal
-0.1
618
Normal
-0.1
272
Normal
-0.1
741
Tumor
-0.1
881
Tumor
-0.1
114
Normal
-0.1
172
Normal
-0.1
464
Normal
-0.1
388
Normal
-0.1
977
Tumor
-0.1
352
Normal
-0.1
332
Normal
-0.1
224
Normal
-0.1
482
Normal
-0.1
963
Tumor
-0.1
111
Normal
-0.1
915
Tumor
-0.1
344
Normal
-0.1
428
Normal
-0.1
268
Normal
-0.1
391
Tumor
-0.2
213
Tumor
-0.2
456
Normal
-0.2
147
Tumor
-0.2
1041
Tumor
-0.2
196
Normal
-0.2
188
Normal
-0.2
851
Tumor
-0.2
222
Normal
-0.2
148
Normal
-0.2
131
Tumor
-0.2
444
Normal
-0.2
567
Tumor
-0.2
432
Normal
-0.2
573
Tumor
-0.2
627
Tumor
-0.2
393
Tumor
-0.2
435
Tumor
-0.2
351
Tumor
-0.2
975
Tumor
-0.2
883
Tumor
-0.2
672
Normal
-0.2
433
Tumor
-0.2
384
Normal
-0.2
867
Tumor
-0.2
367
Tumor
-0.2
491
Tumor
-0.2
297
Tumor
-0.2
641
Tumor
-0.2
271
Tumor
-0.2
817
Tumor
-0.2
162
Normal
-0.2
465
Tumor
-0.3
192
Normal
-0.3
124
Normal
-0.3
146
Normal
-0.3
185
Tumor
-0.3
737
Tumor
-0.3
1021
Tumor
-0.3
965
Tumor
-0.3
695
Tumor
-0.3
615
Tumor
-0.3
744
Normal
-0.3
671
Tumor
-0.3
186
Normal
-0.3
545
Tumor
-0.3
358
Normal
-0.3
537
Tumor
-0.3
354
Normal
-0.3
342
Normal
-0.4
171
Tumor
-0.4
375
Tumor
-0.4
715
Tumor
-0.4
231
Tumor
-0.4
161
Tumor
-0.4
957
Tumor
-0.4
341
Tumor
-0.4
951
Tumor
-0.4
921
Tumor
-0.5
525
Tumor
-0.5
451
Tumor
-0.5
911
Tumor
-0.5
227
Tumor
-0.5
425
Tumor
-0.6
877
Tumor
-0.7
517
Tumor
-0.7
743
Tumor
-0.8
123
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
