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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TELO2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TELO2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.1
Number of samples
231
Samples
Sample
Description
TPM
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
391
Tumor
1.0
351
Tumor
0.9
1013
Tumor
0.8
211
Tumor
0.8
497
Tumor
0.8
663
Tumor
0.7
865
Tumor
0.7
724
Normal
0.7
367
Tumor
0.6
1021
Tumor
0.6
951
Tumor
0.6
463
Tumor
0.5
877
Tumor
0.5
383
Tumor
0.5
331
Tumor
0.5
395
Tumor
0.5
231
Tumor
0.5
123
Tumor
0.5
533
Tumor
0.5
375
Tumor
0.5
465
Tumor
0.5
535
Tumor
0.5
671
Tumor
0.4
527
Tumor
0.4
925
Tumor
0.4
267
Tumor
0.4
741
Tumor
0.4
537
Tumor
0.4
571
Tumor
0.4
567
Tumor
0.4
665
Tumor
0.4
727
Tumor
0.4
113
Tumor
0.4
283
Tumor
0.4
393
Tumor
0.4
627
Tumor
0.4
161
Tumor
0.4
743
Tumor
0.4
361
Tumor
0.4
191
Tumor
0.4
715
Tumor
0.4
427
Tumor
0.4
647
Tumor
0.4
187
Tumor
0.3
685
Tumor
0.3
147
Tumor
0.3
433
Tumor
0.3
277
Tumor
0.3
387
Tumor
0.3
413
Tumor
0.3
661
Tumor
0.3
353
Tumor
0.3
223
Tumor
0.3
451
Tumor
0.3
357
Tumor
0.3
112
Tumor
0.3
127
Tumor
0.3
222
Normal
0.3
171
Tumor
0.3
285
Tumor
0.3
195
Tumor
0.3
965
Tumor
0.3
385
Tumor
0.2
517
Tumor
0.2
545
Tumor
0.2
257
Tumor
0.2
913
Tumor
0.2
723
Tumor
0.2
196
Normal
0.2
217
Tumor
0.2
635
Tumor
0.2
615
Tumor
0.2
813
Tumor
0.2
815
Tumor
0.2
425
Tumor
0.2
221
Tumor
0.2
487
Tumor
0.2
467
Tumor
0.2
411
Tumor
0.2
648
Normal
0.2
214
Normal
0.2
1015
Tumor
0.2
977
Tumor
0.2
473
Tumor
0.2
313
Tumor
0.2
421
Tumor
0.2
125
Tumor
0.2
435
Tumor
0.2
814
Normal
0.2
642
Normal
0.2
573
Tumor
0.2
672
Normal
0.2
851
Tumor
0.1
777
Tumor
0.1
431
Tumor
0.1
341
Tumor
0.1
185
Tumor
0.1
513
Tumor
0.1
491
Tumor
0.1
664
Normal
0.1
141
Tumor
0.1
937
Tumor
0.1
388
Normal
0.1
523
Tumor
0.1
953
Tumor
0.1
563
Tumor
0.1
557
Tumor
0.1
358
Normal
0.1
213
Tumor
0.1
386
Normal
0.1
423
Tumor
0.1
983
Tumor
0.1
188
Normal
0.1
445
Tumor
0.1
697
Tumor
0.1
1027
Tumor
0.1
662
Normal
0.1
128
Normal
0.1
981
Tumor
0.1
666
Normal
0.1
957
Tumor
0.1
396
Normal
0.1
131
Tumor
0.1
525
Tumor
0.1
641
Tumor
0.1
278
Normal
0.1
915
Tumor
0.1
111
Normal
0.1
365
Tumor
0.1
148
Normal
0.0
515
Tumor
0.0
857
Tumor
0.0
443
Tumor
0.0
618
Normal
0.0
617
Tumor
0.0
297
Tumor
0.0
883
Tumor
0.0
861
Tumor
0.0
192
Normal
0.0
636
Normal
0.0
923
Tumor
0.0
1045
Tumor
0.0
145
Tumor
0.0
218
Normal
0.0
394
Normal
0.0
162
Normal
0.0
355
Tumor
0.0
272
Normal
0.0
392
Normal
0.0
363
Tumor
0.0
262
Normal
0.0
728
Normal
0.0
186
Normal
0.0
452
Normal
0.0
917
Tumor
0.0
258
Normal
0.0
628
Normal
0.0
493
Tumor
0.0
368
Normal
0.0
343
Tumor
0.0
137
Tumor
0.0
456
Normal
0.0
616
Normal
0.0
867
Tumor
0.0
271
Tumor
0.0
943
Tumor
0.0
376
Normal
0.0
881
Tumor
0.0
142
Normal
0.0
138
Normal
0.0
468
Normal
0.0
695
Tumor
-0.1
342
Normal
-0.1
873
Tumor
-0.1
755
Tumor
-0.1
446
Normal
-0.1
447
Tumor
-0.1
366
Normal
-0.1
1043
Tumor
-0.1
528
Normal
-0.1
483
Tumor
-0.1
232
Normal
-0.1
384
Normal
-0.1
352
Normal
-0.1
114
Normal
-0.1
911
Tumor
-0.1
311
Tumor
-0.1
863
Tumor
-0.1
964
Normal
-0.1
268
Normal
-0.1
742
Normal
-0.1
227
Tumor
-0.1
126
Normal
-0.1
546
Normal
-0.1
362
Normal
-0.1
432
Normal
-0.1
172
Normal
-0.1
874
Normal
-0.1
436
Normal
-0.1
464
Normal
-0.1
564
Normal
-0.1
574
Normal
-0.1
124
Normal
-0.1
477
Tumor
-0.1
261
Tumor
-0.1
444
Normal
-0.1
534
Normal
-0.1
136
Normal
-0.1
518
Normal
-0.1
738
Normal
-0.1
332
Normal
-0.1
298
Normal
-0.1
955
Tumor
-0.2
415
Tumor
-0.2
921
Tumor
-0.2
745
Tumor
-0.2
488
Normal
-0.2
737
Tumor
-0.2
228
Normal
-0.2
713
Tumor
-0.2
864
Normal
-0.2
356
Normal
-0.2
954
Normal
-0.2
568
Normal
-0.2
976
Normal
-0.2
466
Normal
-0.2
1041
Tumor
-0.2
455
Tumor
-0.2
956
Normal
-0.2
1028
Normal
-0.2
135
Tumor
-0.2
1031
Tumor
-0.2
224
Normal
-0.2
344
Normal
-0.2
944
Normal
-0.2
448
Normal
-0.2
554
Normal
-0.2
132
Normal
-0.2
816
Normal
-0.2
146
Normal
-0.2
698
Normal
-0.2
984
Normal
-0.2
1016
Normal
-0.2
866
Normal
-0.2
286
Normal
-0.2
967
Tumor
-0.2
558
Normal
-0.2
938
Normal
-0.2
354
Normal
-0.2
498
Normal
-0.2
428
Normal
-0.2
484
Normal
-0.2
862
Normal
-0.2
823
Tumor
-0.2
284
Normal
-0.3
744
Normal
-0.3
526
Normal
-0.3
963
Tumor
-0.3
975
Tumor
-0.3
314
Normal
-0.3
982
Normal
-0.3
1044
Normal
-0.3
716
Normal
-0.3
494
Normal
-0.3
538
Normal
-0.3
952
Normal
-0.3
818
Normal
-0.3
434
Normal
-0.3
422
Normal
-0.3
722
Normal
-0.3
852
Normal
-0.3
536
Normal
-0.3
416
Normal
-0.3
461
Tumor
-0.3
1014
Normal
-0.3
968
Normal
-0.3
492
Normal
-0.3
481
Tumor
-0.3
824
Normal
-0.3
1025
Tumor
-0.3
572
Normal
-0.3
1032
Normal
-0.3
914
Normal
-0.3
328
Normal
-0.3
553
Tumor
-0.3
858
Normal
-0.3
978
Normal
-0.3
364
Normal
-0.3
1046
Normal
-0.3
212
Normal
-0.4
958
Normal
-0.4
868
Normal
-0.4
926
Normal
-0.4
916
Normal
-0.4
696
Normal
-0.4
426
Normal
-0.4
414
Normal
-0.4
1022
Normal
-0.4
721
Tumor
-0.4
882
Normal
-0.4
924
Normal
-0.4
312
Normal
-0.4
966
Normal
-0.4
412
Normal
-0.4
1026
Normal
-0.4
524
Normal
-0.4
714
Normal
-0.4
516
Normal
-0.4
878
Normal
-0.4
514
Normal
-0.4
471
Tumor
-0.5
686
Normal
-0.5
1042
Normal
-0.5
922
Normal
-0.5
424
Normal
-0.5
817
Tumor
-0.5
478
Normal
-0.5
918
Normal
-0.5
474
Normal
-0.5
786
Normal
-0.5
756
Normal
-0.5
472
Normal
-0.5
785
Tumor
-0.6
746
Normal
-0.6
884
Normal
-0.6
778
Normal
-0.6
462
Normal
-0.6
482
Normal
-0.6
327
Tumor
-0.7
912
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
