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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ERH is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
97.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
420.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
257.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
255.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
250.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
235.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
225.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
218.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
214.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
204.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
187.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
186.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
184.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
183.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
180.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
177.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
175.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
174.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
173.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
173.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
172.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
171.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
168.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
167.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
166.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
161.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
158.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
157.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
154.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
154.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
153.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
152.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
150.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
149.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
148.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
146.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
146.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
145.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
144.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
144.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
143.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
143.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
143.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
141.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
141.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
140.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
138.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
138.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
138.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
135.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
135.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
135.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
134.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
134.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
134.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
134.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
134.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
133.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
132.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
131.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
130.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
130.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
130.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
129.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
128.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
128.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
126.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
126.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
125.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
125.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
125.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
125.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
125.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
124.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
123.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
123.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
123.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
123.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
123.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
123.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
122.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
122.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
121.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
121.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
121.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
120.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
119.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
119.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
119.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
118.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
118.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
117.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
117.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
117.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
117.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
117.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
116.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
115.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
114.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
114.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
114.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
113.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
113.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
112.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
112.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
111.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
111.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
110.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
110.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
110.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
110.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
109.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
109.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
109.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
109.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
109.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
108.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
108.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
107.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
107.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
107.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
107.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
106.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
106.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
106.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
106.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
105.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
104.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
104.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
104.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
104.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
103.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
103.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
102.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
102.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
102.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
102.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
102.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
101.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
101.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
100.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
100.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
100.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
100.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
100.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
99.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
99.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
99.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
98.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
98.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
98.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
97.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
97.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
97.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
97.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
97.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
97.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
97.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
96.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
96.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
96.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
96.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
95.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
95.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
95.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
95.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
95.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
95.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
95.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
95.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
94.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
94.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
94.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
93.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
93.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
93.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
93.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
92.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
92.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
92.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
92.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
92.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
92.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
92.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
91.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
91.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
91.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
90.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
90.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
90.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
90.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
89.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
89.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
88.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
88.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
88.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
88.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
87.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
87.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
86.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
86.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
86.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
86.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
86.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
85.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
85.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
85.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
85.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
85.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
85.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
84.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
84.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
84.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
84.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
84.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
84.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
84.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
83.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
83.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
83.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
83.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
82.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
82.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
82.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
82.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
82.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
81.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
81.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
81.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
81.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
81.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
80.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
80.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
80.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
80.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
80.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
79.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
79.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
79.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
79.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
79.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
78.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
78.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
78.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
78.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
77.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
77.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
77.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
77.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
76.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
76.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
76.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
76.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
75.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
75.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
75.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
74.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
74.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
74.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
74.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
74.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
73.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
73.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
73.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
73.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
73.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
72.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
72.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
72.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
72.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
72.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
71.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
71.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
71.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
71.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
71.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
71.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
70.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
70.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
69.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
69.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
69.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
68.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
68.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
68.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
68.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
67.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
67.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
66.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
66.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
66.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
65.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
65.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
65.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
65.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
64.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
64.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
63.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
63.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
63.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
63.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
63.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
63.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
62.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
61.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
61.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
61.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
61.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
61.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
60.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
60.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
60.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
60.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
60.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
60.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
59.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
58.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
58.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
57.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
56.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
56.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
55.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
55.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
55.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
55.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
55.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
54.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
54.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
54.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
53.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
53.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
52.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
52.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
52.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
52.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
52.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
51.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
51.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
51.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
50.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
50.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
49.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
49.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
49.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
46.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
43.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
40.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
36.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
36.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
36.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
34.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
32.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
31.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
28.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
25.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
24.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
21.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ERH is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
96.9
Number of samples
231
Samples
Sample
Description
TPM
DO23526
0 years, male, NA, stage:3, alive, 1050 days
258.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
254.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
205.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
200.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
192.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
188.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
184.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
183.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
182.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
172.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
172.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
172.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
170.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
168.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
167.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
166.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
164.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
152.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
147.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
147.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
145.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
145.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
144.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
142.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
142.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
142.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
140.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
139.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
138.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
138.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
136.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
133.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
132.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
131.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
130.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
129.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
128.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
127.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
126.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
125.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
124.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
123.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
123.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
122.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
120.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
120.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
117.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
117.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
117.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
116.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
115.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
115.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
113.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
113.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
113.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
112.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
112.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
112.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
112.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
111.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
111.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
111.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
108.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
108.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
107.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
107.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
107.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
107.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
107.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
106.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
105.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
105.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
104.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
104.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
104.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
104.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
103.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
103.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
103.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
103.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
102.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
102.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
102.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
102.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
101.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
101.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
100.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
100.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
100.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
100.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
100.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
98.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
98.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
98.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
98.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
98.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
97.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
97.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
96.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
95.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
94.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
93.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
93.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
93.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
93.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
92.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
91.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
91.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
90.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
90.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
90.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
89.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
89.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
88.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
88.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
87.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
87.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
87.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
86.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
86.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
86.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
86.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
85.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
85.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
85.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
85.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
84.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
84.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
84.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
84.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
83.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
83.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
83.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
83.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
82.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
82.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
82.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
82.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
82.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
82.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
82.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
81.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
81.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
81.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
80.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
80.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
80.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
80.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
79.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
79.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
79.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
79.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
79.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
79.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
78.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
77.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
77.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
77.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
77.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
76.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
76.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
75.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
75.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
75.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
74.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
74.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
74.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
74.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
73.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
73.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
73.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
72.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
72.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
72.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
72.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
72.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
72.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
72.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
70.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
70.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
70.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
69.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
69.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
69.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
69.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
68.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
68.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
68.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
68.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
67.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
67.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
66.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
66.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
66.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
65.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
65.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
65.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
64.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
64.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
63.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
63.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
62.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
62.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
62.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
62.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
61.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
61.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
61.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
60.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
60.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
58.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
58.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
57.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
57.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
55.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
55.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
54.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
53.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
53.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
53.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
51.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
51.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
50.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
48.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
48.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
47.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
44.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
42.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
34.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
34.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.1
131
Tumor
1.0
865
Tumor
1.0
497
Tumor
1.0
355
Tumor
1.0
661
Tumor
0.9
965
Tumor
0.9
977
Tumor
0.8
817
Tumor
0.8
861
Tumor
0.7
921
Tumor
0.7
1021
Tumor
0.7
411
Tumor
0.7
957
Tumor
0.7
983
Tumor
0.7
727
Tumor
0.7
487
Tumor
0.7
1031
Tumor
0.7
523
Tumor
0.7
695
Tumor
0.7
951
Tumor
0.7
743
Tumor
0.7
967
Tumor
0.6
937
Tumor
0.6
517
Tumor
0.6
471
Tumor
0.6
493
Tumor
0.6
1013
Tumor
0.6
477
Tumor
0.6
923
Tumor
0.6
975
Tumor
0.5
211
Tumor
0.5
427
Tumor
0.5
785
Tumor
0.5
777
Tumor
0.5
425
Tumor
0.5
685
Tumor
0.5
881
Tumor
0.5
533
Tumor
0.5
363
Tumor
0.5
1015
Tumor
0.5
413
Tumor
0.5
917
Tumor
0.5
491
Tumor
0.5
535
Tumor
0.5
877
Tumor
0.5
883
Tumor
0.5
461
Tumor
0.5
943
Tumor
0.5
863
Tumor
0.4
1025
Tumor
0.4
515
Tumor
0.4
527
Tumor
0.4
483
Tumor
0.4
571
Tumor
0.4
537
Tumor
0.4
285
Tumor
0.4
545
Tumor
0.4
311
Tumor
0.4
815
Tumor
0.4
367
Tumor
0.4
553
Tumor
0.4
431
Tumor
0.4
447
Tumor
0.4
715
Tumor
0.4
755
Tumor
0.4
313
Tumor
0.4
823
Tumor
0.4
953
Tumor
0.4
984
Normal
0.3
557
Tumor
0.3
492
Normal
0.3
963
Tumor
0.3
513
Tumor
0.3
647
Tumor
0.3
913
Tumor
0.3
663
Tumor
0.3
1041
Tumor
0.3
385
Tumor
0.3
331
Tumor
0.3
925
Tumor
0.3
867
Tumor
0.3
161
Tumor
0.3
443
Tumor
0.3
981
Tumor
0.3
697
Tumor
0.3
455
Tumor
0.3
955
Tumor
0.3
357
Tumor
0.3
524
Normal
0.3
227
Tumor
0.2
737
Tumor
0.2
277
Tumor
0.2
915
Tumor
0.2
351
Tumor
0.2
635
Tumor
0.2
724
Normal
0.2
525
Tumor
0.2
135
Tumor
0.2
873
Tumor
0.2
911
Tumor
0.2
866
Normal
0.2
671
Tumor
0.2
756
Normal
0.2
297
Tumor
0.2
1043
Tumor
0.2
1045
Tumor
0.2
617
Tumor
0.2
563
Tumor
0.2
112
Tumor
0.2
498
Normal
0.2
271
Tumor
0.2
982
Normal
0.2
916
Normal
0.2
516
Normal
0.1
423
Tumor
0.1
514
Normal
0.1
283
Tumor
0.1
926
Normal
0.1
978
Normal
0.1
952
Normal
0.1
221
Tumor
0.1
966
Normal
0.1
878
Normal
0.1
741
Tumor
0.1
922
Normal
0.1
882
Normal
0.1
567
Tumor
0.1
745
Tumor
0.1
924
Normal
0.1
538
Normal
0.1
884
Normal
0.1
341
Tumor
0.1
261
Tumor
0.1
536
Normal
0.1
478
Normal
0.1
421
Tumor
0.1
813
Tumor
0.1
1014
Normal
0.1
824
Normal
0.1
518
Normal
0.1
857
Tumor
0.1
554
Normal
0.1
1016
Normal
0.1
918
Normal
0.1
814
Normal
0.0
141
Tumor
0.0
746
Normal
0.0
142
Normal
0.0
721
Tumor
0.0
1027
Tumor
0.0
786
Normal
0.0
851
Tumor
0.0
463
Tumor
0.0
818
Normal
0.0
912
Normal
0.0
662
Normal
0.0
526
Normal
0.0
213
Tumor
0.0
1044
Normal
0.0
383
Tumor
0.0
123
Tumor
0.0
185
Tumor
0.0
433
Tumor
0.0
778
Normal
0.0
665
Tumor
0.0
284
Normal
0.0
573
Tumor
0.0
615
Tumor
0.0
448
Normal
0.0
267
Tumor
0.0
395
Tumor
0.0
445
Tumor
0.0
738
Normal
0.0
723
Tumor
0.0
387
Tumor
0.0
375
Tumor
-0.1
125
Tumor
-0.1
137
Tumor
-0.1
343
Tumor
-0.1
672
Normal
-0.1
412
Normal
-0.1
127
Tumor
-0.1
1032
Normal
-0.1
356
Normal
-0.1
1028
Normal
-0.1
958
Normal
-0.1
636
Normal
-0.1
231
Tumor
-0.1
558
Normal
-0.1
641
Tumor
-0.1
212
Normal
-0.1
858
Normal
-0.1
728
Normal
-0.1
474
Normal
-0.1
698
Normal
-0.1
146
Normal
-0.1
956
Normal
-0.1
393
Tumor
-0.1
686
Normal
-0.1
852
Normal
-0.1
224
Normal
-0.1
415
Tumor
-0.1
113
Tumor
-0.1
964
Normal
-0.1
327
Tumor
-0.1
472
Normal
-0.1
488
Normal
-0.1
494
Normal
-0.1
968
Normal
-0.1
171
Tumor
-0.1
428
Normal
-0.1
147
Tumor
-0.1
546
Normal
-0.2
187
Tumor
-0.2
484
Normal
-0.2
713
Tumor
-0.2
572
Normal
-0.2
954
Normal
-0.2
714
Normal
-0.2
1026
Normal
-0.2
195
Tumor
-0.2
465
Tumor
-0.2
217
Tumor
-0.2
481
Tumor
-0.2
223
Tumor
-0.2
268
Normal
-0.2
664
Normal
-0.2
257
Tumor
-0.2
696
Normal
-0.2
126
Normal
-0.2
874
Normal
-0.2
298
Normal
-0.2
451
Tumor
-0.2
1046
Normal
-0.2
364
Normal
-0.2
192
Normal
-0.2
394
Normal
-0.2
434
Normal
-0.2
528
Normal
-0.2
744
Normal
-0.2
816
Normal
-0.2
716
Normal
-0.2
376
Normal
-0.2
435
Tumor
-0.2
312
Normal
-0.2
666
Normal
-0.2
388
Normal
-0.2
742
Normal
-0.2
938
Normal
-0.2
368
Normal
-0.2
262
Normal
-0.2
191
Tumor
-0.2
422
Normal
-0.2
534
Normal
-0.3
462
Normal
-0.3
482
Normal
-0.3
391
Tumor
-0.3
365
Tumor
-0.3
618
Normal
-0.3
384
Normal
-0.3
944
Normal
-0.3
332
Normal
-0.3
568
Normal
-0.3
114
Normal
-0.3
444
Normal
-0.3
648
Normal
-0.3
136
Normal
-0.3
188
Normal
-0.3
124
Normal
-0.3
232
Normal
-0.3
286
Normal
-0.3
574
Normal
-0.3
128
Normal
-0.3
426
Normal
-0.3
148
Normal
-0.3
162
Normal
-0.3
111
Normal
-0.3
424
Normal
-0.3
228
Normal
-0.3
362
Normal
-0.3
976
Normal
-0.3
564
Normal
-0.3
628
Normal
-0.3
627
Tumor
-0.3
272
Normal
-0.4
328
Normal
-0.4
218
Normal
-0.4
1022
Normal
-0.4
196
Normal
-0.4
436
Normal
-0.4
467
Tumor
-0.4
446
Normal
-0.4
366
Normal
-0.4
138
Normal
-0.4
278
Normal
-0.4
145
Tumor
-0.4
396
Normal
-0.4
432
Normal
-0.4
214
Normal
-0.4
456
Normal
-0.4
186
Normal
-0.4
344
Normal
-0.4
314
Normal
-0.4
416
Normal
-0.4
258
Normal
-0.4
1042
Normal
-0.5
914
Normal
-0.5
361
Tumor
-0.5
616
Normal
-0.5
722
Normal
-0.5
386
Normal
-0.5
172
Normal
-0.5
452
Normal
-0.5
132
Normal
-0.5
642
Normal
-0.6
352
Normal
-0.6
392
Normal
-0.6
868
Normal
-0.6
342
Normal
-0.6
466
Normal
-0.6
222
Normal
-0.6
864
Normal
-0.6
353
Tumor
-0.6
464
Normal
-0.7
862
Normal
-0.7
358
Normal
-0.7
468
Normal
-0.7
414
Normal
-0.8
354
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
