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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMA3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
91.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
231.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
223.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
210.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
205.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
196.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
194.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
191.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
183.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
183.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
180.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
178.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
165.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
156.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
156.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
156.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
153.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
151.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
149.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
148.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
146.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
145.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
144.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
143.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
141.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
140.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
137.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
137.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
137.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
135.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
135.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
135.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
135.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
135.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
135.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
134.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
133.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
132.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
132.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
130.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
129.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
129.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
129.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
128.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
128.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
127.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
126.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
125.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
125.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
125.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
122.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
122.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
121.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
120.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
120.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
120.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
120.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
119.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
119.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
118.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
118.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
118.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
117.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
117.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
117.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
116.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
116.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
116.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
115.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
115.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
114.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
114.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
113.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
113.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
113.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
112.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
112.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
112.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
111.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
111.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
110.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
110.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
110.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
110.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
110.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
109.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
109.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
109.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
108.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
108.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
108.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
107.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
107.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
107.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
107.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
107.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
107.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
107.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
106.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
106.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
105.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
105.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
105.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
105.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
105.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
104.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
104.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
104.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
103.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
103.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
103.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
102.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
102.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
102.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
101.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
101.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
101.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
101.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
101.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
100.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
100.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
99.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
99.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
99.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
99.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
98.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
98.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
98.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
98.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
96.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
96.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
96.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
96.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
96.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
96.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
95.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
95.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
95.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
94.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
94.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
93.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
93.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
93.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
93.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
92.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
92.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
92.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
91.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
91.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
91.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
91.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
91.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
91.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
91.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
91.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
91.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
91.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
90.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
90.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
90.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
89.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
88.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
88.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
88.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
88.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
88.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
88.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
87.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
87.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
87.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
87.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
87.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
86.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
86.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
86.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
86.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
86.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
86.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
85.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
85.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
85.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
85.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
85.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
85.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
84.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
84.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
84.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
84.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
84.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
84.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
83.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
83.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
83.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
83.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
83.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
83.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
83.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
83.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
82.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
82.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
82.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
82.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
82.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
80.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
80.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
80.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
80.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
80.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
80.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
79.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
79.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
79.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
79.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
79.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
78.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
78.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
78.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
78.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
77.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
77.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
77.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
77.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
77.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
77.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
77.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
77.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
77.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
77.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
77.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
76.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
76.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
76.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
76.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
76.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
76.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
75.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
75.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
75.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
75.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
75.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
74.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
74.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
74.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
74.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
74.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
74.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
73.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
73.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
73.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
73.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
72.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
72.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
72.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
72.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
71.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
71.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
71.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
71.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
70.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
70.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
70.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
70.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
70.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
70.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
69.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
69.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
69.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
69.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
69.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
69.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
69.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
68.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
68.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
68.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
68.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
68.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
68.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
68.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
68.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
68.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
68.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
68.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
68.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
68.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
67.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
67.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
67.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
67.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
67.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
67.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
67.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
66.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
66.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
65.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
65.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
65.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
65.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
65.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
65.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
64.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
64.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
64.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
64.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
63.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
63.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
63.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
63.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
63.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
63.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
62.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
62.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
62.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
62.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
62.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
62.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
62.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
61.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
61.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
61.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
60.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
59.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
59.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
59.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
59.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
59.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
59.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
59.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
58.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
58.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
58.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
58.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
57.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
57.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
57.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
56.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
55.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
55.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
55.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
55.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
54.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
54.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
53.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
53.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
52.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
51.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
51.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
50.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
50.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
48.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
48.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
48.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
47.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
45.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
45.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
43.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
41.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
40.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
40.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
39.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
33.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMA3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
85.7
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
193.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
181.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
168.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
165.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
165.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
162.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
161.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
153.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
148.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
146.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
145.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
142.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
140.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
140.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
136.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
133.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
132.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
129.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
126.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
126.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
123.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
123.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
123.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
121.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
120.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
120.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
118.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
118.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
116.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
116.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
115.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
114.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
114.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
113.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
111.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
110.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
110.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
110.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
110.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
109.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
107.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
107.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
107.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
106.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
105.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
104.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
104.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
103.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
103.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
103.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
102.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
102.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
102.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
101.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
101.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
101.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
100.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
100.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
99.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
98.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
98.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
97.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
97.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
96.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
96.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
95.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
95.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
95.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
95.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
95.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
95.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
95.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
94.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
94.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
94.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
93.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
92.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
92.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
92.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
92.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
91.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
91.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
90.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
89.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
89.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
89.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
89.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
89.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
88.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
88.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
87.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
87.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
87.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
87.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
87.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
86.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
86.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
86.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
86.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
85.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
85.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
85.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
85.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
84.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
84.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
84.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
84.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
84.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
83.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
83.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
83.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
82.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
82.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
82.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
82.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
82.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
81.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
81.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
81.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
81.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
81.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
81.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
80.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
80.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
79.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
79.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
78.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
78.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
78.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
78.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
78.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
78.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
78.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
77.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
77.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
76.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
76.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
76.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
76.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
75.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
75.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
75.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
74.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
74.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
74.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
74.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
74.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
74.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
74.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
74.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
73.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
73.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
73.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
72.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
72.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
72.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
72.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
71.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
71.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
71.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
71.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
70.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
69.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
69.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
69.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
69.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
68.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
68.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
68.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
68.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
68.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
68.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
68.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
67.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
67.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
67.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
66.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
66.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
65.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
65.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
65.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
64.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
63.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
63.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
63.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
62.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
62.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
62.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
61.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
61.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
61.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
60.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
60.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
60.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
57.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
57.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
57.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
56.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
55.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
55.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
55.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
55.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
55.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
54.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
53.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
53.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
53.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
53.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
52.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
52.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
52.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
52.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
52.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
51.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
51.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
51.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
51.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
49.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
49.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
48.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
45.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
44.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
43.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
39.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
38.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
36.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
33.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
32.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
29.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
513
Tumor
0.7
777
Tumor
0.6
1022
Normal
0.6
1026
Normal
0.5
484
Normal
0.5
964
Normal
0.5
514
Normal
0.5
824
Normal
0.5
534
Normal
0.5
978
Normal
0.4
327
Tumor
0.4
1044
Normal
0.4
482
Normal
0.4
818
Normal
0.4
298
Normal
0.4
756
Normal
0.4
714
Normal
0.4
723
Tumor
0.4
698
Normal
0.4
952
Normal
0.4
958
Normal
0.4
488
Normal
0.4
448
Normal
0.4
912
Normal
0.4
416
Normal
0.4
128
Normal
0.4
966
Normal
0.4
1032
Normal
0.4
858
Normal
0.4
957
Tumor
0.4
1046
Normal
0.4
882
Normal
0.4
616
Normal
0.3
546
Normal
0.3
148
Normal
0.3
136
Normal
0.3
728
Normal
0.3
218
Normal
0.3
866
Normal
0.3
212
Normal
0.3
196
Normal
0.3
778
Normal
0.3
528
Normal
0.3
746
Normal
0.3
738
Normal
0.3
411
Tumor
0.3
132
Normal
0.3
518
Normal
0.3
328
Normal
0.3
695
Tumor
0.3
862
Normal
0.3
558
Normal
0.3
426
Normal
0.3
1014
Normal
0.3
696
Normal
0.3
926
Normal
0.3
472
Normal
0.3
515
Tumor
0.3
432
Normal
0.3
722
Normal
0.3
1016
Normal
0.3
982
Normal
0.3
864
Normal
0.3
884
Normal
0.3
981
Tumor
0.3
436
Normal
0.3
314
Normal
0.3
742
Normal
0.3
615
Tumor
0.3
878
Normal
0.3
857
Tumor
0.3
111
Normal
0.3
1042
Normal
0.3
172
Normal
0.3
955
Tumor
0.3
342
Normal
0.3
356
Normal
0.3
494
Normal
0.3
162
Normal
0.3
956
Normal
0.3
114
Normal
0.3
816
Normal
0.3
755
Tumor
0.3
228
Normal
0.3
312
Normal
0.2
362
Normal
0.2
1027
Tumor
0.2
386
Normal
0.2
286
Normal
0.2
313
Tumor
0.2
1028
Normal
0.2
394
Normal
0.2
618
Normal
0.2
262
Normal
0.2
353
Tumor
0.2
786
Normal
0.2
412
Normal
0.2
222
Normal
0.2
186
Normal
0.2
745
Tumor
0.2
516
Normal
0.2
968
Normal
0.2
944
Normal
0.2
364
Normal
0.2
146
Normal
0.2
873
Tumor
0.2
142
Normal
0.2
874
Normal
0.2
938
Normal
0.2
953
Tumor
0.2
922
Normal
0.2
424
Normal
0.2
976
Normal
0.2
1013
Tumor
0.2
232
Normal
0.2
358
Normal
0.2
376
Normal
0.2
478
Normal
0.2
414
Normal
0.2
481
Tumor
0.2
422
Normal
0.2
852
Normal
0.2
648
Normal
0.2
526
Normal
0.2
914
Normal
0.2
664
Normal
0.2
456
Normal
0.2
924
Normal
0.2
428
Normal
0.2
138
Normal
0.2
1031
Tumor
0.2
568
Normal
0.2
284
Normal
0.2
1015
Tumor
0.2
868
Normal
0.2
278
Normal
0.2
741
Tumor
0.2
662
Normal
0.2
366
Normal
0.2
188
Normal
0.2
984
Normal
0.2
131
Tumor
0.2
867
Tumor
0.2
918
Normal
0.2
564
Normal
0.1
214
Normal
0.1
716
Normal
0.1
1021
Tumor
0.1
666
Normal
0.1
635
Tumor
0.1
113
Tumor
0.1
462
Normal
0.1
423
Tumor
0.1
332
Normal
0.1
865
Tumor
0.1
466
Normal
0.1
388
Normal
0.1
434
Normal
0.1
224
Normal
0.1
126
Normal
0.1
724
Normal
0.1
628
Normal
0.1
127
Tumor
0.1
572
Normal
0.1
627
Tumor
0.1
554
Normal
0.1
272
Normal
0.1
663
Tumor
0.1
1045
Tumor
0.1
1025
Tumor
0.1
686
Normal
0.1
141
Tumor
0.1
661
Tumor
0.1
344
Normal
0.1
258
Normal
0.1
474
Normal
0.1
617
Tumor
0.1
396
Normal
0.1
354
Normal
0.1
861
Tumor
0.1
461
Tumor
0.1
446
Normal
0.1
124
Normal
0.1
147
Tumor
0.0
261
Tumor
0.0
392
Normal
0.0
642
Normal
0.0
368
Normal
0.0
452
Normal
0.0
257
Tumor
0.0
744
Normal
0.0
477
Tumor
0.0
498
Normal
0.0
493
Tumor
0.0
468
Normal
0.0
727
Tumor
0.0
557
Tumor
0.0
925
Tumor
0.0
863
Tumor
0.0
161
Tumor
0.0
573
Tumor
0.0
464
Normal
0.0
523
Tumor
0.0
524
Normal
0.0
268
Normal
0.0
536
Normal
0.0
217
Tumor
0.0
1043
Tumor
0.0
223
Tumor
0.0
785
Tumor
0.0
492
Normal
0.0
365
Tumor
0.0
415
Tumor
0.0
192
Normal
0.0
977
Tumor
0.0
384
Normal
0.0
911
Tumor
0.0
721
Tumor
0.0
431
Tumor
0.0
538
Normal
-0.1
533
Tumor
-0.1
352
Normal
-0.1
574
Normal
-0.1
636
Normal
-0.1
355
Tumor
-0.1
497
Tumor
-0.1
954
Normal
-0.1
916
Normal
-0.1
213
Tumor
-0.1
851
Tumor
-0.1
525
Tumor
-0.1
413
Tumor
-0.1
311
Tumor
-0.1
227
Tumor
-0.1
277
Tumor
-0.1
112
Tumor
-0.1
951
Tumor
-0.1
737
Tumor
-0.1
185
Tumor
-0.1
815
Tumor
-0.1
487
Tumor
-0.1
387
Tumor
-0.1
917
Tumor
-0.1
361
Tumor
-0.1
447
Tumor
-0.1
923
Tumor
-0.1
444
Normal
-0.1
135
Tumor
-0.1
483
Tumor
-0.1
363
Tumor
-0.1
191
Tumor
-0.2
341
Tumor
-0.2
553
Tumor
-0.2
672
Normal
-0.2
823
Tumor
-0.2
455
Tumor
-0.2
517
Tumor
-0.2
814
Normal
-0.2
195
Tumor
-0.2
375
Tumor
-0.2
451
Tumor
-0.2
647
Tumor
-0.2
211
Tumor
-0.2
963
Tumor
-0.2
383
Tumor
-0.2
393
Tumor
-0.2
385
Tumor
-0.2
563
Tumor
-0.2
187
Tumor
-0.2
967
Tumor
-0.2
527
Tumor
-0.2
715
Tumor
-0.2
467
Tumor
-0.2
357
Tumor
-0.2
123
Tumor
-0.2
473
Tumor
-0.2
137
Tumor
-0.2
685
Tumor
-0.2
913
Tumor
-0.2
471
Tumor
-0.3
445
Tumor
-0.3
713
Tumor
-0.3
915
Tumor
-0.3
427
Tumor
-0.3
297
Tumor
-0.3
443
Tumor
-0.3
125
Tumor
-0.3
975
Tumor
-0.3
983
Tumor
-0.3
343
Tumor
-0.3
665
Tumor
-0.3
145
Tumor
-0.3
433
Tumor
-0.3
435
Tumor
-0.3
881
Tumor
-0.3
395
Tumor
-0.3
697
Tumor
-0.3
535
Tumor
-0.3
537
Tumor
-0.3
267
Tumor
-0.3
421
Tumor
-0.3
883
Tumor
-0.3
937
Tumor
-0.4
943
Tumor
-0.4
171
Tumor
-0.4
491
Tumor
-0.4
367
Tumor
-0.4
545
Tumor
-0.4
567
Tumor
-0.4
1041
Tumor
-0.4
465
Tumor
-0.4
351
Tumor
-0.4
391
Tumor
-0.4
271
Tumor
-0.4
817
Tumor
-0.4
283
Tumor
-0.4
877
Tumor
-0.4
813
Tumor
-0.4
221
Tumor
-0.4
331
Tumor
-0.4
743
Tumor
-0.5
285
Tumor
-0.5
425
Tumor
-0.5
965
Tumor
-0.5
641
Tumor
-0.5
921
Tumor
-0.5
571
Tumor
-0.5
231
Tumor
-0.6
463
Tumor
-0.7
671
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
