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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLEK2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
175.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
98.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
83.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
68.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
59.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
52.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
51.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
48.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
43.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
43.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
41.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
41.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
40.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
39.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
38.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
38.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
37.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
37.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
37.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
36.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
36.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
34.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
33.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
29.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
28.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
28.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
25.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLEK2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.6
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
102.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
98.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
77.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
47.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
45.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
43.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
39.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
38.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
32.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
31.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
23.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
1.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
214
Normal
2.3
698
Normal
2.0
213
Tumor
2.0
497
Tumor
2.0
911
Tumor
1.9
1016
Normal
1.8
955
Tumor
1.7
523
Tumor
1.7
1044
Normal
1.6
957
Tumor
1.5
192
Normal
1.4
917
Tumor
1.3
474
Normal
1.3
818
Normal
1.3
1028
Normal
1.3
864
Normal
1.3
865
Tumor
1.3
953
Tumor
1.2
924
Normal
1.2
956
Normal
1.2
218
Normal
1.2
478
Normal
1.2
447
Tumor
1.1
697
Tumor
1.0
217
Tumor
1.0
494
Normal
1.0
524
Normal
1.0
191
Tumor
0.9
515
Tumor
0.9
952
Normal
0.9
958
Normal
0.9
968
Normal
0.9
728
Normal
0.9
944
Normal
0.9
943
Tumor
0.9
1015
Tumor
0.8
964
Normal
0.8
663
Tumor
0.8
311
Tumor
0.8
1014
Normal
0.8
966
Normal
0.8
912
Normal
0.8
534
Normal
0.8
444
Normal
0.8
533
Tumor
0.7
727
Tumor
0.7
554
Normal
0.7
448
Normal
0.7
332
Normal
0.7
488
Normal
0.7
755
Tumor
0.7
224
Normal
0.7
1026
Normal
0.6
188
Normal
0.6
852
Normal
0.6
721
Tumor
0.6
278
Normal
0.6
228
Normal
0.6
536
Normal
0.6
1046
Normal
0.5
722
Normal
0.5
195
Tumor
0.5
863
Tumor
0.5
481
Tumor
0.5
514
Normal
0.5
814
Normal
0.5
298
Normal
0.5
977
Tumor
0.5
914
Normal
0.5
878
Normal
0.5
978
Normal
0.5
135
Tumor
0.5
938
Normal
0.5
487
Tumor
0.5
778
Normal
0.5
1032
Normal
0.5
982
Normal
0.4
286
Normal
0.4
883
Tumor
0.4
1043
Tumor
0.4
518
Normal
0.4
723
Tumor
0.4
572
Normal
0.4
331
Tumor
0.4
746
Normal
0.3
222
Normal
0.3
313
Tumor
0.3
824
Normal
0.3
138
Normal
0.3
492
Normal
0.3
563
Tumor
0.3
161
Tumor
0.3
314
Normal
0.3
813
Tumor
0.2
975
Tumor
0.2
196
Normal
0.2
817
Tumor
0.2
132
Normal
0.2
284
Normal
0.2
823
Tumor
0.2
136
Normal
0.2
867
Tumor
0.2
724
Normal
0.1
172
Normal
0.1
493
Tumor
0.1
925
Tumor
0.1
648
Normal
0.1
185
Tumor
0.1
967
Tumor
0.1
741
Tumor
0.1
882
Normal
0.1
737
Tumor
0.1
538
Normal
0.1
951
Tumor
0.0
283
Tumor
0.0
672
Normal
0.0
516
Normal
0.0
137
Tumor
0.0
482
Normal
0.0
146
Normal
0.0
916
Normal
0.0
535
Tumor
0.0
145
Tumor
0.0
884
Normal
0.0
297
Tumor
0.0
462
Normal
0.0
141
Tumor
0.0
471
Tumor
0.0
187
Tumor
0.0
484
Normal
-0.1
162
Normal
-0.1
546
Normal
-0.1
862
Normal
-0.1
528
Normal
-0.1
461
Tumor
-0.1
491
Tumor
-0.1
881
Tumor
-0.1
498
Normal
-0.1
545
Tumor
-0.1
716
Normal
-0.2
756
Normal
-0.2
742
Normal
-0.2
868
Normal
-0.2
148
Normal
-0.2
913
Tumor
-0.2
472
Normal
-0.2
954
Normal
-0.2
221
Tumor
-0.2
664
Normal
-0.2
212
Normal
-0.2
696
Normal
-0.2
714
Normal
-0.2
1042
Normal
-0.3
277
Tumor
-0.3
923
Tumor
-0.3
142
Normal
-0.3
223
Tumor
-0.3
662
Normal
-0.3
526
Normal
-0.3
285
Tumor
-0.3
715
Tumor
-0.3
434
Normal
-0.3
477
Tumor
-0.3
312
Normal
-0.3
1013
Tumor
-0.3
976
Normal
-0.3
574
Normal
-0.4
738
Normal
-0.4
874
Normal
-0.4
877
Tumor
-0.4
786
Normal
-0.4
743
Tumor
-0.4
922
Normal
-0.5
671
Tumor
-0.5
527
Tumor
-0.5
211
Tumor
-0.5
227
Tumor
-0.5
666
Normal
-0.5
695
Tumor
-0.5
686
Normal
-0.5
965
Tumor
-0.5
186
Normal
-0.6
1045
Tumor
-0.6
777
Tumor
-0.6
981
Tumor
-0.6
147
Tumor
-0.6
744
Normal
-0.6
713
Tumor
-0.6
483
Tumor
-0.6
525
Tumor
-0.6
171
Tumor
-0.6
937
Tumor
-0.7
1031
Tumor
-0.7
857
Tumor
-0.7
517
Tumor
-0.8
665
Tumor
-0.8
984
Normal
-0.8
866
Normal
-0.8
558
Normal
-0.8
564
Normal
-0.8
963
Tumor
-0.8
568
Normal
-0.8
983
Tumor
-0.8
513
Tumor
-0.9
1021
Tumor
-0.9
647
Tumor
-0.9
745
Tumor
-0.9
873
Tumor
-0.9
921
Tumor
-0.9
851
Tumor
-0.9
433
Tumor
-0.9
537
Tumor
-1.0
785
Tumor
-1.0
926
Normal
-1.0
1022
Normal
-1.0
685
Tumor
-1.1
553
Tumor
-1.1
1025
Tumor
-1.2
571
Tumor
-1.2
918
Normal
-1.3
473
Tumor
-1.3
661
Tumor
-1.3
446
Normal
-1.3
557
Tumor
-1.3
858
Normal
-1.3
131
Tumor
-1.4
567
Tumor
-1.4
573
Tumor
-1.4
861
Tumor
-1.4
1027
Tumor
-1.5
915
Tumor
-1.6
445
Tumor
-1.6
815
Tumor
-1.6
816
Normal
-1.8
1041
Tumor
-1.9
432
Normal
-2.0
436
Normal
-2.2
443
Tumor
-2.2
431
Tumor
-2.4
435
Tumor
-3.1
351
Tumor
N/A
231
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
267
Tumor
N/A
388
Normal
N/A
268
Normal
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
