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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRMT5 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
71.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
60.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
56.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
54.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
52.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
48.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
47.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
47.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
47.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
44.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
43.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
43.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
42.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
42.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
41.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
40.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
38.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
38.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
38.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
38.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
37.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
37.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
34.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
34.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
34.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
34.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
33.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
33.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
33.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
32.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
31.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
31.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
30.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
30.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
30.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
30.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
30.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
29.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
29.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
28.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
27.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
27.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
27.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
25.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
25.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
24.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
23.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
22.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
22.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
22.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
21.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
21.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
21.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
21.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
16.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRMT5 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.5
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
128.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
43.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
42.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
42.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
41.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
40.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
37.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
36.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
34.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
32.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
32.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
31.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
31.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
29.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
27.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
27.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
26.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
19.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
0.9
965
Tumor
0.7
1027
Tumor
0.7
571
Tumor
0.6
527
Tumor
0.6
391
Tumor
0.5
112
Tumor
0.5
131
Tumor
0.5
741
Tumor
0.5
865
Tumor
0.5
313
Tumor
0.5
815
Tumor
0.5
445
Tumor
0.4
967
Tumor
0.4
123
Tumor
0.4
981
Tumor
0.4
357
Tumor
0.4
525
Tumor
0.4
137
Tumor
0.4
127
Tumor
0.4
413
Tumor
0.4
537
Tumor
0.4
393
Tumor
0.4
477
Tumor
0.4
951
Tumor
0.4
473
Tumor
0.3
663
Tumor
0.3
515
Tumor
0.3
327
Tumor
0.3
873
Tumor
0.3
353
Tumor
0.3
395
Tumor
0.3
351
Tumor
0.3
777
Tumor
0.3
665
Tumor
0.3
261
Tumor
0.3
523
Tumor
0.3
695
Tumor
0.3
745
Tumor
0.3
431
Tumor
0.3
615
Tumor
0.3
483
Tumor
0.3
342
Normal
0.3
755
Tumor
0.2
727
Tumor
0.2
1013
Tumor
0.2
863
Tumor
0.2
361
Tumor
0.2
883
Tumor
0.2
513
Tumor
0.2
661
Tumor
0.2
375
Tumor
0.2
436
Normal
0.2
953
Tumor
0.2
283
Tumor
0.2
944
Normal
0.2
185
Tumor
0.2
172
Normal
0.2
411
Tumor
0.2
383
Tumor
0.2
877
Tumor
0.2
1045
Tumor
0.2
394
Normal
0.2
358
Normal
0.2
642
Normal
0.2
535
Tumor
0.1
923
Tumor
0.1
222
Normal
0.1
957
Tumor
0.1
955
Tumor
0.1
387
Tumor
0.1
267
Tumor
0.1
983
Tumor
0.1
366
Normal
0.1
862
Normal
0.1
297
Tumor
0.1
617
Tumor
0.1
354
Normal
0.1
952
Normal
0.1
618
Normal
0.1
113
Tumor
0.1
715
Tumor
0.1
368
Normal
0.1
376
Normal
0.1
365
Tumor
0.1
392
Normal
0.1
1041
Tumor
0.1
487
Tumor
0.1
186
Normal
0.1
446
Normal
0.1
938
Normal
0.1
698
Normal
0.1
433
Tumor
0.1
723
Tumor
0.1
482
Normal
0.1
648
Normal
0.1
344
Normal
0.1
627
Tumor
0.1
497
Tumor
0.1
443
Tumor
0.1
217
Tumor
0.1
737
Tumor
0.1
388
Normal
0.1
425
Tumor
0.1
432
Normal
0.1
956
Normal
0.1
355
Tumor
0.1
738
Normal
0.1
664
Normal
0.1
466
Normal
0.1
214
Normal
0.1
162
Normal
0.1
911
Tumor
0.1
714
Normal
0.1
456
Normal
0.1
616
Normal
0.1
257
Tumor
0.1
728
Normal
0.1
145
Tumor
0.1
1026
Normal
0.1
1015
Tumor
0.0
272
Normal
0.0
148
Normal
0.0
386
Normal
0.0
744
Normal
0.0
924
Normal
0.0
367
Tumor
0.0
448
Normal
0.0
227
Tumor
0.0
1025
Tumor
0.0
914
Normal
0.0
218
Normal
0.0
385
Tumor
0.0
285
Tumor
0.0
396
Normal
0.0
864
Normal
0.0
228
Normal
0.0
467
Tumor
0.0
452
Normal
0.0
666
Normal
0.0
213
Tumor
0.0
742
Normal
0.0
636
Normal
0.0
635
Tumor
0.0
196
Normal
0.0
298
Normal
0.0
125
Tumor
0.0
311
Tumor
0.0
628
Normal
0.0
435
Tumor
0.0
416
Normal
0.0
262
Normal
0.0
722
Normal
0.0
925
Tumor
0.0
1022
Normal
0.0
472
Normal
0.0
861
Tumor
0.0
187
Tumor
0.0
746
Normal
0.0
128
Normal
0.0
192
Normal
0.0
286
Normal
0.0
534
Normal
0.0
915
Tumor
0.0
533
Tumor
0.0
331
Tumor
0.0
352
Normal
0.0
696
Normal
0.0
1046
Normal
0.0
982
Normal
0.0
426
Normal
0.0
463
Tumor
0.0
662
Normal
0.0
866
Normal
0.0
943
Tumor
0.0
132
Normal
0.0
232
Normal
0.0
964
Normal
0.0
474
Normal
0.0
135
Tumor
0.0
912
Normal
0.0
258
Normal
0.0
818
Normal
0.0
191
Tumor
0.0
756
Normal
0.0
455
Tumor
0.0
743
Tumor
0.0
1021
Tumor
0.0
481
Tumor
0.0
451
Tumor
0.0
136
Normal
0.0
223
Tumor
0.0
384
Normal
0.0
332
Normal
0.0
882
Normal
0.0
328
Normal
0.0
858
Normal
0.0
362
Normal
0.0
913
Tumor
0.0
966
Normal
0.0
415
Tumor
0.0
464
Normal
0.0
488
Normal
-0.1
231
Tumor
-0.1
697
Tumor
-0.1
364
Normal
-0.1
878
Normal
-0.1
546
Normal
-0.1
824
Normal
-0.1
528
Normal
-0.1
161
Tumor
-0.1
278
Normal
-0.1
314
Normal
-0.1
518
Normal
-0.1
447
Tumor
-0.1
462
Normal
-0.1
188
Normal
-0.1
412
Normal
-0.1
1016
Normal
-0.1
312
Normal
-0.1
724
Normal
-0.1
114
Normal
-0.1
111
Normal
-0.1
146
Normal
-0.1
816
Normal
-0.1
427
Tumor
-0.1
494
Normal
-0.1
356
Normal
-0.1
557
Tumor
-0.1
211
Tumor
-0.1
647
Tumor
-0.1
568
Normal
-0.1
553
Tumor
-0.1
874
Normal
-0.1
414
Normal
-0.1
922
Normal
-0.1
1044
Normal
-0.1
867
Tumor
-0.1
468
Normal
-0.1
221
Tumor
-0.1
465
Tumor
-0.1
434
Normal
-0.1
484
Normal
-0.1
424
Normal
-0.1
868
Normal
-0.1
545
Tumor
-0.1
1031
Tumor
-0.1
563
Tumor
-0.1
343
Tumor
-0.1
926
Normal
-0.1
478
Normal
-0.1
421
Tumor
-0.1
672
Normal
-0.1
573
Tumor
-0.1
516
Normal
-0.1
461
Tumor
-0.1
554
Normal
-0.1
514
Normal
-0.1
813
Tumor
-0.1
138
Normal
-0.1
574
Normal
-0.1
284
Normal
-0.1
976
Normal
-0.1
1042
Normal
-0.1
958
Normal
-0.1
212
Normal
-0.1
721
Tumor
-0.1
444
Normal
-0.1
954
Normal
-0.1
142
Normal
-0.1
195
Tumor
-0.1
785
Tumor
-0.1
975
Tumor
-0.1
1014
Normal
-0.2
857
Tumor
-0.2
536
Normal
-0.2
268
Normal
-0.2
778
Normal
-0.2
558
Normal
-0.2
428
Normal
-0.2
493
Tumor
-0.2
984
Normal
-0.2
1032
Normal
-0.2
968
Normal
-0.2
422
Normal
-0.2
277
Tumor
-0.2
884
Normal
-0.2
716
Normal
-0.2
526
Normal
-0.2
1028
Normal
-0.2
916
Normal
-0.2
572
Normal
-0.2
517
Tumor
-0.2
524
Normal
-0.2
786
Normal
-0.2
564
Normal
-0.2
671
Tumor
-0.2
921
Tumor
-0.2
918
Normal
-0.2
917
Tumor
-0.2
814
Normal
-0.2
224
Normal
-0.2
1043
Tumor
-0.2
124
Normal
-0.2
686
Normal
-0.2
713
Tumor
-0.2
491
Tumor
-0.2
937
Tumor
-0.2
881
Tumor
-0.2
852
Normal
-0.2
641
Tumor
-0.2
423
Tumor
-0.2
471
Tumor
-0.3
126
Normal
-0.3
363
Tumor
-0.3
341
Tumor
-0.3
977
Tumor
-0.3
171
Tumor
-0.3
147
Tumor
-0.3
538
Normal
-0.3
978
Normal
-0.3
567
Tumor
-0.3
141
Tumor
-0.3
271
Tumor
-0.3
498
Normal
-0.3
963
Tumor
-0.3
851
Tumor
-0.3
823
Tumor
-0.4
492
Normal
-0.4
817
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
