We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FKBP3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
44.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
111.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
106.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
105.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
98.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
98.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
97.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
95.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
93.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
88.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
87.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
87.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
86.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
86.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
83.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
80.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
79.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
78.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
77.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
76.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
75.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
75.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
74.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
73.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
72.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
72.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
71.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
70.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
70.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
70.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
70.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
69.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
69.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
69.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
69.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
68.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
68.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
66.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
66.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
65.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
64.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
64.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
64.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
64.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
63.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
63.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
63.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
63.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
63.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
63.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
63.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
62.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
62.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
62.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
62.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
61.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
61.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
61.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
61.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
60.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
60.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
60.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
60.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
60.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
60.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
60.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
59.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
59.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
59.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
58.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
58.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
58.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
58.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
58.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
57.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
57.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
56.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
56.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
56.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
56.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
55.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
55.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
55.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
54.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
54.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
54.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
54.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
54.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
54.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
54.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
54.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
54.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
53.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
53.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
52.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
52.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
52.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
52.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
52.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
51.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
51.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
51.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
51.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
51.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
51.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
50.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
50.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
50.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
50.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
50.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
50.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
49.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
49.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
49.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
49.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
49.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
49.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
49.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
49.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
49.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
48.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
48.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
48.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
48.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
48.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
48.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
48.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
47.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
47.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
47.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
47.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
47.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
47.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
46.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
46.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
46.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
46.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
46.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
46.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
45.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
45.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
45.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
45.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
45.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
45.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
44.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
44.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
44.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
44.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
44.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
44.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
44.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
44.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
44.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
44.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
44.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
44.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
43.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
43.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
43.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
43.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
43.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
43.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
43.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
43.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
42.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
42.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
42.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
42.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
42.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
42.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
42.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
42.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
42.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
41.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
41.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
41.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
41.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
41.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
41.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
40.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
40.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
40.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
40.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
40.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
40.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
40.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
40.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
39.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
39.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
39.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
39.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
39.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
39.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
39.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
38.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
38.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
38.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
38.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
38.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
38.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
38.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
38.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
38.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
38.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
38.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
38.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
37.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
37.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
37.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
37.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
37.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
37.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
37.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
37.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
37.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
37.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
37.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
36.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
36.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
36.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
36.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
36.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
36.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
36.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
36.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
36.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
36.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
36.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
35.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
35.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
35.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
35.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
35.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
35.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
35.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
35.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
35.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
35.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
35.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
35.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
35.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
34.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
34.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
34.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
34.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
34.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
34.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
34.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
34.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
34.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
34.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
34.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
34.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
34.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
33.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
33.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
33.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
33.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
33.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
33.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
33.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
33.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
33.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
33.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
32.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
32.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
32.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
32.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
32.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
32.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
32.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
32.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
32.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
32.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
32.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
31.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
31.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
31.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
31.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
31.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
31.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
31.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
31.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
31.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
31.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
30.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
30.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
30.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
30.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
29.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
29.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
29.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
28.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
28.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
28.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
27.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
27.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
26.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
26.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
26.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
25.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
24.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
24.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
23.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
23.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
21.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FKBP3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.6
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
149.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
125.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
114.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
106.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
103.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
100.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
96.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
92.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
87.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
85.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
83.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
77.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
76.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
76.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
75.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
75.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
74.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
70.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
70.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
70.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
70.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
69.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
69.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
67.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
67.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
67.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
66.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
66.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
66.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
65.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
65.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
65.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
64.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
64.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
64.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
64.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
63.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
62.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
62.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
62.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
61.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
61.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
61.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
60.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
60.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
60.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
59.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
59.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
58.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
58.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
58.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
58.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
57.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
57.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
56.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
56.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
56.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
55.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
55.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
55.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
55.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
54.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
54.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
54.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
53.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
52.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
52.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
52.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
52.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
52.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
52.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
52.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
51.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
51.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
51.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
51.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
51.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
50.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
50.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
50.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
50.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
50.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
50.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
49.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
48.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
47.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
47.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
47.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
46.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
46.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
46.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
46.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
46.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
46.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
46.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
46.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
46.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
46.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
46.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
45.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
45.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
45.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
44.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
44.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
44.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
44.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
43.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
43.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
43.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
42.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
42.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
42.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
42.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
42.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
42.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
41.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
41.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
41.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
41.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
40.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
40.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
40.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
40.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
40.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
40.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
40.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
40.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
39.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
39.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
39.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
39.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
39.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
39.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
39.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
39.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
39.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
39.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
38.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
38.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
38.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
38.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
38.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
38.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
38.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
37.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
37.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
37.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
37.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
37.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
37.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
37.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
37.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
37.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
36.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
36.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
36.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
36.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
36.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
36.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
36.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
36.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
35.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
35.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
35.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
34.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
34.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
34.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
34.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
33.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
33.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
33.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
33.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
32.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
32.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
32.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
32.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
32.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
31.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
31.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
31.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
31.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
31.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
30.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
29.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
29.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
29.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
29.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
28.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
28.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
27.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
26.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
923
Tumor
0.8
1025
Tumor
0.8
1027
Tumor
0.8
863
Tumor
0.7
777
Tumor
0.7
515
Tumor
0.7
865
Tumor
0.7
727
Tumor
0.7
487
Tumor
0.7
635
Tumor
0.7
523
Tumor
0.6
815
Tumor
0.6
921
Tumor
0.6
685
Tumor
0.6
455
Tumor
0.5
527
Tumor
0.5
137
Tumor
0.5
357
Tumor
0.5
227
Tumor
0.5
1043
Tumor
0.5
1013
Tumor
0.5
221
Tumor
0.5
257
Tumor
0.5
285
Tumor
0.4
967
Tumor
0.4
737
Tumor
0.4
135
Tumor
0.4
617
Tumor
0.4
363
Tumor
0.4
411
Tumor
0.4
445
Tumor
0.4
481
Tumor
0.4
981
Tumor
0.4
471
Tumor
0.4
743
Tumor
0.3
131
Tumor
0.3
141
Tumor
0.3
393
Tumor
0.3
723
Tumor
0.3
514
Normal
0.3
365
Tumor
0.3
922
Normal
0.3
497
Tumor
0.3
462
Normal
0.3
261
Tumor
0.3
355
Tumor
0.2
983
Tumor
0.2
918
Normal
0.2
745
Tumor
0.2
944
Normal
0.2
953
Tumor
0.2
755
Tumor
0.2
277
Tumor
0.2
924
Normal
0.2
484
Normal
0.2
884
Normal
0.2
978
Normal
0.2
1028
Normal
0.2
627
Tumor
0.2
526
Normal
0.2
864
Normal
0.2
881
Tumor
0.2
518
Normal
0.2
975
Tumor
0.2
1022
Normal
0.2
558
Normal
0.2
516
Normal
0.2
641
Tumor
0.2
721
Tumor
0.2
1042
Normal
0.2
984
Normal
0.2
128
Normal
0.2
1016
Normal
0.2
313
Tumor
0.2
741
Tumor
0.2
636
Normal
0.2
557
Tumor
0.2
448
Normal
0.2
356
Normal
0.2
353
Tumor
0.2
915
Tumor
0.2
271
Tumor
0.2
615
Tumor
0.2
412
Normal
0.2
463
Tumor
0.2
214
Normal
0.2
698
Normal
0.2
738
Normal
0.2
628
Normal
0.2
742
Normal
0.2
862
Normal
0.2
1032
Normal
0.2
916
Normal
0.1
861
Tumor
0.1
695
Tumor
0.1
482
Normal
0.1
954
Normal
0.1
866
Normal
0.1
494
Normal
0.1
113
Tumor
0.1
926
Normal
0.1
568
Normal
0.1
686
Normal
0.1
493
Tumor
0.1
616
Normal
0.1
982
Normal
0.1
553
Tumor
0.1
125
Tumor
0.1
867
Tumor
0.1
513
Tumor
0.1
648
Normal
0.1
1044
Normal
0.1
873
Tumor
0.1
472
Normal
0.1
1014
Normal
0.1
746
Normal
0.1
112
Tumor
0.1
968
Normal
0.1
817
Tumor
0.1
421
Tumor
0.1
912
Normal
0.1
728
Normal
0.1
361
Tumor
0.1
423
Tumor
0.1
362
Normal
0.1
661
Tumor
0.1
938
Normal
0.1
564
Normal
0.1
416
Normal
0.1
1046
Normal
0.1
114
Normal
0.1
488
Normal
0.1
223
Tumor
0.1
385
Tumor
0.1
785
Tumor
0.1
435
Tumor
0.1
286
Normal
0.1
328
Normal
0.1
212
Normal
0.1
857
Tumor
0.1
1031
Tumor
0.1
433
Tumor
0.1
228
Normal
0.1
533
Tumor
0.1
111
Normal
0.1
778
Normal
0.1
714
Normal
0.1
952
Normal
0.1
1041
Tumor
0.1
195
Tumor
0.1
913
Tumor
0.1
132
Normal
0.1
185
Tumor
0.1
958
Normal
0.1
955
Tumor
0.1
965
Tumor
0.1
474
Normal
0.1
852
Normal
0.1
868
Normal
0.1
696
Normal
0.1
977
Tumor
0.1
956
Normal
0.1
436
Normal
0.1
914
Normal
0.1
284
Normal
0.0
816
Normal
0.0
1015
Tumor
0.0
528
Normal
0.0
546
Normal
0.0
824
Normal
0.0
431
Tumor
0.0
882
Normal
0.0
572
Normal
0.0
662
Normal
0.0
813
Tumor
0.0
534
Normal
0.0
524
Normal
0.0
1045
Tumor
0.0
196
Normal
0.0
395
Tumor
0.0
1021
Tumor
0.0
976
Normal
0.0
858
Normal
0.0
447
Tumor
0.0
461
Tumor
0.0
883
Tumor
0.0
618
Normal
0.0
722
Normal
0.0
376
Normal
0.0
664
Normal
0.0
786
Normal
0.0
136
Normal
0.0
126
Normal
0.0
358
Normal
0.0
452
Normal
0.0
468
Normal
0.0
466
Normal
0.0
756
Normal
0.0
413
Tumor
0.0
492
Normal
0.0
218
Normal
0.0
172
Normal
0.0
272
Normal
0.0
434
Normal
0.0
127
Tumor
0.0
364
Normal
0.0
1026
Normal
0.0
964
Normal
0.0
966
Normal
0.0
642
Normal
0.0
716
Normal
0.0
663
Tumor
0.0
574
Normal
0.0
142
Normal
0.0
477
Tumor
0.0
498
Normal
0.0
414
Normal
0.0
387
Tumor
0.0
715
Tumor
0.0
874
Normal
0.0
391
Tumor
-0.1
422
Normal
-0.1
262
Normal
-0.1
148
Normal
-0.1
818
Normal
-0.1
665
Tumor
-0.1
213
Tumor
-0.1
878
Normal
-0.1
222
Normal
-0.1
744
Normal
-0.1
444
Normal
-0.1
538
Normal
-0.1
432
Normal
-0.1
312
Normal
-0.1
145
Tumor
-0.1
352
Normal
-0.1
467
Tumor
-0.1
138
Normal
-0.1
298
Normal
-0.1
672
Normal
-0.1
443
Tumor
-0.1
187
Tumor
-0.1
911
Tumor
-0.1
571
Tumor
-0.1
517
Tumor
-0.1
464
Normal
-0.1
666
Normal
-0.1
388
Normal
-0.1
188
Normal
-0.1
963
Tumor
-0.1
232
Normal
-0.1
186
Normal
-0.1
428
Normal
-0.1
368
Normal
-0.1
814
Normal
-0.1
124
Normal
-0.2
937
Tumor
-0.2
535
Tumor
-0.2
392
Normal
-0.2
554
Normal
-0.2
278
Normal
-0.2
396
Normal
-0.2
424
Normal
-0.2
386
Normal
-0.2
563
Tumor
-0.2
384
Normal
-0.2
446
Normal
-0.2
146
Normal
-0.2
342
Normal
-0.2
267
Tumor
-0.2
823
Tumor
-0.2
258
Normal
-0.2
344
Normal
-0.2
465
Tumor
-0.2
366
Normal
-0.2
713
Tumor
-0.2
425
Tumor
-0.2
332
Normal
-0.2
224
Normal
-0.2
297
Tumor
-0.2
957
Tumor
-0.2
162
Normal
-0.2
478
Normal
-0.2
383
Tumor
-0.2
877
Tumor
-0.2
394
Normal
-0.2
427
Tumor
-0.2
161
Tumor
-0.2
917
Tumor
-0.2
314
Normal
-0.2
217
Tumor
-0.2
473
Tumor
-0.3
268
Normal
-0.3
943
Tumor
-0.3
491
Tumor
-0.3
671
Tumor
-0.3
536
Normal
-0.3
456
Normal
-0.3
724
Normal
-0.3
697
Tumor
-0.3
354
Normal
-0.3
283
Tumor
-0.3
311
Tumor
-0.3
327
Tumor
-0.3
192
Normal
-0.3
925
Tumor
-0.3
426
Normal
-0.3
647
Tumor
-0.4
415
Tumor
-0.4
147
Tumor
-0.4
483
Tumor
-0.4
343
Tumor
-0.4
451
Tumor
-0.4
375
Tumor
-0.4
191
Tumor
-0.5
851
Tumor
-0.5
573
Tumor
-0.5
123
Tumor
-0.5
951
Tumor
-0.5
525
Tumor
-0.5
351
Tumor
-0.6
367
Tumor
-0.6
545
Tumor
-0.6
211
Tumor
-0.7
567
Tumor
-0.7
341
Tumor
-0.7
537
Tumor
-0.7
331
Tumor
-0.7
171
Tumor
-0.8
231
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
