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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDAC10 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
27.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
18.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDAC10 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.1
Number of samples
231
Samples
Sample
Description
TPM
DO45297
0 years, female, NA, stage:4, dead, 1260 days
52.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
39.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
39.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
31.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
635
Tumor
1.5
112
Tumor
1.1
967
Tumor
1.0
951
Tumor
0.9
715
Tumor
0.8
617
Tumor
0.7
127
Tumor
0.7
443
Tumor
0.7
341
Tumor
0.7
435
Tumor
0.6
231
Tumor
0.6
415
Tumor
0.6
416
Normal
0.6
911
Tumor
0.6
195
Tumor
0.6
1031
Tumor
0.6
513
Tumor
0.5
641
Tumor
0.5
671
Tumor
0.5
171
Tumor
0.5
1042
Normal
0.5
956
Normal
0.5
525
Tumor
0.5
357
Tumor
0.5
944
Normal
0.5
616
Normal
0.5
257
Tumor
0.5
228
Normal
0.4
727
Tumor
0.4
484
Normal
0.4
862
Normal
0.4
267
Tumor
0.4
958
Normal
0.4
196
Normal
0.4
471
Tumor
0.4
723
Tumor
0.4
366
Normal
0.4
665
Tumor
0.4
386
Normal
0.4
564
Normal
0.4
1032
Normal
0.4
1046
Normal
0.4
493
Tumor
0.4
756
Normal
0.4
864
Normal
0.4
721
Tumor
0.4
873
Tumor
0.4
271
Tumor
0.4
364
Normal
0.4
456
Normal
0.4
955
Tumor
0.4
571
Tumor
0.4
1026
Normal
0.4
448
Normal
0.4
132
Normal
0.3
742
Normal
0.3
1044
Normal
0.3
666
Normal
0.3
186
Normal
0.3
358
Normal
0.3
451
Tumor
0.3
636
Normal
0.3
534
Normal
0.3
533
Tumor
0.3
553
Tumor
0.3
882
Normal
0.3
938
Normal
0.3
914
Normal
0.3
258
Normal
0.3
884
Normal
0.3
535
Tumor
0.3
926
Normal
0.3
412
Normal
0.3
465
Tumor
0.3
452
Normal
0.3
212
Normal
0.3
722
Normal
0.3
912
Normal
0.3
685
Tumor
0.3
214
Normal
0.3
191
Tumor
0.3
446
Normal
0.3
342
Normal
0.3
376
Normal
0.3
222
Normal
0.3
311
Tumor
0.3
618
Normal
0.3
494
Normal
0.3
648
Normal
0.2
824
Normal
0.2
964
Normal
0.2
516
Normal
0.2
362
Normal
0.2
136
Normal
0.2
883
Tumor
0.2
327
Tumor
0.2
473
Tumor
0.2
916
Normal
0.2
627
Tumor
0.2
716
Normal
0.2
924
Normal
0.2
878
Normal
0.2
568
Normal
0.2
466
Normal
0.2
1015
Tumor
0.2
312
Normal
0.2
1022
Normal
0.2
284
Normal
0.2
563
Tumor
0.2
138
Normal
0.2
331
Tumor
0.2
1014
Normal
0.2
162
Normal
0.2
363
Tumor
0.2
918
Normal
0.2
421
Tumor
0.2
925
Tumor
0.2
1016
Normal
0.2
148
Normal
0.2
537
Tumor
0.2
221
Tumor
0.2
388
Normal
0.2
172
Normal
0.2
874
Normal
0.2
224
Normal
0.2
272
Normal
0.2
314
Normal
0.2
432
Normal
0.2
664
Normal
0.2
113
Tumor
0.2
422
Normal
0.2
982
Normal
0.2
976
Normal
0.2
464
Normal
0.2
262
Normal
0.2
672
Normal
0.1
546
Normal
0.1
818
Normal
0.1
728
Normal
0.1
662
Normal
0.1
468
Normal
0.1
278
Normal
0.1
954
Normal
0.1
943
Tumor
0.1
354
Normal
0.1
146
Normal
0.1
188
Normal
0.1
137
Tumor
0.1
332
Normal
0.1
698
Normal
0.1
952
Normal
0.1
1043
Tumor
0.1
462
Normal
0.1
866
Normal
0.1
223
Tumor
0.1
192
Normal
0.1
436
Normal
0.1
187
Tumor
0.1
111
Normal
0.1
714
Normal
0.1
428
Normal
0.1
647
Tumor
0.1
922
Normal
0.1
696
Normal
0.1
981
Tumor
0.1
978
Normal
0.1
695
Tumor
0.1
966
Normal
0.1
424
Normal
0.1
455
Tumor
0.1
963
Tumor
0.1
131
Tumor
0.1
482
Normal
0.1
858
Normal
0.1
268
Normal
0.1
746
Normal
0.1
574
Normal
0.1
852
Normal
0.1
218
Normal
0.1
461
Tumor
0.1
915
Tumor
0.1
426
Normal
0.1
123
Tumor
0.1
392
Normal
0.0
352
Normal
0.0
126
Normal
0.0
353
Tumor
0.0
984
Normal
0.0
514
Normal
0.0
396
Normal
0.0
526
Normal
0.0
232
Normal
0.0
185
Tumor
0.0
488
Normal
0.0
628
Normal
0.0
778
Normal
0.0
384
Normal
0.0
572
Normal
0.0
444
Normal
0.0
393
Tumor
0.0
868
Normal
0.0
527
Tumor
0.0
738
Normal
0.0
394
Normal
0.0
387
Tumor
0.0
786
Normal
0.0
968
Normal
0.0
921
Tumor
0.0
528
Normal
0.0
328
Normal
0.0
391
Tumor
0.0
427
Tumor
0.0
743
Tumor
0.0
518
Normal
0.0
686
Normal
0.0
356
Normal
0.0
492
Normal
0.0
817
Tumor
0.0
286
Normal
0.0
472
Normal
0.0
423
Tumor
0.0
713
Tumor
-0.1
744
Normal
-0.1
474
Normal
-0.1
124
Normal
-0.1
368
Normal
-0.1
361
Tumor
-0.1
447
Tumor
-0.1
478
Normal
-0.1
755
Tumor
-0.1
297
Tumor
-0.1
1045
Tumor
-0.1
975
Tumor
-0.1
1028
Normal
-0.1
147
Tumor
-0.1
414
Normal
-0.1
937
Tumor
-0.1
777
Tumor
-0.1
917
Tumor
-0.1
816
Normal
-0.1
344
Normal
-0.1
545
Tumor
-0.1
1025
Tumor
-0.1
145
Tumor
-0.1
298
Normal
-0.1
642
Normal
-0.1
1041
Tumor
-0.1
128
Normal
-0.1
481
Tumor
-0.1
217
Tumor
-0.1
538
Normal
-0.2
261
Tumor
-0.2
434
Normal
-0.2
425
Tumor
-0.2
615
Tumor
-0.2
524
Normal
-0.2
411
Tumor
-0.2
977
Tumor
-0.2
1021
Tumor
-0.2
877
Tumor
-0.2
536
Normal
-0.2
395
Tumor
-0.2
487
Tumor
-0.2
483
Tumor
-0.2
867
Tumor
-0.2
498
Normal
-0.2
477
Tumor
-0.2
142
Normal
-0.2
365
Tumor
-0.2
554
Normal
-0.2
923
Tumor
-0.3
114
Normal
-0.3
497
Tumor
-0.3
445
Tumor
-0.3
433
Tumor
-0.3
573
Tumor
-0.3
523
Tumor
-0.3
135
Tumor
-0.3
737
Tumor
-0.3
467
Tumor
-0.3
141
Tumor
-0.3
857
Tumor
-0.3
724
Normal
-0.3
463
Tumor
-0.3
367
Tumor
-0.3
283
Tumor
-0.3
277
Tumor
-0.4
741
Tumor
-0.4
558
Normal
-0.4
213
Tumor
-0.4
697
Tumor
-0.4
351
Tumor
-0.4
355
Tumor
-0.4
881
Tumor
-0.4
663
Tumor
-0.4
861
Tumor
-0.4
745
Tumor
-0.4
815
Tumor
-0.5
343
Tumor
-0.5
567
Tumor
-0.5
957
Tumor
-0.5
413
Tumor
-0.5
385
Tumor
-0.5
211
Tumor
-0.5
813
Tumor
-0.5
383
Tumor
-0.5
814
Normal
-0.5
823
Tumor
-0.6
161
Tumor
-0.6
913
Tumor
-0.6
313
Tumor
-0.6
557
Tumor
-0.6
661
Tumor
-0.6
431
Tumor
-0.6
491
Tumor
-0.6
965
Tumor
-0.7
1027
Tumor
-0.7
515
Tumor
-0.7
227
Tumor
-0.7
785
Tumor
-0.7
863
Tumor
-0.7
983
Tumor
-0.7
125
Tumor
-0.7
375
Tumor
-0.7
517
Tumor
-0.7
1013
Tumor
-0.8
953
Tumor
-0.8
285
Tumor
-0.8
865
Tumor
-0.8
851
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
