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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZC3H7B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
60.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
56.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
50.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
44.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
40.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
38.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
38.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
38.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
37.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
37.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
36.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
35.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
35.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
35.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
33.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
33.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
32.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
31.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
31.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
29.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
29.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
29.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
27.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
27.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
27.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
27.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
27.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
26.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
22.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZC3H7B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.3
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
49.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
41.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
37.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
36.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
36.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
36.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
30.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
29.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
29.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
29.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
367
Tumor
0.6
314
Normal
0.6
743
Tumor
0.5
727
Tumor
0.5
443
Tumor
0.5
661
Tumor
0.5
222
Normal
0.5
616
Normal
0.4
967
Tumor
0.4
436
Normal
0.4
965
Tumor
0.4
568
Normal
0.4
362
Normal
0.4
636
Normal
0.4
564
Normal
0.4
628
Normal
0.4
983
Tumor
0.4
331
Tumor
0.4
756
Normal
0.4
285
Tumor
0.4
742
Normal
0.3
332
Normal
0.3
786
Normal
0.3
572
Normal
0.3
111
Normal
0.3
468
Normal
0.3
368
Normal
0.3
218
Normal
0.3
452
Normal
0.3
446
Normal
0.3
356
Normal
0.3
217
Tumor
0.3
196
Normal
0.3
723
Tumor
0.3
518
Normal
0.3
298
Normal
0.3
464
Normal
0.3
223
Tumor
0.3
571
Tumor
0.3
445
Tumor
0.3
466
Normal
0.3
648
Normal
0.3
456
Normal
0.3
112
Tumor
0.3
146
Normal
0.3
528
Normal
0.3
137
Tumor
0.3
937
Tumor
0.3
728
Normal
0.3
312
Normal
0.3
617
Tumor
0.3
738
Normal
0.3
618
Normal
0.3
515
Tumor
0.3
258
Normal
0.3
414
Normal
0.3
666
Normal
0.3
376
Normal
0.3
128
Normal
0.3
388
Normal
0.3
278
Normal
0.3
864
Normal
0.3
574
Normal
0.2
135
Tumor
0.2
558
Normal
0.2
394
Normal
0.2
228
Normal
0.2
444
Normal
0.2
1046
Normal
0.2
286
Normal
0.2
862
Normal
0.2
428
Normal
0.2
396
Normal
0.2
664
Normal
0.2
698
Normal
0.2
361
Tumor
0.2
114
Normal
0.2
918
Normal
0.2
195
Tumor
0.2
824
Normal
0.2
214
Normal
0.2
384
Normal
0.2
722
Normal
0.2
1026
Normal
0.2
136
Normal
0.2
1016
Normal
0.2
866
Normal
0.2
341
Tumor
0.2
424
Normal
0.2
462
Normal
0.2
746
Normal
0.2
642
Normal
0.2
366
Normal
0.2
1014
Normal
0.2
284
Normal
0.2
724
Normal
0.2
745
Tumor
0.2
327
Tumor
0.2
567
Tumor
0.2
778
Normal
0.2
426
Normal
0.2
912
Normal
0.2
858
Normal
0.2
964
Normal
0.2
958
Normal
0.2
354
Normal
0.2
672
Normal
0.2
695
Tumor
0.2
1032
Normal
0.2
737
Tumor
0.2
392
Normal
0.2
976
Normal
0.2
123
Tumor
0.2
132
Normal
0.2
882
Normal
0.2
477
Tumor
0.2
358
Normal
0.2
192
Normal
0.2
874
Normal
0.2
138
Normal
0.2
448
Normal
0.2
113
Tumor
0.2
534
Normal
0.2
432
Normal
0.2
422
Normal
0.2
926
Normal
0.2
262
Normal
0.2
814
Normal
0.2
868
Normal
0.2
497
Tumor
0.2
352
Normal
0.2
627
Tumor
0.2
852
Normal
0.2
186
Normal
0.2
451
Tumor
0.2
968
Normal
0.2
662
Normal
0.1
545
Tumor
0.1
145
Tumor
0.1
311
Tumor
0.1
865
Tumor
0.1
277
Tumor
0.1
982
Normal
0.1
482
Normal
0.1
413
Tumor
0.1
978
Normal
0.1
455
Tumor
0.1
267
Tumor
0.1
1044
Normal
0.1
533
Tumor
0.1
328
Normal
0.1
537
Tumor
0.1
557
Tumor
0.1
391
Tumor
0.1
353
Tumor
0.1
412
Normal
0.1
148
Normal
0.1
671
Tumor
0.1
938
Normal
0.1
416
Normal
0.1
914
Normal
0.1
1042
Normal
0.1
955
Tumor
0.1
546
Normal
0.1
433
Tumor
0.1
818
Normal
0.1
364
Normal
0.1
816
Normal
0.1
817
Tumor
0.1
191
Tumor
0.1
126
Normal
0.1
563
Tumor
0.1
878
Normal
0.1
714
Normal
0.1
395
Tumor
0.1
635
Tumor
0.1
232
Normal
0.1
484
Normal
0.1
777
Tumor
0.1
272
Normal
0.1
944
Normal
0.1
141
Tumor
0.1
187
Tumor
0.1
434
Normal
0.1
142
Normal
0.1
386
Normal
0.1
474
Normal
0.1
696
Normal
0.1
956
Normal
0.1
344
Normal
0.1
1025
Tumor
0.1
342
Normal
0.1
1021
Tumor
0.1
526
Normal
0.1
1022
Normal
0.1
297
Tumor
0.1
615
Tumor
0.1
421
Tumor
0.1
365
Tumor
0.1
268
Normal
0.1
1043
Tumor
0.1
257
Tumor
0.1
527
Tumor
0.1
471
Tumor
0.1
172
Normal
0.1
813
Tumor
0.1
162
Normal
0.0
1028
Normal
0.0
952
Normal
0.0
863
Tumor
0.0
447
Tumor
0.0
951
Tumor
0.0
954
Normal
0.0
171
Tumor
0.0
467
Tumor
0.0
224
Normal
0.0
554
Normal
0.0
461
Tumor
0.0
494
Normal
0.0
744
Normal
0.0
686
Normal
0.0
473
Tumor
0.0
383
Tumor
0.0
463
Tumor
0.0
124
Normal
0.0
393
Tumor
0.0
427
Tumor
0.0
713
Tumor
0.0
716
Normal
0.0
213
Tumor
0.0
481
Tumor
0.0
387
Tumor
0.0
1015
Tumor
0.0
984
Normal
0.0
953
Tumor
0.0
147
Tumor
0.0
472
Normal
0.0
221
Tumor
0.0
884
Normal
0.0
851
Tumor
0.0
161
Tumor
0.0
465
Tumor
0.0
924
Normal
0.0
188
Normal
0.0
943
Tumor
0.0
411
Tumor
0.0
966
Normal
0.0
721
Tumor
0.0
922
Normal
0.0
261
Tumor
0.0
957
Tumor
0.0
1027
Tumor
0.0
873
Tumor
0.0
916
Normal
0.0
488
Normal
0.0
1041
Tumor
0.0
385
Tumor
0.0
755
Tumor
0.0
357
Tumor
0.0
915
Tumor
0.0
131
Tumor
0.0
785
Tumor
-0.1
313
Tumor
-0.1
211
Tumor
-0.1
857
Tumor
-0.1
212
Normal
-0.1
535
Tumor
-0.1
517
Tumor
-0.1
514
Normal
-0.1
283
Tumor
-0.1
538
Normal
-0.1
487
Tumor
-0.1
815
Tumor
-0.1
921
Tumor
-0.1
231
Tumor
-0.1
1045
Tumor
-0.1
923
Tumor
-0.1
867
Tumor
-0.1
663
Tumor
-0.1
423
Tumor
-0.1
977
Tumor
-0.1
647
Tumor
-0.1
823
Tumor
-0.1
861
Tumor
-0.1
913
Tumor
-0.1
523
Tumor
-0.1
665
Tumor
-0.1
351
Tumor
-0.1
975
Tumor
-0.1
343
Tumor
-0.1
478
Normal
-0.1
877
Tumor
-0.1
981
Tumor
-0.1
536
Normal
-0.1
425
Tumor
-0.1
493
Tumor
-0.1
697
Tumor
-0.1
127
Tumor
-0.1
355
Tumor
-0.2
641
Tumor
-0.2
883
Tumor
-0.2
363
Tumor
-0.2
415
Tumor
-0.2
516
Normal
-0.2
911
Tumor
-0.2
185
Tumor
-0.2
573
Tumor
-0.2
498
Normal
-0.2
271
Tumor
-0.2
513
Tumor
-0.2
553
Tumor
-0.2
685
Tumor
-0.2
881
Tumor
-0.2
715
Tumor
-0.2
483
Tumor
-0.2
917
Tumor
-0.2
435
Tumor
-0.3
1031
Tumor
-0.3
375
Tumor
-0.3
525
Tumor
-0.3
492
Normal
-0.3
125
Tumor
-0.3
431
Tumor
-0.3
524
Normal
-0.4
963
Tumor
-0.4
925
Tumor
-0.5
491
Tumor
-0.5
227
Tumor
-0.5
741
Tumor
-0.6
1013
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
