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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ST13 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
94.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
240.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
217.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
216.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
215.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
214.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
209.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
206.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
204.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
201.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
199.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
191.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
191.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
185.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
185.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
185.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
180.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
180.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
179.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
177.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
175.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
173.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
170.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
168.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
167.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
167.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
165.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
164.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
163.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
162.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
160.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
160.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
157.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
156.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
155.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
153.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
152.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
150.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
148.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
148.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
147.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
146.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
146.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
145.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
145.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
144.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
143.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
143.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
142.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
141.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
141.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
140.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
139.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
139.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
138.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
138.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
137.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
134.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
133.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
133.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
131.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
130.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
130.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
129.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
128.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
128.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
127.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
127.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
127.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
126.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
126.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
125.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
124.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
124.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
124.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
123.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
123.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
123.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
122.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
122.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
121.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
121.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
121.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
120.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
119.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
119.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
119.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
119.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
119.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
119.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
118.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
117.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
117.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
116.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
116.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
116.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
115.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
114.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
112.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
112.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
112.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
111.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
111.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
111.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
111.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
111.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
111.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
110.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
109.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
109.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
109.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
108.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
107.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
107.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
107.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
107.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
106.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
106.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
106.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
106.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
106.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
105.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
105.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
104.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
104.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
104.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
104.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
104.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
104.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
103.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
102.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
102.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
102.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
102.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
102.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
102.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
102.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
101.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
100.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
100.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
100.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
99.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
99.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
98.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
98.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
98.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
98.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
98.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
98.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
97.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
97.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
96.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
96.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
95.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
95.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
95.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
95.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
94.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
94.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
94.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
93.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
93.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
93.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
93.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
93.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
93.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
93.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
93.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
93.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
93.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
92.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
92.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
92.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
92.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
92.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
92.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
90.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
90.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
90.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
89.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
89.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
89.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
89.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
88.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
88.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
88.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
87.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
87.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
86.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
85.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
85.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
85.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
85.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
85.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
85.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
84.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
84.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
83.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
82.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
82.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
82.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
81.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
81.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
81.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
80.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
80.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
80.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
80.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
80.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
79.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
79.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
79.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
78.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
78.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
78.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
78.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
78.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
78.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
77.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
77.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
77.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
76.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
76.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
76.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
76.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
76.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
76.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
75.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
75.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
75.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
75.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
74.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
74.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
74.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
74.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
74.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
74.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
73.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
73.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
72.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
72.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
72.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
71.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
71.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
71.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
71.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
70.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
70.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
70.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
70.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
69.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
69.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
69.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
69.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
67.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
66.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
66.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
66.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
66.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
66.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
66.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
66.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
66.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
66.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
65.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
65.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
65.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
64.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
64.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
64.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
64.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
64.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
63.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
63.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
63.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
63.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
63.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
63.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
63.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
63.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
62.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
62.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
61.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
61.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
61.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
61.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
61.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
61.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
60.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
60.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
60.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
60.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
60.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
60.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
60.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
60.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
60.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
59.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
59.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
58.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
58.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
57.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
57.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
57.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
57.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
56.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
56.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
55.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
55.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
54.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
54.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
54.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
54.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
53.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
53.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
52.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
52.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
52.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
52.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
52.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
51.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
51.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
51.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
51.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
51.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
49.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
49.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
48.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
47.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
46.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
46.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
46.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
46.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
46.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
45.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
44.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
44.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
44.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
43.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
43.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
43.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
43.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
42.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
42.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
42.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
40.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
39.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
39.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
39.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
37.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
37.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
36.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
36.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
35.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
35.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
34.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
34.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
32.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
28.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
15.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ST13 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
82.3
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
204.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
197.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
175.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
166.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
151.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
149.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
144.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
142.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
142.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
140.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
139.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
139.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
138.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
135.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
131.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
130.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
130.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
129.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
128.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
128.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
126.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
126.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
125.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
124.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
124.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
124.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
123.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
123.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
121.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
119.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
118.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
117.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
115.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
114.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
114.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
114.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
114.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
113.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
113.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
111.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
111.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
109.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
109.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
108.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
107.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
106.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
106.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
105.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
104.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
104.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
104.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
104.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
103.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
101.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
101.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
100.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
100.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
100.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
100.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
99.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
99.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
98.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
98.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
97.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
97.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
97.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
96.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
93.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
91.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
91.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
91.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
91.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
90.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
89.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
89.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
88.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
88.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
88.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
88.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
88.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
87.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
87.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
87.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
87.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
87.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
86.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
86.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
86.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
86.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
86.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
86.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
85.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
85.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
85.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
85.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
84.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
84.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
84.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
84.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
84.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
83.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
82.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
82.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
82.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
82.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
82.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
82.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
81.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
81.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
81.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
81.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
80.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
80.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
80.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
80.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
80.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
80.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
79.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
78.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
78.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
78.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
78.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
77.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
77.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
76.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
76.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
76.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
76.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
75.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
75.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
73.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
73.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
73.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
73.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
72.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
72.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
72.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
71.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
71.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
71.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
70.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
70.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
70.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
70.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
70.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
69.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
69.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
68.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
68.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
68.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
68.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
68.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
68.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
67.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
66.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
66.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
65.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
65.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
65.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
64.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
64.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
64.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
64.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
63.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
63.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
63.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
62.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
61.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
61.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
61.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
60.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
60.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
60.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
60.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
60.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
59.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
58.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
58.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
58.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
57.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
57.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
56.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
56.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
56.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
55.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
55.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
55.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
55.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
54.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
54.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
54.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
53.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
53.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
52.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
52.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
52.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
52.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
51.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
51.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
51.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
51.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
51.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
50.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
48.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
47.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
47.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
47.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
46.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
44.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
43.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
42.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
42.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
41.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
41.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
41.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
40.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
39.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
38.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
38.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
37.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
37.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
37.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
36.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
36.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
33.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
30.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
341
Tumor
1.1
513
Tumor
0.8
965
Tumor
0.8
331
Tumor
0.8
487
Tumor
0.8
313
Tumor
0.8
571
Tumor
0.7
1027
Tumor
0.7
131
Tumor
0.7
537
Tumor
0.7
951
Tumor
0.7
925
Tumor
0.7
743
Tumor
0.6
517
Tumor
0.6
435
Tumor
0.6
443
Tumor
0.6
112
Tumor
0.6
745
Tumor
0.6
1045
Tumor
0.6
863
Tumor
0.6
147
Tumor
0.6
477
Tumor
0.5
567
Tumor
0.5
445
Tumor
0.5
921
Tumor
0.5
1043
Tumor
0.5
483
Tumor
0.5
647
Tumor
0.5
953
Tumor
0.5
873
Tumor
0.4
127
Tumor
0.4
685
Tumor
0.4
123
Tumor
0.4
727
Tumor
0.4
938
Normal
0.4
746
Normal
0.4
695
Tumor
0.4
1021
Tumor
0.4
912
Normal
0.4
977
Tumor
0.4
911
Tumor
0.4
277
Tumor
0.4
488
Normal
0.4
533
Tumor
0.4
957
Tumor
0.4
698
Normal
0.3
1026
Normal
0.3
983
Tumor
0.3
714
Normal
0.3
472
Normal
0.3
482
Normal
0.3
527
Tumor
0.3
937
Tumor
0.3
722
Normal
0.3
161
Tumor
0.3
1014
Normal
0.3
627
Tumor
0.3
777
Tumor
0.2
471
Tumor
0.2
231
Tumor
0.2
523
Tumor
0.2
546
Normal
0.2
534
Normal
0.2
518
Normal
0.2
1032
Normal
0.2
283
Tumor
0.2
1031
Tumor
0.2
865
Tumor
0.2
525
Tumor
0.2
342
Normal
0.2
723
Tumor
0.2
367
Tumor
0.2
926
Normal
0.2
171
Tumor
0.2
697
Tumor
0.2
922
Normal
0.2
635
Tumor
0.2
1022
Normal
0.2
982
Normal
0.2
915
Tumor
0.2
412
Normal
0.2
448
Normal
0.2
261
Tumor
0.1
815
Tumor
0.1
686
Normal
0.1
484
Normal
0.1
916
Normal
0.1
648
Normal
0.1
883
Tumor
0.1
391
Tumor
0.1
361
Tumor
0.1
515
Tumor
0.1
882
Normal
0.1
958
Normal
0.1
628
Normal
0.1
778
Normal
0.1
514
Normal
0.1
257
Tumor
0.1
884
Normal
0.1
744
Normal
0.1
715
Tumor
0.1
824
Normal
0.1
553
Tumor
0.1
363
Tumor
0.1
954
Normal
0.1
528
Normal
0.1
617
Tumor
0.1
1025
Tumor
0.1
818
Normal
0.1
1041
Tumor
0.1
878
Normal
0.1
113
Tumor
0.1
223
Tumor
0.1
478
Normal
0.1
966
Normal
0.1
981
Tumor
0.1
641
Tumor
0.0
494
Normal
0.0
364
Normal
0.0
756
Normal
0.0
221
Tumor
0.0
425
Tumor
0.0
952
Normal
0.0
298
Normal
0.0
858
Normal
0.0
968
Normal
0.0
721
Tumor
0.0
142
Normal
0.0
328
Normal
0.0
1046
Normal
0.0
356
Normal
0.0
663
Tumor
0.0
554
Normal
0.0
114
Normal
0.0
297
Tumor
0.0
696
Normal
0.0
716
Normal
0.0
1044
Normal
0.0
473
Tumor
0.0
493
Tumor
0.0
964
Normal
0.0
436
Normal
0.0
877
Tumor
0.0
572
Normal
0.0
616
Normal
0.0
355
Tumor
0.0
956
Normal
0.0
196
Normal
0.0
785
Tumor
0.0
666
Normal
0.0
1013
Tumor
0.0
728
Normal
0.0
427
Tumor
0.0
665
Tumor
0.0
866
Normal
0.0
352
Normal
0.0
975
Tumor
0.0
357
Tumor
0.0
978
Normal
0.0
924
Normal
0.0
128
Normal
0.0
185
Tumor
0.0
923
Tumor
0.0
786
Normal
0.0
228
Normal
0.0
141
Tumor
0.0
862
Normal
0.0
955
Tumor
-0.1
162
Normal
-0.1
984
Normal
-0.1
463
Tumor
-0.1
385
Tumor
-0.1
111
Normal
-0.1
1015
Tumor
-0.1
332
Normal
-0.1
976
Normal
-0.1
456
Normal
-0.1
314
Normal
-0.1
344
Normal
-0.1
421
Tumor
-0.1
465
Tumor
-0.1
724
Normal
-0.1
394
Normal
-0.1
426
Normal
-0.1
146
Normal
-0.1
415
Tumor
-0.1
867
Tumor
-0.1
742
Normal
-0.1
464
Normal
-0.1
737
Tumor
-0.1
433
Tumor
-0.1
738
Normal
-0.1
498
Normal
-0.1
278
Normal
-0.1
351
Tumor
-0.1
874
Normal
-0.1
358
Normal
-0.1
526
Normal
-0.1
462
Normal
-0.1
376
Normal
-0.1
918
Normal
-0.1
568
Normal
-0.1
851
Tumor
-0.1
636
Normal
-0.1
466
Normal
-0.1
913
Tumor
-0.1
558
Normal
-0.1
538
Normal
-0.1
286
Normal
-0.1
661
Tumor
-0.1
423
Tumor
-0.1
222
Normal
-0.1
864
Normal
-0.2
186
Normal
-0.2
124
Normal
-0.2
285
Tumor
-0.2
132
Normal
-0.2
327
Tumor
-0.2
816
Normal
-0.2
618
Normal
-0.2
258
Normal
-0.2
1028
Normal
-0.2
943
Tumor
-0.2
664
Normal
-0.2
218
Normal
-0.2
564
Normal
-0.2
516
Normal
-0.2
817
Tumor
-0.2
967
Tumor
-0.2
1016
Normal
-0.2
524
Normal
-0.2
271
Tumor
-0.2
138
Normal
-0.2
416
Normal
-0.2
428
Normal
-0.2
563
Tumor
-0.2
446
Normal
-0.2
615
Tumor
-0.2
536
Normal
-0.2
411
Tumor
-0.2
545
Tumor
-0.2
284
Normal
-0.2
432
Normal
-0.2
944
Normal
-0.2
452
Normal
-0.2
267
Tumor
-0.2
1042
Normal
-0.2
451
Tumor
-0.2
137
Tumor
-0.2
354
Normal
-0.2
573
Tumor
-0.2
474
Normal
-0.2
148
Normal
-0.2
392
Normal
-0.2
852
Normal
-0.2
217
Tumor
-0.2
823
Tumor
-0.2
671
Tumor
-0.3
642
Normal
-0.3
447
Tumor
-0.3
497
Tumor
-0.3
386
Normal
-0.3
224
Normal
-0.3
461
Tumor
-0.3
492
Normal
-0.3
755
Tumor
-0.3
232
Normal
-0.3
212
Normal
-0.3
868
Normal
-0.3
136
Normal
-0.3
366
Normal
-0.3
424
Normal
-0.3
312
Normal
-0.3
455
Tumor
-0.3
414
Normal
-0.3
145
Tumor
-0.3
422
Normal
-0.3
172
Normal
-0.3
672
Normal
-0.3
963
Tumor
-0.3
914
Normal
-0.3
135
Tumor
-0.4
227
Tumor
-0.4
481
Tumor
-0.4
535
Tumor
-0.4
262
Normal
-0.4
395
Tumor
-0.4
396
Normal
-0.4
574
Normal
-0.4
662
Normal
-0.4
393
Tumor
-0.4
214
Normal
-0.4
353
Tumor
-0.4
311
Tumor
-0.4
557
Tumor
-0.4
413
Tumor
-0.4
192
Normal
-0.4
468
Normal
-0.4
195
Tumor
-0.4
384
Normal
-0.5
388
Normal
-0.5
368
Normal
-0.5
213
Tumor
-0.5
383
Tumor
-0.5
387
Tumor
-0.5
444
Normal
-0.5
491
Tumor
-0.5
713
Tumor
-0.5
272
Normal
-0.5
126
Normal
-0.5
362
Normal
-0.5
434
Normal
-0.5
191
Tumor
-0.5
365
Tumor
-0.5
188
Normal
-0.5
268
Normal
-0.5
857
Tumor
-0.5
881
Tumor
-0.6
814
Normal
-0.6
187
Tumor
-0.6
375
Tumor
-0.6
917
Tumor
-0.6
813
Tumor
-0.6
431
Tumor
-0.7
343
Tumor
-0.7
861
Tumor
-0.7
211
Tumor
-0.8
125
Tumor
-0.8
741
Tumor
-0.9
467
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
