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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFT27 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
72.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
62.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
59.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
49.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
49.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
47.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
47.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
46.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
43.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
42.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
41.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
41.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
40.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
39.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
39.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
39.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
38.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
38.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
36.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
36.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
35.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
35.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
35.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
35.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
34.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
34.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
34.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
33.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
33.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
33.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
33.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
33.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
31.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
31.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
31.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
30.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
30.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
30.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
29.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
28.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
28.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
28.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
27.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
27.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
27.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
26.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
26.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
25.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
25.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
24.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
24.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
23.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
22.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
22.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
21.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
21.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
21.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
21.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
18.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
17.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFT27 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.2
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
99.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
63.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
45.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
44.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
44.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
42.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
40.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
39.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
39.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
39.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
38.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
37.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
35.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
32.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
32.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
31.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
31.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
30.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
30.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
29.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
28.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
28.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
28.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
26.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
25.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
22.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
22.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
527
Tumor
1.1
341
Tumor
0.9
911
Tumor
0.9
647
Tumor
0.9
865
Tumor
0.9
523
Tumor
0.9
685
Tumor
0.9
965
Tumor
0.8
1027
Tumor
0.8
953
Tumor
0.8
957
Tumor
0.8
571
Tumor
0.7
223
Tumor
0.7
481
Tumor
0.7
913
Tumor
0.7
743
Tumor
0.7
477
Tumor
0.7
515
Tumor
0.6
724
Normal
0.6
981
Tumor
0.6
123
Tumor
0.6
967
Tumor
0.6
445
Tumor
0.6
1015
Tumor
0.6
357
Tumor
0.6
777
Tumor
0.6
567
Tumor
0.5
487
Tumor
0.5
493
Tumor
0.5
473
Tumor
0.5
1021
Tumor
0.5
443
Tumor
0.5
695
Tumor
0.5
1043
Tumor
0.4
363
Tumor
0.4
867
Tumor
0.4
1045
Tumor
0.4
755
Tumor
0.4
977
Tumor
0.4
393
Tumor
0.4
813
Tumor
0.4
465
Tumor
0.4
1041
Tumor
0.4
617
Tumor
0.4
983
Tumor
0.4
857
Tumor
0.4
355
Tumor
0.4
923
Tumor
0.3
513
Tumor
0.3
261
Tumor
0.3
1026
Normal
0.3
171
Tumor
0.3
745
Tumor
0.3
537
Tumor
0.3
937
Tumor
0.3
563
Tumor
0.3
353
Tumor
0.3
915
Tumor
0.3
415
Tumor
0.3
545
Tumor
0.3
1022
Normal
0.3
615
Tumor
0.3
665
Tumor
0.3
391
Tumor
0.3
861
Tumor
0.3
727
Tumor
0.2
554
Normal
0.2
411
Tumor
0.2
924
Normal
0.2
975
Tumor
0.2
267
Tumor
0.2
746
Normal
0.2
533
Tumor
0.2
715
Tumor
0.2
141
Tumor
0.2
737
Tumor
0.2
497
Tumor
0.2
955
Tumor
0.2
723
Tumor
0.2
387
Tumor
0.2
482
Normal
0.1
557
Tumor
0.1
952
Normal
0.1
285
Tumor
0.1
113
Tumor
0.1
921
Tumor
0.1
546
Normal
0.1
738
Normal
0.1
131
Tumor
0.1
342
Normal
0.1
925
Tumor
0.1
713
Tumor
0.1
1016
Normal
0.1
1042
Normal
0.1
484
Normal
0.1
858
Normal
0.1
697
Tumor
0.1
137
Tumor
0.1
534
Normal
0.1
742
Normal
0.1
778
Normal
0.1
553
Tumor
0.1
451
Tumor
0.1
111
Normal
0.1
518
Normal
0.1
433
Tumor
0.1
756
Normal
0.1
461
Tumor
0.1
878
Normal
0.1
1031
Tumor
0.1
728
Normal
0.1
271
Tumor
0.1
641
Tumor
0.1
128
Normal
0.1
471
Tumor
0.1
435
Tumor
0.0
966
Normal
0.0
222
Normal
0.0
698
Normal
0.0
472
Normal
0.0
311
Tumor
0.0
572
Normal
0.0
516
Normal
0.0
616
Normal
0.0
142
Normal
0.0
663
Tumor
0.0
456
Normal
0.0
514
Normal
0.0
416
Normal
0.0
488
Normal
0.0
358
Normal
0.0
356
Normal
0.0
425
Tumor
0.0
426
Normal
0.0
221
Tumor
0.0
814
Normal
0.0
351
Tumor
0.0
436
Normal
0.0
716
Normal
0.0
538
Normal
0.0
231
Tumor
0.0
951
Tumor
0.0
918
Normal
0.0
462
Normal
0.0
474
Normal
0.0
364
Normal
0.0
917
Tumor
0.0
146
Normal
0.0
984
Normal
0.0
283
Tumor
0.0
136
Normal
0.0
818
Normal
0.0
982
Normal
0.0
455
Tumor
0.0
956
Normal
0.0
862
Normal
0.0
1044
Normal
0.0
112
Tumor
0.0
628
Normal
-0.1
714
Normal
-0.1
212
Normal
-0.1
662
Normal
-0.1
463
Tumor
-0.1
494
Normal
-0.1
568
Normal
-0.1
882
Normal
-0.1
912
Normal
-0.1
744
Normal
-0.1
138
Normal
-0.1
525
Tumor
-0.1
132
Normal
-0.1
964
Normal
-0.1
938
Normal
-0.1
824
Normal
-0.1
412
Normal
-0.1
922
Normal
-0.1
186
Normal
-0.1
785
Tumor
-0.1
218
Normal
-0.1
696
Normal
-0.1
666
Normal
-0.1
926
Normal
-0.1
526
Normal
-0.1
664
Normal
-0.1
958
Normal
-0.1
492
Normal
-0.1
286
Normal
-0.1
877
Tumor
-0.1
916
Normal
-0.1
228
Normal
-0.1
866
Normal
-0.1
618
Normal
-0.1
564
Normal
-0.1
686
Normal
-0.1
447
Tumor
-0.1
386
Normal
-0.1
642
Normal
-0.1
367
Tumor
-0.1
978
Normal
-0.1
943
Tumor
-0.1
448
Normal
-0.1
1032
Normal
-0.1
636
Normal
-0.1
272
Normal
-0.1
816
Normal
-0.1
478
Normal
-0.1
648
Normal
-0.1
1025
Tumor
-0.1
558
Normal
-0.1
331
Tumor
-0.1
528
Normal
-0.1
1046
Normal
-0.1
466
Normal
-0.1
362
Normal
-0.1
446
Normal
-0.1
968
Normal
-0.1
524
Normal
-0.1
786
Normal
-0.1
262
Normal
-0.1
874
Normal
-0.1
114
Normal
-0.1
162
Normal
-0.1
297
Tumor
-0.2
815
Tumor
-0.2
277
Tumor
-0.2
914
Normal
-0.2
124
Normal
-0.2
881
Tumor
-0.2
1028
Normal
-0.2
354
Normal
-0.2
366
Normal
-0.2
741
Tumor
-0.2
394
Normal
-0.2
328
Normal
-0.2
258
Normal
-0.2
298
Normal
-0.2
145
Tumor
-0.2
344
Normal
-0.2
388
Normal
-0.2
332
Normal
-0.2
672
Normal
-0.2
864
Normal
-0.2
187
Tumor
-0.2
823
Tumor
-0.2
817
Tumor
-0.2
361
Tumor
-0.2
452
Normal
-0.2
196
Normal
-0.2
214
Normal
-0.2
396
Normal
-0.2
392
Normal
-0.2
944
Normal
-0.2
395
Tumor
-0.2
976
Normal
-0.2
383
Tumor
-0.2
217
Tumor
-0.2
483
Tumor
-0.2
868
Normal
-0.2
852
Normal
-0.2
413
Tumor
-0.2
284
Normal
-0.2
517
Tumor
-0.2
464
Normal
-0.2
536
Normal
-0.2
376
Normal
-0.3
722
Normal
-0.3
498
Normal
-0.3
195
Tumor
-0.3
232
Normal
-0.3
213
Tumor
-0.3
422
Normal
-0.3
635
Tumor
-0.3
314
Normal
-0.3
884
Normal
-0.3
352
Normal
-0.3
671
Tumor
-0.3
574
Normal
-0.3
468
Normal
-0.3
365
Tumor
-0.3
434
Normal
-0.3
148
Normal
-0.3
313
Tumor
-0.3
188
Normal
-0.3
1014
Normal
-0.3
191
Tumor
-0.3
467
Tumor
-0.3
172
Normal
-0.4
368
Normal
-0.4
126
Normal
-0.4
432
Normal
-0.4
185
Tumor
-0.4
257
Tumor
-0.4
423
Tumor
-0.4
224
Normal
-0.4
268
Normal
-0.4
428
Normal
-0.4
278
Normal
-0.4
424
Normal
-0.4
963
Tumor
-0.4
954
Normal
-0.4
444
Normal
-0.4
721
Tumor
-0.5
312
Normal
-0.5
883
Tumor
-0.5
427
Tumor
-0.5
627
Tumor
-0.5
421
Tumor
-0.5
863
Tumor
-0.5
227
Tumor
-0.5
414
Normal
-0.5
384
Normal
-0.5
192
Normal
-0.5
211
Tumor
-0.5
343
Tumor
-0.6
161
Tumor
-0.6
135
Tumor
-0.6
147
Tumor
-0.6
431
Tumor
-0.7
125
Tumor
-0.7
535
Tumor
-0.7
375
Tumor
-0.7
127
Tumor
-0.8
491
Tumor
-0.8
385
Tumor
-1.0
873
Tumor
-1.0
1013
Tumor
-1.1
573
Tumor
-1.2
661
Tumor
-1.4
327
Tumor
-1.5
851
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
