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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FOXRED2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
48.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
47.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
39.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
36.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
33.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
33.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
29.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
27.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
22.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FOXRED2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
231
Samples
Sample
Description
TPM
DO23511
0 years, female, NA, stage:3, dead, 180 days
31.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
28.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
23.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
641
Tumor
1.0
171
Tumor
0.9
356
Normal
0.8
221
Tumor
0.7
257
Tumor
0.7
132
Normal
0.7
1041
Tumor
0.6
1027
Tumor
0.6
493
Tumor
0.6
723
Tumor
0.6
136
Normal
0.6
328
Normal
0.6
343
Tumor
0.5
416
Normal
0.5
953
Tumor
0.5
546
Normal
0.5
738
Normal
0.5
742
Normal
0.5
912
Normal
0.5
616
Normal
0.5
618
Normal
0.5
412
Normal
0.5
642
Normal
0.5
627
Tumor
0.5
231
Tumor
0.5
473
Tumor
0.5
554
Normal
0.5
525
Tumor
0.5
125
Tumor
0.5
138
Normal
0.5
914
Normal
0.5
185
Tumor
0.4
388
Normal
0.4
636
Normal
0.4
628
Normal
0.4
147
Tumor
0.4
451
Tumor
0.4
553
Tumor
0.4
863
Tumor
0.4
727
Tumor
0.4
513
Tumor
0.4
497
Tumor
0.4
814
Normal
0.4
862
Normal
0.4
744
Normal
0.4
686
Normal
0.4
392
Normal
0.4
868
Normal
0.4
696
Normal
0.4
146
Normal
0.4
534
Normal
0.3
977
Tumor
0.3
857
Tumor
0.3
813
Tumor
0.3
954
Normal
0.3
756
Normal
0.3
364
Normal
0.3
714
Normal
0.3
283
Tumor
0.3
261
Tumor
0.3
342
Normal
0.3
367
Tumor
0.3
277
Tumor
0.3
394
Normal
0.3
142
Normal
0.3
492
Normal
0.3
137
Tumor
0.3
538
Normal
0.3
192
Normal
0.3
528
Normal
0.3
312
Normal
0.3
332
Normal
0.3
786
Normal
0.3
746
Normal
0.3
484
Normal
0.3
557
Tumor
0.3
984
Normal
0.3
722
Normal
0.3
716
Normal
0.3
741
Tumor
0.3
911
Tumor
0.3
341
Tumor
0.3
278
Normal
0.2
195
Tumor
0.2
721
Tumor
0.2
331
Tumor
0.2
462
Normal
0.2
913
Tumor
0.2
313
Tumor
0.2
468
Normal
0.2
952
Normal
0.2
615
Tumor
0.2
938
Normal
0.2
145
Tumor
0.2
131
Tumor
0.2
666
Normal
0.2
864
Normal
0.2
354
Normal
0.2
314
Normal
0.2
435
Tumor
0.2
883
Tumor
0.2
664
Normal
0.2
358
Normal
0.2
286
Normal
0.2
823
Tumor
0.2
461
Tumor
0.2
524
Normal
0.2
467
Tumor
0.2
755
Tumor
0.2
494
Normal
0.2
396
Normal
0.2
213
Tumor
0.1
285
Tumor
0.1
884
Normal
0.1
878
Normal
0.1
483
Tumor
0.1
135
Tumor
0.1
778
Normal
0.1
352
Normal
0.1
298
Normal
0.1
526
Normal
0.1
858
Normal
0.1
361
Tumor
0.1
1044
Normal
0.1
1045
Tumor
0.1
432
Normal
0.1
327
Tumor
0.1
672
Normal
0.1
212
Normal
0.1
223
Tumor
0.1
488
Normal
0.1
196
Normal
0.1
745
Tumor
0.1
635
Tumor
0.1
112
Tumor
0.1
436
Normal
0.1
882
Normal
0.1
187
Tumor
0.1
975
Tumor
0.1
271
Tumor
0.1
217
Tumor
0.1
963
Tumor
0.1
498
Normal
0.1
384
Normal
0.1
976
Normal
0.1
516
Normal
0.1
172
Normal
0.1
514
Normal
0.1
1043
Tumor
0.1
474
Normal
0.1
466
Normal
0.1
214
Normal
0.1
648
Normal
0.1
224
Normal
0.1
114
Normal
0.1
368
Normal
0.1
386
Normal
0.1
434
Normal
0.0
824
Normal
0.0
865
Tumor
0.0
978
Normal
0.0
1016
Normal
0.0
162
Normal
0.0
617
Tumor
0.0
518
Normal
0.0
141
Tumor
0.0
463
Tumor
0.0
715
Tumor
0.0
351
Tumor
0.0
662
Normal
0.0
443
Tumor
0.0
967
Tumor
0.0
297
Tumor
0.0
127
Tumor
0.0
391
Tumor
0.0
956
Normal
0.0
1014
Normal
0.0
258
Normal
0.0
728
Normal
0.0
877
Tumor
0.0
698
Normal
0.0
852
Normal
0.0
446
Normal
0.0
445
Tumor
0.0
487
Tumor
0.0
478
Normal
0.0
344
Normal
0.0
211
Tumor
0.0
563
Tumor
0.0
111
Normal
0.0
465
Tumor
0.0
785
Tumor
0.0
148
Normal
0.0
567
Tumor
0.0
376
Normal
0.0
777
Tumor
0.0
661
Tumor
-0.1
186
Normal
-0.1
482
Normal
-0.1
222
Normal
-0.1
966
Normal
-0.1
572
Normal
-0.1
515
Tumor
-0.1
818
Normal
-0.1
517
Tumor
-0.1
866
Normal
-0.1
191
Tumor
-0.1
944
Normal
-0.1
943
Tumor
-0.1
965
Tumor
-0.1
713
Tumor
-0.1
957
Tumor
-0.1
1015
Tumor
-0.1
268
Normal
-0.1
861
Tumor
-0.1
564
Normal
-0.1
968
Normal
-0.1
272
Normal
-0.1
481
Tumor
-0.1
491
Tumor
-0.1
415
Tumor
-0.1
981
Tumor
-0.1
982
Normal
-0.1
262
Normal
-0.1
817
Tumor
-0.1
375
Tumor
-0.1
574
Normal
-0.1
362
Normal
-0.1
695
Tumor
-0.1
366
Normal
-0.1
433
Tumor
-0.1
815
Tumor
-0.1
1021
Tumor
-0.1
1026
Normal
-0.1
448
Normal
-0.1
395
Tumor
-0.1
188
Normal
-0.2
383
Tumor
-0.2
387
Tumor
-0.2
671
Tumor
-0.2
685
Tumor
-0.2
964
Normal
-0.2
128
Normal
-0.2
816
Normal
-0.2
113
Tumor
-0.2
955
Tumor
-0.2
357
Tumor
-0.2
353
Tumor
-0.2
227
Tumor
-0.2
232
Normal
-0.2
523
Tumor
-0.2
452
Normal
-0.2
471
Tumor
-0.2
267
Tumor
-0.2
456
Normal
-0.2
363
Tumor
-0.2
571
Tumor
-0.2
1046
Normal
-0.2
365
Tumor
-0.2
568
Normal
-0.2
663
Tumor
-0.2
558
Normal
-0.2
937
Tumor
-0.2
573
Tumor
-0.2
311
Tumor
-0.3
126
Normal
-0.3
284
Normal
-0.3
472
Normal
-0.3
123
Tumor
-0.3
455
Tumor
-0.3
1022
Normal
-0.3
411
Tumor
-0.3
958
Normal
-0.3
477
Tumor
-0.3
743
Tumor
-0.3
881
Tumor
-0.3
1032
Normal
-0.3
665
Tumor
-0.3
851
Tumor
-0.3
951
Tumor
-0.3
447
Tumor
-0.3
867
Tumor
-0.3
444
Normal
-0.3
1028
Normal
-0.3
647
Tumor
-0.3
124
Normal
-0.3
1042
Normal
-0.3
464
Normal
-0.4
218
Normal
-0.4
431
Tumor
-0.4
724
Normal
-0.4
527
Tumor
-0.4
874
Normal
-0.4
161
Tumor
-0.4
537
Tumor
-0.4
983
Tumor
-0.5
545
Tumor
-0.5
385
Tumor
-0.5
393
Tumor
-0.5
228
Normal
-0.6
1031
Tumor
-0.6
355
Tumor
-0.7
873
Tumor
-0.7
533
Tumor
-0.7
536
Normal
-0.7
737
Tumor
-0.7
697
Tumor
-0.8
1013
Tumor
-0.8
535
Tumor
-1.0
1025
Tumor
-1.2
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
