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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSPO is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
81.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
530.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
495.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
434.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
403.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
402.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
389.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
386.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
385.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
381.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
351.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
348.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
342.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
333.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
324.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
309.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
309.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
305.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
289.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
267.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
244.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
241.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
236.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
211.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
209.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
202.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
200.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
197.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
191.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
187.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
182.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
181.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
180.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
179.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
179.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
178.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
175.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
170.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
164.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
160.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
157.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
155.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
154.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
152.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
150.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
147.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
146.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
144.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
144.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
144.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
141.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
141.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
141.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
139.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
139.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
139.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
139.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
139.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
136.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
134.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
134.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
131.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
130.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
130.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
127.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
126.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
125.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
125.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
123.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
119.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
118.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
117.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
115.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
107.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
107.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
107.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
106.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
106.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
105.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
104.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
104.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
103.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
103.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
101.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
101.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
100.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
100.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
99.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
98.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
97.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
96.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
95.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
94.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
94.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
94.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
93.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
92.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
90.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
90.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
90.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
90.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
89.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
88.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
88.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
87.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
86.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
86.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
85.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
85.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
85.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
84.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
83.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
83.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
83.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
81.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
81.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
80.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
80.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
79.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
79.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
78.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
78.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
77.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
77.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
76.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
76.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
75.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
75.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
75.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
75.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
74.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
74.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
74.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
73.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
72.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
72.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
71.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
71.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
70.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
70.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
70.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
69.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
69.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
69.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
67.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
67.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
66.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
66.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
66.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
65.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
65.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
64.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
64.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
63.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
63.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
63.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
63.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
63.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
62.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
61.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
61.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
59.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
58.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
58.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
58.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
58.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
57.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
57.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
56.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
56.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
56.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
56.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
56.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
56.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
56.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
55.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
55.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
55.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
55.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
54.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
54.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
54.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
54.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
54.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
53.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
53.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
53.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
53.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
52.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
52.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
52.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
52.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
52.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
52.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
51.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
51.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
51.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
51.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
51.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
50.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
50.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
50.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
50.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
50.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
50.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
49.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
49.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
49.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
49.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
48.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
48.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
48.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
47.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
47.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
47.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
46.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
45.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
44.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
43.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
43.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
43.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
42.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
42.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
42.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
42.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
42.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
42.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
42.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
41.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
41.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
41.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
41.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
41.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
40.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
40.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
40.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
40.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
39.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
39.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
38.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
38.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
37.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
37.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
37.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
36.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
36.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
36.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
36.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
35.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
35.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
35.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
34.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
34.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
34.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
33.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
33.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
33.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
32.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
32.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
32.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
31.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
31.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
31.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
31.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
31.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
31.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
31.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
31.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
30.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
30.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
30.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
29.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
28.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
28.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
27.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
27.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
26.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
25.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
21.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
21.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
21.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
21.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
21.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSPO is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
49.1
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
356.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
346.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
285.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
273.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
241.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
239.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
234.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
223.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
216.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
211.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
195.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
184.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
183.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
166.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
166.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
157.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
154.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
149.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
139.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
136.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
130.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
124.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
117.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
117.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
116.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
114.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
113.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
110.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
105.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
102.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
97.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
97.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
92.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
91.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
76.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
75.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
73.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
72.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
71.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
71.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
69.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
67.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
67.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
67.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
64.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
64.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
63.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
63.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
62.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
62.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
62.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
62.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
61.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
61.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
61.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
56.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
55.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
54.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
53.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
53.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
52.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
52.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
52.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
50.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
49.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
49.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
48.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
48.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
48.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
47.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
46.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
46.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
45.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
45.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
44.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
42.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
42.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
41.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
41.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
40.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
40.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
40.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
39.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
38.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
38.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
37.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
37.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
37.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
37.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
37.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
37.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
37.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
37.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
36.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
35.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
35.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
35.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
35.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
35.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
35.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
34.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
32.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
32.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
32.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
31.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
31.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
30.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
30.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
29.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
28.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
27.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
26.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
26.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
25.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
311
Tumor
1.9
557
Tumor
1.0
135
Tumor
1.0
451
Tumor
1.0
267
Tumor
0.9
231
Tumor
0.9
171
Tumor
0.9
461
Tumor
0.8
663
Tumor
0.8
627
Tumor
0.8
573
Tumor
0.8
1041
Tumor
0.7
137
Tumor
0.7
343
Tumor
0.7
383
Tumor
0.7
915
Tumor
0.7
395
Tumor
0.7
427
Tumor
0.7
361
Tumor
0.6
124
Normal
0.6
452
Normal
0.6
423
Tumor
0.6
465
Tumor
0.6
823
Tumor
0.6
814
Normal
0.6
911
Tumor
0.6
883
Tumor
0.6
195
Tumor
0.6
1015
Tumor
0.6
185
Tumor
0.6
384
Normal
0.5
421
Tumor
0.5
392
Normal
0.5
125
Tumor
0.5
567
Tumor
0.5
813
Tumor
0.5
393
Tumor
0.5
213
Tumor
0.5
388
Normal
0.5
443
Tumor
0.5
192
Normal
0.5
685
Tumor
0.5
857
Tumor
0.4
111
Normal
0.4
434
Normal
0.4
422
Normal
0.4
196
Normal
0.4
425
Tumor
0.4
262
Normal
0.4
232
Normal
0.4
268
Normal
0.4
636
Normal
0.4
298
Normal
0.4
191
Tumor
0.4
357
Tumor
0.4
114
Normal
0.4
574
Normal
0.4
332
Normal
0.4
312
Normal
0.4
342
Normal
0.3
186
Normal
0.3
127
Tumor
0.3
376
Normal
0.3
467
Tumor
0.3
426
Normal
0.3
188
Normal
0.3
358
Normal
0.3
385
Tumor
0.3
661
Tumor
0.3
917
Tumor
0.3
278
Normal
0.3
816
Normal
0.3
564
Normal
0.3
272
Normal
0.3
214
Normal
0.3
354
Normal
0.3
362
Normal
0.3
568
Normal
0.3
742
Normal
0.3
394
Normal
0.3
662
Normal
0.3
222
Normal
0.3
444
Normal
0.3
648
Normal
0.3
572
Normal
0.3
112
Tumor
0.3
368
Normal
0.3
283
Tumor
0.3
386
Normal
0.3
468
Normal
0.3
224
Normal
0.3
724
Normal
0.3
286
Normal
0.2
126
Normal
0.2
864
Normal
0.2
436
Normal
0.2
258
Normal
0.2
446
Normal
0.2
1027
Tumor
0.2
261
Tumor
0.2
865
Tumor
0.2
618
Normal
0.2
366
Normal
0.2
218
Normal
0.2
424
Normal
0.2
852
Normal
0.2
414
Normal
0.2
161
Tumor
0.2
217
Tumor
0.2
142
Normal
0.2
223
Tumor
0.2
664
Normal
0.2
863
Tumor
0.2
715
Tumor
0.2
558
Normal
0.2
228
Normal
0.2
257
Tumor
0.2
432
Normal
0.2
456
Normal
0.2
641
Tumor
0.2
786
Normal
0.2
352
Normal
0.2
146
Normal
0.2
912
Normal
0.2
666
Normal
0.2
462
Normal
0.1
314
Normal
0.1
466
Normal
0.1
128
Normal
0.1
141
Tumor
0.1
344
Normal
0.1
628
Normal
0.1
138
Normal
0.1
284
Normal
0.1
445
Tumor
0.1
824
Normal
0.1
563
Tumor
0.1
396
Normal
0.1
162
Normal
0.1
123
Tumor
0.1
145
Tumor
0.1
672
Normal
0.1
744
Normal
0.1
464
Normal
0.1
818
Normal
0.1
868
Normal
0.1
874
Normal
0.1
867
Tumor
0.1
642
Normal
0.0
862
Normal
0.0
882
Normal
0.0
881
Tumor
0.0
817
Tumor
0.0
671
Tumor
0.0
187
Tumor
0.0
428
Normal
0.0
525
Tumor
0.0
132
Normal
0.0
375
Tumor
0.0
878
Normal
0.0
778
Normal
0.0
746
Normal
0.0
297
Tumor
0.0
982
Normal
0.0
858
Normal
0.0
616
Normal
0.0
861
Tumor
0.0
686
Normal
0.0
1016
Normal
0.0
1044
Normal
0.0
391
Tumor
0.0
212
Normal
0.0
914
Normal
0.0
884
Normal
0.0
148
Normal
0.0
172
Normal
0.0
483
Tumor
-0.1
455
Tumor
-0.1
482
Normal
-0.1
723
Tumor
-0.1
477
Tumor
-0.1
147
Tumor
-0.1
447
Tumor
-0.1
491
Tumor
-0.1
738
Normal
-0.1
943
Tumor
-0.1
785
Tumor
-0.1
722
Normal
-0.1
328
Normal
-0.1
463
Tumor
-0.1
1046
Normal
-0.1
433
Tumor
-0.1
474
Normal
-0.1
877
Tumor
-0.1
136
Normal
-0.1
756
Normal
-0.2
1014
Normal
-0.2
313
Tumor
-0.2
977
Tumor
-0.2
981
Tumor
-0.2
918
Normal
-0.2
448
Normal
-0.2
713
Tumor
-0.2
571
Tumor
-0.2
271
Tumor
-0.2
113
Tumor
-0.2
478
Normal
-0.2
716
Normal
-0.2
1026
Normal
-0.2
416
Normal
-0.2
493
Tumor
-0.2
978
Normal
-0.2
1028
Normal
-0.2
851
Tumor
-0.2
528
Normal
-0.2
916
Normal
-0.2
536
Normal
-0.2
364
Normal
-0.2
526
Normal
-0.2
615
Tumor
-0.2
698
Normal
-0.2
922
Normal
-0.2
472
Normal
-0.3
952
Normal
-0.3
221
Tumor
-0.3
926
Normal
-0.3
211
Tumor
-0.3
1022
Normal
-0.3
984
Normal
-0.3
331
Tumor
-0.3
365
Tumor
-0.3
925
Tumor
-0.3
356
Normal
-0.3
538
Normal
-0.3
387
Tumor
-0.3
866
Normal
-0.3
954
Normal
-0.3
494
Normal
-0.3
956
Normal
-0.3
412
Normal
-0.3
367
Tumor
-0.3
1021
Tumor
-0.4
546
Normal
-0.4
741
Tumor
-0.4
227
Tumor
-0.4
524
Normal
-0.4
873
Tumor
-0.4
1032
Normal
-0.4
697
Tumor
-0.4
966
Normal
-0.4
696
Normal
-0.4
924
Normal
-0.4
755
Tumor
-0.4
938
Normal
-0.4
815
Tumor
-0.4
534
Normal
-0.4
351
Tumor
-0.4
554
Normal
-0.4
953
Tumor
-0.4
958
Normal
-0.4
413
Tumor
-0.4
964
Normal
-0.4
665
Tumor
-0.4
514
Normal
-0.5
545
Tumor
-0.5
976
Normal
-0.5
975
Tumor
-0.5
728
Normal
-0.5
721
Tumor
-0.5
435
Tumor
-0.5
515
Tumor
-0.5
944
Normal
-0.5
277
Tumor
-0.5
492
Normal
-0.5
968
Normal
-0.5
497
Tumor
-0.5
353
Tumor
-0.5
473
Tumor
-0.5
518
Normal
-0.6
1042
Normal
-0.6
363
Tumor
-0.6
488
Normal
-0.6
471
Tumor
-0.6
498
Normal
-0.6
617
Tumor
-0.6
415
Tumor
-0.6
516
Normal
-0.6
484
Normal
-0.6
431
Tumor
-0.7
341
Tumor
-0.7
745
Tumor
-0.7
285
Tumor
-0.7
535
Tumor
-0.7
921
Tumor
-0.7
714
Normal
-0.7
737
Tumor
-0.7
1045
Tumor
-0.7
777
Tumor
-0.8
1013
Tumor
-0.8
983
Tumor
-0.8
537
Tumor
-0.9
527
Tumor
-0.9
963
Tumor
-0.9
913
Tumor
-0.9
553
Tumor
-0.9
131
Tumor
-0.9
327
Tumor
-0.9
1043
Tumor
-1.0
951
Tumor
-1.0
1031
Tumor
-1.0
727
Tumor
-1.0
957
Tumor
-1.0
923
Tumor
-1.0
635
Tumor
-1.0
411
Tumor
-1.0
647
Tumor
-1.1
355
Tumor
-1.1
967
Tumor
-1.1
1025
Tumor
-1.2
513
Tumor
-1.2
937
Tumor
-1.2
533
Tumor
-1.3
955
Tumor
-1.3
481
Tumor
-1.3
523
Tumor
-1.4
517
Tumor
-1.6
965
Tumor
-1.7
743
Tumor
-1.7
487
Tumor
-2.0
695
Tumor
-2.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
