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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARSA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
133.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
128.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
117.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
116.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
109.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
99.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
99.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
94.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
93.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
91.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
89.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
85.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
84.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
81.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
80.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
80.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
80.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
77.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
76.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
74.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
74.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
73.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
73.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
72.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
72.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
71.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
70.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
70.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
67.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
67.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
67.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
66.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
66.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
66.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
66.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
66.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
65.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
65.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
61.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
60.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
60.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
60.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
59.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
57.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
56.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
54.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
54.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
54.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
53.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
53.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
53.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
53.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
53.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
53.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
52.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
52.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
52.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
51.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
51.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
51.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
51.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
51.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
49.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
49.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
49.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
49.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
49.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
49.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
49.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
48.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
48.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
48.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
48.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
47.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
47.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
47.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
47.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
46.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
46.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
45.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
45.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
45.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
45.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
45.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
45.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
45.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
44.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
44.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
44.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
44.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
44.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
44.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
43.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
43.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
43.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
43.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
42.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
42.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
42.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
42.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
42.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
42.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
41.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
41.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
41.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
41.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
41.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
41.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
41.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
41.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
41.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
40.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
39.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
39.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
39.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
39.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
39.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
39.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
39.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
39.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
38.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
38.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
38.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
38.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
38.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
37.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
37.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
36.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
36.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
36.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
36.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
36.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
36.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
36.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
36.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
36.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
36.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
36.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
36.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
35.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
35.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
35.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
35.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
35.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
35.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
35.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
35.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
34.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
34.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
34.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
34.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
33.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
33.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
33.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
33.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
33.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
33.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
33.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
32.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
32.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
32.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
32.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
32.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
32.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
32.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
32.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
32.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
31.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
31.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
31.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
31.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
30.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
30.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
30.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
30.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
30.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
30.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
30.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
29.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
29.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
29.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
29.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
29.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
29.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
29.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
29.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
29.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
29.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
29.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
28.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
28.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
27.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
27.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
27.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
27.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
27.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
27.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
26.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
26.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
26.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
25.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
25.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
25.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
25.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
24.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
24.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
23.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
23.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
23.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
23.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
22.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
20.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
20.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
19.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARSA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.4
Number of samples
231
Samples
Sample
Description
TPM
DO23529
0 years, male, NA, stage:4, alive, 930 days
88.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
48.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
48.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
41.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
41.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
36.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
36.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
36.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
35.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
29.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
28.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
27.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
24.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
22.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
715
Tumor
1.5
685
Tumor
1.2
1041
Tumor
1.1
911
Tumor
1.1
451
Tumor
1.1
913
Tumor
1.1
137
Tumor
0.9
112
Tumor
0.9
915
Tumor
0.8
466
Normal
0.8
557
Tumor
0.8
421
Tumor
0.7
172
Normal
0.7
481
Tumor
0.7
435
Tumor
0.6
873
Tumor
0.6
127
Tumor
0.6
443
Tumor
0.6
1045
Tumor
0.6
267
Tumor
0.6
223
Tumor
0.6
636
Normal
0.6
261
Tumor
0.6
728
Normal
0.5
641
Tumor
0.5
212
Normal
0.5
925
Tumor
0.5
395
Tumor
0.5
1028
Normal
0.5
564
Normal
0.5
628
Normal
0.5
745
Tumor
0.5
128
Normal
0.5
455
Tumor
0.5
665
Tumor
0.5
278
Normal
0.4
162
Normal
0.4
714
Normal
0.4
132
Normal
0.4
171
Tumor
0.4
482
Normal
0.4
473
Tumor
0.4
221
Tumor
0.4
352
Normal
0.4
723
Tumor
0.4
394
Normal
0.4
1046
Normal
0.4
367
Tumor
0.4
344
Normal
0.4
356
Normal
0.4
1015
Tumor
0.4
387
Tumor
0.4
722
Normal
0.4
392
Normal
0.4
616
Normal
0.3
258
Normal
0.3
568
Normal
0.3
944
Normal
0.3
686
Normal
0.3
884
Normal
0.3
195
Tumor
0.3
414
Normal
0.3
388
Normal
0.3
883
Tumor
0.3
142
Normal
0.3
424
Normal
0.3
525
Tumor
0.3
341
Tumor
0.3
755
Tumor
0.3
468
Normal
0.3
857
Tumor
0.3
314
Normal
0.3
648
Normal
0.3
363
Tumor
0.3
866
Normal
0.3
615
Tumor
0.3
362
Normal
0.3
311
Tumor
0.3
358
Normal
0.3
513
Tumor
0.3
558
Normal
0.3
376
Normal
0.3
426
Normal
0.3
484
Normal
0.3
196
Normal
0.3
284
Normal
0.3
141
Tumor
0.2
922
Normal
0.2
415
Tumor
0.2
868
Normal
0.2
433
Tumor
0.2
432
Normal
0.2
148
Normal
0.2
647
Tumor
0.2
465
Tumor
0.2
396
Normal
0.2
136
Normal
0.2
514
Normal
0.2
111
Normal
0.2
474
Normal
0.2
572
Normal
0.2
1042
Normal
0.2
357
Tumor
0.2
642
Normal
0.2
553
Tumor
0.2
462
Normal
0.2
534
Normal
0.2
464
Normal
0.2
126
Normal
0.2
984
Normal
0.2
487
Tumor
0.2
964
Normal
0.2
191
Tumor
0.2
937
Tumor
0.2
858
Normal
0.2
445
Tumor
0.2
138
Normal
0.2
222
Normal
0.2
114
Normal
0.2
696
Normal
0.1
312
Normal
0.1
926
Normal
0.1
353
Tumor
0.1
327
Tumor
0.1
461
Tumor
0.1
867
Tumor
0.1
386
Normal
0.1
1014
Normal
0.1
268
Normal
0.1
446
Normal
0.1
958
Normal
0.1
976
Normal
0.1
188
Normal
0.1
618
Normal
0.1
428
Normal
0.1
515
Tumor
0.1
342
Normal
0.1
914
Normal
0.1
978
Normal
0.1
918
Normal
0.1
528
Normal
0.1
716
Normal
0.1
1022
Normal
0.1
368
Normal
0.1
786
Normal
0.1
366
Normal
0.1
518
Normal
0.1
228
Normal
0.1
444
Normal
0.1
214
Normal
0.1
272
Normal
0.1
232
Normal
0.1
1016
Normal
0.1
571
Tumor
0.1
912
Normal
0.0
472
Normal
0.0
328
Normal
0.0
436
Normal
0.0
818
Normal
0.0
257
Tumor
0.0
262
Normal
0.0
938
Normal
0.0
968
Normal
0.0
494
Normal
0.0
1032
Normal
0.0
756
Normal
0.0
434
Normal
0.0
954
Normal
0.0
492
Normal
0.0
982
Normal
0.0
963
Tumor
0.0
423
Tumor
0.0
574
Normal
0.0
955
Tumor
0.0
526
Normal
0.0
664
Normal
0.0
746
Normal
0.0
456
Normal
0.0
224
Normal
0.0
516
Normal
0.0
422
Normal
0.0
881
Tumor
0.0
1027
Tumor
0.0
874
Normal
0.0
416
Normal
0.0
916
Normal
0.0
384
Normal
0.0
383
Tumor
0.0
364
Normal
0.0
967
Tumor
0.0
298
Normal
-0.1
713
Tumor
-0.1
878
Normal
-0.1
332
Normal
-0.1
365
Tumor
-0.1
452
Normal
-0.1
627
Tumor
-0.1
231
Tumor
-0.1
921
Tumor
-0.1
218
Normal
-0.1
113
Tumor
-0.1
467
Tumor
-0.1
524
Normal
-0.1
192
Normal
-0.1
361
Tumor
-0.1
852
Normal
-0.1
662
Normal
-0.1
286
Normal
-0.1
744
Normal
-0.1
666
Normal
-0.1
471
Tumor
-0.1
966
Normal
-0.2
882
Normal
-0.2
1026
Normal
-0.2
785
Tumor
-0.2
385
Tumor
-0.2
981
Tumor
-0.2
816
Normal
-0.2
187
Tumor
-0.2
738
Normal
-0.2
563
Tumor
-0.2
554
Normal
-0.2
488
Normal
-0.2
427
Tumor
-0.2
493
Tumor
-0.2
742
Normal
-0.2
635
Tumor
-0.2
697
Tumor
-0.2
924
Normal
-0.2
617
Tumor
-0.2
354
Normal
-0.2
412
Normal
-0.3
331
Tumor
-0.3
862
Normal
-0.3
917
Tumor
-0.3
724
Normal
-0.3
343
Tumor
-0.3
698
Normal
-0.3
217
Tumor
-0.3
147
Tumor
-0.3
1044
Normal
-0.3
546
Normal
-0.3
851
Tumor
-0.3
313
Tumor
-0.3
721
Tumor
-0.3
975
Tumor
-0.3
483
Tumor
-0.3
953
Tumor
-0.3
777
Tumor
-0.3
498
Normal
-0.3
535
Tumor
-0.4
663
Tumor
-0.4
952
Normal
-0.4
393
Tumor
-0.4
695
Tumor
-0.4
943
Tumor
-0.4
861
Tumor
-0.4
956
Normal
-0.4
124
Normal
-0.4
864
Normal
-0.4
533
Tumor
-0.4
727
Tumor
-0.4
778
Normal
-0.4
477
Tumor
-0.4
478
Normal
-0.5
161
Tumor
-0.5
425
Tumor
-0.5
817
Tumor
-0.5
865
Tumor
-0.5
977
Tumor
-0.5
672
Normal
-0.5
186
Normal
-0.5
824
Normal
-0.5
135
Tumor
-0.5
125
Tumor
-0.5
391
Tumor
-0.6
227
Tumor
-0.6
527
Tumor
-0.6
297
Tumor
-0.6
573
Tumor
-0.6
983
Tumor
-0.6
448
Normal
-0.6
491
Tumor
-0.6
538
Normal
-0.6
545
Tumor
-0.6
185
Tumor
-0.6
431
Tumor
-0.6
463
Tumor
-0.6
1021
Tumor
-0.7
536
Normal
-0.7
1043
Tumor
-0.7
671
Tumor
-0.7
814
Normal
-0.7
277
Tumor
-0.7
877
Tumor
-0.7
351
Tumor
-0.7
413
Tumor
-0.8
146
Normal
-0.8
213
Tumor
-0.8
271
Tumor
-0.8
1031
Tumor
-0.8
957
Tumor
-0.8
375
Tumor
-0.8
145
Tumor
-0.8
497
Tumor
-0.8
283
Tumor
-0.8
923
Tumor
-0.9
523
Tumor
-0.9
815
Tumor
-0.9
355
Tumor
-0.9
285
Tumor
-0.9
411
Tumor
-1.0
823
Tumor
-1.0
211
Tumor
-1.0
1013
Tumor
-1.0
813
Tumor
-1.0
737
Tumor
-1.0
661
Tumor
-1.1
517
Tumor
-1.1
965
Tumor
-1.1
447
Tumor
-1.1
1025
Tumor
-1.1
741
Tumor
-1.1
567
Tumor
-1.2
863
Tumor
-1.2
951
Tumor
-1.2
123
Tumor
-1.2
537
Tumor
-1.5
743
Tumor
-1.6
131
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
