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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MCAT is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
39.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
29.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
29.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
27.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
27.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
25.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
23.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
23.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
21.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
21.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MCAT is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.7
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
2.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.1
465
Tumor
1.0
231
Tumor
0.9
1041
Tumor
0.8
341
Tumor
0.7
171
Tumor
0.7
981
Tumor
0.6
915
Tumor
0.6
967
Tumor
0.6
127
Tumor
0.5
128
Normal
0.5
937
Tumor
0.5
513
Tumor
0.5
883
Tumor
0.5
477
Tumor
0.5
443
Tumor
0.5
571
Tumor
0.4
695
Tumor
0.4
627
Tumor
0.4
361
Tumor
0.4
313
Tumor
0.4
314
Normal
0.4
145
Tumor
0.4
451
Tumor
0.4
557
Tumor
0.4
436
Normal
0.4
388
Normal
0.4
483
Tumor
0.4
132
Normal
0.4
186
Normal
0.4
567
Tumor
0.4
452
Normal
0.3
278
Normal
0.3
357
Tumor
0.3
358
Normal
0.3
232
Normal
0.3
525
Tumor
0.3
332
Normal
0.3
112
Tumor
0.3
393
Tumor
0.3
426
Normal
0.3
423
Tumor
0.3
746
Normal
0.3
331
Tumor
0.3
911
Tumor
0.3
342
Normal
0.3
394
Normal
0.3
432
Normal
0.3
138
Normal
0.3
261
Tumor
0.3
172
Normal
0.3
537
Tumor
0.3
142
Normal
0.3
414
Normal
0.3
636
Normal
0.3
435
Tumor
0.3
354
Normal
0.3
1014
Normal
0.3
367
Tumor
0.3
411
Tumor
0.3
568
Normal
0.2
743
Tumor
0.2
446
Normal
0.2
1046
Normal
0.2
618
Normal
0.2
665
Tumor
0.2
356
Normal
0.2
267
Tumor
0.2
272
Normal
0.2
698
Normal
0.2
162
Normal
0.2
376
Normal
0.2
873
Tumor
0.2
912
Normal
0.2
391
Tumor
0.2
113
Tumor
0.2
298
Normal
0.2
756
Normal
0.2
616
Normal
0.2
136
Normal
0.2
786
Normal
0.2
484
Normal
0.2
487
Tumor
0.2
526
Normal
0.2
364
Normal
0.2
957
Tumor
0.2
185
Tumor
0.2
258
Normal
0.2
344
Normal
0.2
1032
Normal
0.2
466
Normal
0.1
564
Normal
0.1
352
Normal
0.1
944
Normal
0.1
137
Tumor
0.1
392
Normal
0.1
954
Normal
0.1
926
Normal
0.1
111
Normal
0.1
648
Normal
0.1
951
Tumor
0.1
546
Normal
0.1
196
Normal
0.1
715
Tumor
0.1
1022
Normal
0.1
114
Normal
0.1
696
Normal
0.1
363
Tumor
0.1
922
Normal
0.1
124
Normal
0.1
755
Tumor
0.1
497
Tumor
0.1
868
Normal
0.1
685
Tumor
0.1
464
Normal
0.1
123
Tumor
0.1
427
Tumor
0.1
462
Normal
0.1
978
Normal
0.1
914
Normal
0.1
744
Normal
0.1
148
Normal
0.1
366
Normal
0.1
396
Normal
0.1
965
Tumor
0.1
416
Normal
0.1
573
Tumor
0.1
214
Normal
0.1
862
Normal
0.1
554
Normal
0.1
286
Normal
0.1
412
Normal
0.1
488
Normal
0.1
262
Normal
0.1
424
Normal
0.1
558
Normal
0.1
218
Normal
0.1
1026
Normal
0.1
563
Tumor
0.1
448
Normal
0.0
938
Normal
0.0
222
Normal
0.0
514
Normal
0.0
328
Normal
0.0
1028
Normal
0.0
964
Normal
0.0
428
Normal
0.0
672
Normal
0.0
924
Normal
0.0
867
Tumor
0.0
874
Normal
0.0
362
Normal
0.0
445
Tumor
0.0
395
Tumor
0.0
866
Normal
0.0
864
Normal
0.0
647
Tumor
0.0
195
Tumor
0.0
1031
Tumor
0.0
473
Tumor
0.0
191
Tumor
0.0
574
Normal
0.0
918
Normal
0.0
713
Tumor
0.0
533
Tumor
0.0
572
Normal
0.0
1016
Normal
0.0
482
Normal
0.0
1021
Tumor
0.0
1042
Normal
0.0
534
Normal
0.0
368
Normal
0.0
952
Normal
0.0
327
Tumor
0.0
421
Tumor
0.0
982
Normal
0.0
386
Normal
0.0
494
Normal
0.0
778
Normal
0.0
433
Tumor
0.0
865
Tumor
0.0
722
Normal
0.0
615
Tumor
0.0
268
Normal
0.0
456
Normal
0.0
642
Normal
0.0
146
Normal
0.0
468
Normal
0.0
223
Tumor
0.0
188
Normal
0.0
955
Tumor
0.0
422
Normal
0.0
953
Tumor
0.0
956
Normal
0.0
1043
Tumor
0.0
518
Normal
0.0
858
Normal
0.0
228
Normal
-0.1
913
Tumor
-0.1
478
Normal
-0.1
984
Normal
-0.1
227
Tumor
-0.1
884
Normal
-0.1
686
Normal
-0.1
425
Tumor
-0.1
727
Tumor
-0.1
187
Tumor
-0.1
666
Normal
-0.1
217
Tumor
-0.1
444
Normal
-0.1
916
Normal
-0.1
434
Normal
-0.1
387
Tumor
-0.1
284
Normal
-0.1
538
Normal
-0.1
671
Tumor
-0.1
1045
Tumor
-0.1
535
Tumor
-0.1
385
Tumor
-0.1
474
Normal
-0.1
968
Normal
-0.1
628
Normal
-0.1
664
Normal
-0.1
1015
Tumor
-0.1
384
Normal
-0.1
976
Normal
-0.1
492
Normal
-0.1
126
Normal
-0.1
745
Tumor
-0.1
141
Tumor
-0.1
524
Normal
-0.1
958
Normal
-0.1
212
Normal
-0.1
738
Normal
-0.1
353
Tumor
-0.1
882
Normal
-0.1
224
Normal
-0.1
1013
Tumor
-0.1
923
Tumor
-0.1
878
Normal
-0.1
728
Normal
-0.1
516
Normal
-0.2
472
Normal
-0.2
528
Normal
-0.2
723
Tumor
-0.2
861
Tumor
-0.2
517
Tumor
-0.2
147
Tumor
-0.2
1027
Tumor
-0.2
461
Tumor
-0.2
192
Normal
-0.2
742
Normal
-0.2
662
Normal
-0.2
493
Tumor
-0.2
714
Normal
-0.2
351
Tumor
-0.2
297
Tumor
-0.2
481
Tumor
-0.2
257
Tumor
-0.2
966
Normal
-0.2
277
Tumor
-0.2
413
Tumor
-0.2
921
Tumor
-0.3
553
Tumor
-0.3
498
Normal
-0.3
221
Tumor
-0.3
135
Tumor
-0.3
697
Tumor
-0.3
724
Normal
-0.3
635
Tumor
-0.3
716
Normal
-0.3
355
Tumor
-0.3
824
Normal
-0.3
1044
Normal
-0.3
818
Normal
-0.3
663
Tumor
-0.3
365
Tumor
-0.3
491
Tumor
-0.3
131
Tumor
-0.3
877
Tumor
-0.3
816
Normal
-0.3
383
Tumor
-0.3
415
Tumor
-0.3
977
Tumor
-0.3
1025
Tumor
-0.3
213
Tumor
-0.3
851
Tumor
-0.3
312
Normal
-0.4
641
Tumor
-0.4
161
Tumor
-0.4
721
Tumor
-0.4
852
Normal
-0.4
447
Tumor
-0.4
527
Tumor
-0.4
917
Tumor
-0.4
785
Tumor
-0.4
471
Tumor
-0.4
741
Tumor
-0.4
823
Tumor
-0.4
777
Tumor
-0.5
343
Tumor
-0.5
943
Tumor
-0.5
815
Tumor
-0.5
523
Tumor
-0.5
431
Tumor
-0.5
536
Normal
-0.5
857
Tumor
-0.5
463
Tumor
-0.5
814
Normal
-0.5
467
Tumor
-0.5
975
Tumor
-0.5
455
Tumor
-0.5
983
Tumor
-0.5
271
Tumor
-0.5
863
Tumor
-0.6
375
Tumor
-0.6
285
Tumor
-0.6
737
Tumor
-0.6
661
Tumor
-0.6
963
Tumor
-0.6
515
Tumor
-0.7
617
Tumor
-0.7
813
Tumor
-0.7
311
Tumor
-0.7
881
Tumor
-0.7
211
Tumor
-0.7
545
Tumor
-0.7
125
Tumor
-0.8
283
Tumor
-0.8
817
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
