We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CHKB is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
3.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CHKB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.1
Number of samples
231
Samples
Sample
Description
TPM
DO50845
0 years, male, NA, stage:3, alive, 210 days
164.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
155.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
138.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
137.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
131.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
100.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
95.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
94.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
93.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
87.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
86.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
86.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
80.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
78.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
78.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
74.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
73.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
73.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
67.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
67.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
66.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
65.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
65.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
64.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
64.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
64.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
63.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
62.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
61.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
60.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
59.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
59.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
58.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
58.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
55.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
54.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
53.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
52.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
50.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
50.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
49.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
46.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
45.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
45.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
44.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
44.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
44.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
43.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
43.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
42.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
42.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
42.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
42.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
40.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
39.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
39.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
39.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
39.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
38.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
38.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
38.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
38.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
38.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
38.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
37.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
37.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
37.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
37.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
37.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
36.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
36.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
36.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
36.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
36.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
35.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
35.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
34.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
33.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
33.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
33.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
33.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
33.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
33.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
32.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
32.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
32.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
32.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
31.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
31.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
31.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
31.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
31.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
31.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
31.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
31.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
31.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
30.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
29.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
29.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
29.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
28.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
28.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
28.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
27.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
27.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
27.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
26.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
24.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
1.2
271
Tumor
1.1
635
Tumor
1.0
743
Tumor
0.9
492
Normal
0.8
672
Normal
0.8
494
Normal
0.8
952
Normal
0.7
536
Normal
0.7
272
Normal
0.7
463
Tumor
0.7
966
Normal
0.6
493
Tumor
0.6
737
Tumor
0.6
445
Tumor
0.6
366
Normal
0.6
1022
Normal
0.6
956
Normal
0.6
641
Tumor
0.5
862
Normal
0.5
268
Normal
0.5
917
Tumor
0.5
464
Normal
0.5
1031
Tumor
0.5
951
Tumor
0.5
756
Normal
0.5
738
Normal
0.5
186
Normal
0.5
518
Normal
0.5
984
Normal
0.5
415
Tumor
0.5
428
Normal
0.5
661
Tumor
0.5
535
Tumor
0.5
918
Normal
0.5
944
Normal
0.5
955
Tumor
0.5
147
Tumor
0.4
478
Normal
0.4
924
Normal
0.4
671
Tumor
0.4
221
Tumor
0.4
327
Tumor
0.4
416
Normal
0.4
262
Normal
0.4
146
Normal
0.4
864
Normal
0.4
722
Normal
0.4
311
Tumor
0.4
1032
Normal
0.4
472
Normal
0.4
716
Normal
0.4
283
Tumor
0.4
446
Normal
0.4
975
Tumor
0.4
516
Normal
0.4
498
Normal
0.4
1044
Normal
0.4
364
Normal
0.4
912
Normal
0.4
185
Tumor
0.4
363
Tumor
0.4
714
Normal
0.4
354
Normal
0.4
666
Normal
0.4
361
Tumor
0.3
664
Normal
0.3
1016
Normal
0.3
414
Normal
0.3
698
Normal
0.3
873
Tumor
0.3
212
Normal
0.3
192
Normal
0.3
435
Tumor
0.3
298
Normal
0.3
878
Normal
0.3
852
Normal
0.3
434
Normal
0.3
218
Normal
0.3
132
Normal
0.3
384
Normal
0.3
568
Normal
0.3
362
Normal
0.3
921
Tumor
0.3
481
Tumor
0.3
978
Normal
0.3
426
Normal
0.3
376
Normal
0.3
427
Tumor
0.3
424
Normal
0.3
396
Normal
0.2
214
Normal
0.2
1026
Normal
0.2
312
Normal
0.2
425
Tumor
0.2
816
Normal
0.2
452
Normal
0.2
188
Normal
0.2
642
Normal
0.2
517
Tumor
0.2
257
Tumor
0.2
616
Normal
0.2
126
Normal
0.2
778
Normal
0.2
662
Normal
0.2
217
Tumor
0.2
368
Normal
0.2
444
Normal
0.2
723
Tumor
0.2
546
Normal
0.2
297
Tumor
0.2
477
Tumor
0.2
564
Normal
0.2
648
Normal
0.2
911
Tumor
0.2
572
Normal
0.2
916
Normal
0.2
473
Tumor
0.2
514
Normal
0.2
432
Normal
0.2
721
Tumor
0.2
114
Normal
0.2
112
Tumor
0.2
713
Tumor
0.2
874
Normal
0.2
926
Normal
0.2
554
Normal
0.2
124
Normal
0.2
533
Tumor
0.2
422
Normal
0.2
574
Normal
0.1
958
Normal
0.1
456
Normal
0.1
278
Normal
0.1
742
Normal
0.1
413
Tumor
0.1
135
Tumor
0.1
558
Normal
0.1
728
Normal
0.1
817
Tumor
0.1
866
Normal
0.1
148
Normal
0.1
412
Normal
0.1
746
Normal
0.1
923
Tumor
0.1
491
Tumor
0.1
436
Normal
0.1
968
Normal
0.1
113
Tumor
0.1
222
Normal
0.1
744
Normal
0.1
331
Tumor
0.1
332
Normal
0.1
488
Normal
0.1
526
Normal
0.1
111
Normal
0.1
213
Tumor
0.1
191
Tumor
0.1
386
Normal
0.1
286
Normal
0.1
468
Normal
0.1
1046
Normal
0.1
553
Tumor
0.1
387
Tumor
0.1
482
Normal
0.1
786
Normal
0.1
211
Tumor
0.1
696
Normal
0.1
937
Tumor
0.1
884
Normal
0.1
715
Tumor
0.1
196
Normal
0.1
195
Tumor
0.1
448
Normal
0.0
128
Normal
0.0
484
Normal
0.0
131
Tumor
0.0
395
Tumor
0.0
187
Tumor
0.0
474
Normal
0.0
525
Tumor
0.0
356
Normal
0.0
388
Normal
0.0
138
Normal
0.0
877
Tumor
0.0
563
Tumor
0.0
451
Tumor
0.0
145
Tumor
0.0
1043
Tumor
0.0
954
Normal
0.0
727
Tumor
0.0
697
Tumor
0.0
385
Tumor
0.0
882
Normal
0.0
943
Tumor
0.0
686
Normal
0.0
1045
Tumor
0.0
394
Normal
0.0
352
Normal
0.0
524
Normal
0.0
1015
Tumor
0.0
232
Normal
0.0
824
Normal
0.0
284
Normal
0.0
258
Normal
0.0
314
Normal
0.0
365
Tumor
0.0
538
Normal
0.0
228
Normal
0.0
137
Tumor
0.0
277
Tumor
-0.1
455
Tumor
-0.1
938
Normal
-0.1
534
Normal
-0.1
1028
Normal
-0.1
466
Normal
-0.1
467
Tumor
-0.1
528
Normal
-0.1
922
Normal
-0.1
628
Normal
-0.1
172
Normal
-0.1
1025
Tumor
-0.1
964
Normal
-0.1
858
Normal
-0.1
367
Tumor
-0.1
443
Tumor
-0.1
328
Normal
-0.1
1021
Tumor
-0.1
982
Normal
-0.1
162
Normal
-0.1
383
Tumor
-0.1
421
Tumor
-0.1
136
Normal
-0.1
342
Normal
-0.1
963
Tumor
-0.1
755
Tumor
-0.1
267
Tumor
-0.1
861
Tumor
-0.1
125
Tumor
-0.1
392
Normal
-0.1
618
Normal
-0.1
868
Normal
-0.1
344
Normal
-0.1
423
Tumor
-0.1
1042
Normal
-0.1
447
Tumor
-0.1
665
Tumor
-0.2
261
Tumor
-0.2
224
Normal
-0.2
573
Tumor
-0.2
1014
Normal
-0.2
976
Normal
-0.2
818
Normal
-0.2
462
Normal
-0.2
823
Tumor
-0.2
636
Normal
-0.2
557
Tumor
-0.2
777
Tumor
-0.2
223
Tumor
-0.2
461
Tumor
-0.2
571
Tumor
-0.2
881
Tumor
-0.2
851
Tumor
-0.2
914
Normal
-0.2
814
Normal
-0.2
231
Tumor
-0.2
358
Normal
-0.2
433
Tumor
-0.2
983
Tumor
-0.2
142
Normal
-0.2
785
Tumor
-0.3
977
Tumor
-0.3
1027
Tumor
-0.3
617
Tumor
-0.3
487
Tumor
-0.3
745
Tumor
-0.3
161
Tumor
-0.3
965
Tumor
-0.3
615
Tumor
-0.3
513
Tumor
-0.3
813
Tumor
-0.3
343
Tumor
-0.3
545
Tumor
-0.3
127
Tumor
-0.3
857
Tumor
-0.3
567
Tumor
-0.3
913
Tumor
-0.4
724
Normal
-0.4
515
Tumor
-0.4
967
Tumor
-0.4
375
Tumor
-0.4
815
Tumor
-0.4
285
Tumor
-0.4
141
Tumor
-0.4
915
Tumor
-0.4
483
Tumor
-0.4
355
Tumor
-0.4
411
Tumor
-0.5
171
Tumor
-0.5
393
Tumor
-0.5
353
Tumor
-0.5
925
Tumor
-0.5
497
Tumor
-0.5
867
Tumor
-0.5
227
Tumor
-0.5
883
Tumor
-0.6
341
Tumor
-0.6
123
Tumor
-0.6
523
Tumor
-0.6
431
Tumor
-0.6
981
Tumor
-0.6
391
Tumor
-0.6
863
Tumor
-0.6
957
Tumor
-0.6
695
Tumor
-0.6
647
Tumor
-0.6
1041
Tumor
-0.7
465
Tumor
-0.7
313
Tumor
-0.7
663
Tumor
-0.7
685
Tumor
-0.7
357
Tumor
-0.7
527
Tumor
-0.7
351
Tumor
-0.8
627
Tumor
-0.8
865
Tumor
-0.9
537
Tumor
-0.9
953
Tumor
-1.1
741
Tumor
-1.1
1013
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
