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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP6R2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
113.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
112.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
110.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
109.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
107.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
104.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
103.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
102.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
99.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
97.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
97.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
96.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
96.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
94.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
94.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
92.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
92.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
91.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
91.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
85.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
83.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
83.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
82.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
81.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
80.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
80.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
80.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
80.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
79.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
76.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
75.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
74.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
74.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
74.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
73.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
73.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
72.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
72.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
72.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
72.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
72.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
71.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
71.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
71.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
71.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
71.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
70.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
70.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
70.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
70.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
70.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
69.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
68.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
67.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
67.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
67.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
67.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
66.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
66.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
66.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
66.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
66.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
66.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
65.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
65.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
65.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
65.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
65.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
64.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
64.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
64.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
64.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
64.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
63.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
63.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
63.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
62.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
62.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
61.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
61.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
61.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
61.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
60.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
60.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
60.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
59.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
59.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
59.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
58.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
58.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
58.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
58.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
58.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
57.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
57.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
56.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
56.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
56.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
56.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
55.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
55.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
55.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
54.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
54.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
54.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
54.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
54.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
54.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
54.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
54.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
54.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
53.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
53.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
53.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
53.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
53.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
52.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
52.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
52.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
52.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
52.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
51.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
51.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
51.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
51.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
51.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
51.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
51.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
51.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
51.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
51.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
51.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
51.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
50.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
50.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
49.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
49.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
49.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
49.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
49.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
49.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
49.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
48.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
48.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
48.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
48.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
48.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
48.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
48.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
48.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
48.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
47.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
47.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
47.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
47.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
47.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
47.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
47.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
47.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
47.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
46.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
46.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
46.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
45.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
45.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
45.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
44.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
44.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
44.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
44.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
44.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
44.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
43.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
43.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
43.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
43.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
43.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
43.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
43.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
43.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
43.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
42.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
42.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
42.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
41.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
41.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
41.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
41.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
41.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
41.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
41.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
41.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
40.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
40.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
40.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
40.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
40.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
40.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
40.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
40.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
39.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
39.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
39.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
39.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
39.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
39.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
39.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
38.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
38.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
38.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
38.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
38.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
38.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
37.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
37.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
37.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
37.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
37.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
37.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
37.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
37.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
37.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
37.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
36.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
36.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
35.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
35.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
35.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
35.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
35.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
35.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
35.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
35.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
35.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
35.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
34.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
34.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
34.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
34.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
33.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
33.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
33.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
33.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
33.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
32.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
32.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
32.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
32.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
32.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
32.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
31.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
31.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
31.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
31.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
30.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
30.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
30.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
30.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
30.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
30.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
30.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
30.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
29.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
29.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
29.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
29.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
28.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
28.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
28.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
28.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
27.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
27.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
27.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
26.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
26.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
25.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
25.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
24.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
24.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
22.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
22.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
21.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
17.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
15.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
14.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP6R2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.9
Number of samples
231
Samples
Sample
Description
TPM
DO23515
0 years, male, NA, stage:2, alive, 1230 days
74.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
69.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
67.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
65.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
65.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
65.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
65.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
64.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
63.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
63.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
59.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
59.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
58.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
58.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
56.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
56.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
56.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
56.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
56.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
56.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
54.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
54.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
53.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
52.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
51.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
51.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
50.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
50.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
50.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
49.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
48.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
48.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
48.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
47.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
47.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
47.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
46.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
45.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
45.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
45.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
45.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
45.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
44.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
44.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
44.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
42.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
42.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
41.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
41.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
41.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
41.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
40.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
39.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
39.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
38.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
38.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
38.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
38.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
38.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
37.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
37.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
37.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
37.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
37.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
36.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
36.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
36.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
36.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
36.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
36.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
36.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
35.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
35.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
35.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
34.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
34.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
34.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
33.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
33.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
33.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
33.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
33.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
33.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
33.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
32.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
32.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
32.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
32.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
32.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
32.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
31.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
31.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
31.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
30.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
30.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
30.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
29.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
29.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
29.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
29.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
29.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
28.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
27.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
26.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
25.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
25.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
24.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
23.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
18.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
815
Tumor
1.1
983
Tumor
0.9
445
Tumor
0.9
131
Tumor
0.8
743
Tumor
0.7
465
Tumor
0.7
277
Tumor
0.7
435
Tumor
0.7
1027
Tumor
0.7
425
Tumor
0.6
147
Tumor
0.6
1021
Tumor
0.5
443
Tumor
0.5
635
Tumor
0.5
921
Tumor
0.5
171
Tumor
0.5
745
Tumor
0.5
367
Tumor
0.5
746
Normal
0.5
285
Tumor
0.4
357
Tumor
0.4
487
Tumor
0.4
463
Tumor
0.4
223
Tumor
0.4
851
Tumor
0.4
331
Tumor
0.4
977
Tumor
0.4
554
Normal
0.4
426
Normal
0.4
744
Normal
0.4
452
Normal
0.4
413
Tumor
0.4
915
Tumor
0.4
298
Normal
0.4
341
Tumor
0.4
715
Tumor
0.4
376
Normal
0.4
981
Tumor
0.3
342
Normal
0.3
186
Normal
0.3
423
Tumor
0.3
967
Tumor
0.3
114
Normal
0.3
128
Normal
0.3
1031
Tumor
0.3
278
Normal
0.3
533
Tumor
0.3
742
Normal
0.3
271
Tumor
0.3
451
Tumor
0.3
618
Normal
0.3
545
Tumor
0.3
953
Tumor
0.3
332
Normal
0.3
314
Normal
0.3
124
Normal
0.3
777
Tumor
0.3
1043
Tumor
0.3
137
Tumor
0.3
412
Normal
0.3
393
Tumor
0.2
1014
Normal
0.2
955
Tumor
0.2
422
Normal
0.2
123
Tumor
0.2
878
Normal
0.2
912
Normal
0.2
132
Normal
0.2
546
Normal
0.2
436
Normal
0.2
471
Tumor
0.2
525
Tumor
0.2
196
Normal
0.2
358
Normal
0.2
913
Tumor
0.2
446
Normal
0.2
221
Tumor
0.2
391
Tumor
0.2
698
Normal
0.2
952
Normal
0.2
111
Normal
0.2
647
Tumor
0.2
392
Normal
0.2
553
Tumor
0.2
984
Normal
0.2
484
Normal
0.2
661
Tumor
0.2
258
Normal
0.2
477
Tumor
0.2
1041
Tumor
0.2
162
Normal
0.2
232
Normal
0.2
466
Normal
0.2
738
Normal
0.1
727
Tumor
0.1
222
Normal
0.1
344
Normal
0.1
267
Tumor
0.1
414
Normal
0.1
354
Normal
0.1
148
Normal
0.1
464
Normal
0.1
368
Normal
0.1
448
Normal
0.1
515
Tumor
0.1
648
Normal
0.1
313
Tumor
0.1
461
Tumor
0.1
113
Tumor
0.1
737
Tumor
0.1
662
Normal
0.1
1025
Tumor
0.1
964
Normal
0.1
982
Normal
0.1
456
Normal
0.1
925
Tumor
0.1
538
Normal
0.1
1016
Normal
0.1
312
Normal
0.1
261
Tumor
0.1
922
Normal
0.1
722
Normal
0.1
924
Normal
0.1
1046
Normal
0.1
363
Tumor
0.1
1026
Normal
0.1
214
Normal
0.1
388
Normal
0.1
257
Tumor
0.1
172
Normal
0.1
572
Normal
0.1
723
Tumor
0.1
362
Normal
0.1
136
Normal
0.1
534
Normal
0.1
474
Normal
0.1
356
Normal
0.1
394
Normal
0.1
138
Normal
0.1
568
Normal
0.1
627
Tumor
0.1
483
Tumor
0.1
433
Tumor
0.1
882
Normal
0.1
862
Normal
0.1
696
Normal
0.1
858
Normal
0.1
488
Normal
0.1
818
Normal
0.1
714
Normal
0.1
786
Normal
0.1
432
Normal
0.1
642
Normal
0.1
938
Normal
0.1
574
Normal
0.1
428
Normal
0.1
866
Normal
0.0
926
Normal
0.0
864
Normal
0.0
695
Tumor
0.0
665
Tumor
0.0
527
Tumor
0.0
666
Normal
0.0
523
Tumor
0.0
628
Normal
0.0
686
Normal
0.0
636
Normal
0.0
424
Normal
0.0
262
Normal
0.0
142
Normal
0.0
272
Normal
0.0
966
Normal
0.0
958
Normal
0.0
468
Normal
0.0
716
Normal
0.0
416
Normal
0.0
1022
Normal
0.0
286
Normal
0.0
778
Normal
0.0
127
Tumor
0.0
366
Normal
0.0
957
Tumor
0.0
824
Normal
0.0
944
Normal
0.0
664
Normal
0.0
685
Tumor
0.0
518
Normal
0.0
385
Tumor
0.0
482
Normal
0.0
951
Tumor
0.0
396
Normal
0.0
141
Tumor
0.0
528
Normal
0.0
976
Normal
0.0
785
Tumor
0.0
462
Normal
0.0
353
Tumor
0.0
756
Normal
0.0
1032
Normal
0.0
918
Normal
0.0
537
Tumor
0.0
228
Normal
0.0
911
Tumor
0.0
816
Normal
0.0
146
Normal
-0.1
914
Normal
-0.1
1028
Normal
-0.1
713
Tumor
-0.1
672
Normal
-0.1
571
Tumor
-0.1
526
Normal
-0.1
564
Normal
-0.1
494
Normal
-0.1
671
Tumor
-0.1
923
Tumor
-0.1
352
Normal
-0.1
218
Normal
-0.1
968
Normal
-0.1
434
Normal
-0.1
516
Normal
-0.1
954
Normal
-0.1
937
Tumor
-0.1
867
Tumor
-0.1
975
Tumor
-0.1
447
Tumor
-0.1
387
Tumor
-0.1
956
Normal
-0.1
868
Normal
-0.1
728
Normal
-0.1
126
Normal
-0.1
444
Normal
-0.1
567
Tumor
-0.1
616
Normal
-0.1
187
Tumor
-0.1
355
Tumor
-0.1
492
Normal
-0.1
1045
Tumor
-0.1
327
Tumor
-0.1
384
Normal
-0.1
978
Normal
-0.1
558
Normal
-0.1
852
Normal
-0.1
472
Normal
-0.1
517
Tumor
-0.2
615
Tumor
-0.2
383
Tumor
-0.2
185
Tumor
-0.2
865
Tumor
-0.2
284
Normal
-0.2
1042
Normal
-0.2
874
Normal
-0.2
563
Tumor
-0.2
188
Normal
-0.2
386
Normal
-0.2
1044
Normal
-0.2
195
Tumor
-0.2
721
Tumor
-0.2
268
Normal
-0.2
421
Tumor
-0.2
231
Tumor
-0.2
343
Tumor
-0.2
493
Tumor
-0.2
641
Tumor
-0.2
217
Tumor
-0.2
297
Tumor
-0.2
481
Tumor
-0.2
617
Tumor
-0.2
1015
Tumor
-0.2
364
Normal
-0.2
224
Normal
-0.2
514
Normal
-0.2
857
Tumor
-0.2
191
Tumor
-0.3
823
Tumor
-0.3
883
Tumor
-0.3
884
Normal
-0.3
328
Normal
-0.3
212
Normal
-0.3
411
Tumor
-0.3
361
Tumor
-0.3
916
Normal
-0.3
192
Normal
-0.3
873
Tumor
-0.3
498
Normal
-0.3
524
Normal
-0.3
536
Normal
-0.3
467
Tumor
-0.3
497
Tumor
-0.3
213
Tumor
-0.4
861
Tumor
-0.4
557
Tumor
-0.4
415
Tumor
-0.4
161
Tumor
-0.4
817
Tumor
-0.4
478
Normal
-0.4
112
Tumor
-0.4
513
Tumor
-0.4
965
Tumor
-0.4
663
Tumor
-0.4
697
Tumor
-0.4
755
Tumor
-0.4
427
Tumor
-0.4
881
Tumor
-0.4
145
Tumor
-0.5
455
Tumor
-0.5
724
Normal
-0.5
963
Tumor
-0.5
741
Tumor
-0.5
227
Tumor
-0.5
535
Tumor
-0.6
473
Tumor
-0.6
311
Tumor
-0.6
877
Tumor
-0.6
365
Tumor
-0.6
431
Tumor
-0.6
573
Tumor
-0.6
135
Tumor
-0.6
395
Tumor
-0.7
283
Tumor
-0.8
863
Tumor
-0.8
814
Normal
-0.8
813
Tumor
-0.8
125
Tumor
-0.8
1013
Tumor
-0.8
917
Tumor
-0.9
375
Tumor
-0.9
351
Tumor
-0.9
491
Tumor
-1.0
943
Tumor
-1.0
211
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
