We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POLDIP3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
106.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
52.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
46.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
43.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
43.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
42.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
41.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
40.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
39.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
39.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
38.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
37.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
36.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
36.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
36.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
34.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
34.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
33.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
33.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
33.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
30.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
30.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
30.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
30.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
30.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
29.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
29.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
28.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
28.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
27.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
26.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
26.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
25.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
24.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
24.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
24.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
24.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
24.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
22.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
22.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
20.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
20.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POLDIP3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.8
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
59.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
58.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
43.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
40.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
39.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
34.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
34.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
33.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
33.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
33.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
32.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
31.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
30.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
29.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
27.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
26.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.3
743
Tumor
1.3
921
Tumor
1.1
331
Tumor
1.1
965
Tumor
1.0
967
Tumor
1.0
983
Tumor
1.0
661
Tumor
0.8
517
Tumor
0.8
817
Tumor
0.8
695
Tumor
0.8
285
Tumor
0.8
1031
Tumor
0.8
727
Tumor
0.8
977
Tumor
0.8
865
Tumor
0.8
975
Tumor
0.8
641
Tumor
0.8
221
Tumor
0.8
1025
Tumor
0.8
815
Tumor
0.8
271
Tumor
0.7
671
Tumor
0.7
737
Tumor
0.7
685
Tumor
0.7
357
Tumor
0.7
471
Tumor
0.7
553
Tumor
0.7
647
Tumor
0.7
863
Tumor
0.6
881
Tumor
0.6
537
Tumor
0.6
923
Tumor
0.6
443
Tumor
0.6
1021
Tumor
0.6
883
Tumor
0.6
635
Tumor
0.6
937
Tumor
0.5
413
Tumor
0.5
567
Tumor
0.5
877
Tumor
0.5
1045
Tumor
0.5
473
Tumor
0.5
951
Tumor
0.5
497
Tumor
0.5
445
Tumor
0.4
433
Tumor
0.4
477
Tumor
0.4
112
Tumor
0.4
277
Tumor
0.4
925
Tumor
0.4
341
Tumor
0.4
367
Tumor
0.4
313
Tumor
0.4
867
Tumor
0.4
533
Tumor
0.4
355
Tumor
0.4
385
Tumor
0.4
535
Tumor
0.4
953
Tumor
0.4
487
Tumor
0.4
363
Tumor
0.4
351
Tumor
0.4
823
Tumor
0.4
523
Tumor
0.4
527
Tumor
0.3
785
Tumor
0.3
447
Tumor
0.3
425
Tumor
0.3
211
Tumor
0.3
715
Tumor
0.3
127
Tumor
0.3
391
Tumor
0.3
1043
Tumor
0.3
515
Tumor
0.3
435
Tumor
0.3
411
Tumor
0.3
267
Tumor
0.3
545
Tumor
0.3
943
Tumor
0.3
493
Tumor
0.3
123
Tumor
0.3
297
Tumor
0.2
387
Tumor
0.2
1041
Tumor
0.2
913
Tumor
0.2
483
Tumor
0.2
571
Tumor
0.2
455
Tumor
0.2
873
Tumor
0.2
217
Tumor
0.2
463
Tumor
0.2
922
Normal
0.2
915
Tumor
0.2
1015
Tumor
0.2
858
Normal
0.2
663
Tumor
0.2
777
Tumor
0.2
814
Normal
0.2
724
Normal
0.2
818
Normal
0.2
311
Tumor
0.2
665
Tumor
0.2
343
Tumor
0.1
135
Tumor
0.1
955
Tumor
0.1
824
Normal
0.1
755
Tumor
0.1
554
Normal
0.1
957
Tumor
0.1
461
Tumor
0.1
1027
Tumor
0.1
627
Tumor
0.1
465
Tumor
0.1
427
Tumor
0.1
744
Normal
0.1
861
Tumor
0.1
484
Normal
0.1
884
Normal
0.1
864
Normal
0.1
862
Normal
0.1
393
Tumor
0.1
227
Tumor
0.1
878
Normal
0.1
911
Tumor
0.1
421
Tumor
0.1
615
Tumor
0.1
113
Tumor
0.1
912
Normal
0.1
745
Tumor
0.0
171
Tumor
0.0
742
Normal
0.0
1042
Normal
0.0
963
Tumor
0.0
918
Normal
0.0
557
Tumor
0.0
866
Normal
0.0
431
Tumor
0.0
396
Normal
0.0
924
Normal
0.0
696
Normal
0.0
617
Tumor
0.0
728
Normal
0.0
916
Normal
0.0
746
Normal
0.0
513
Tumor
0.0
141
Tumor
0.0
882
Normal
0.0
261
Tumor
0.0
958
Normal
0.0
213
Tumor
0.0
1032
Normal
0.0
257
Tumor
0.0
492
Normal
0.0
964
Normal
0.0
852
Normal
0.0
714
Normal
0.0
298
Normal
0.0
1022
Normal
0.0
481
Tumor
0.0
415
Tumor
0.0
786
Normal
0.0
573
Tumor
0.0
721
Tumor
0.0
472
Normal
0.0
498
Normal
0.0
195
Tumor
0.0
192
Normal
0.0
954
Normal
-0.1
534
Normal
-0.1
857
Tumor
-0.1
1026
Normal
-0.1
966
Normal
-0.1
981
Tumor
-0.1
868
Normal
-0.1
353
Tumor
-0.1
137
Tumor
-0.1
952
Normal
-0.1
518
Normal
-0.1
388
Normal
-0.1
984
Normal
-0.1
968
Normal
-0.1
568
Normal
-0.1
944
Normal
-0.1
1014
Normal
-0.1
462
Normal
-0.1
1046
Normal
-0.1
364
Normal
-0.1
494
Normal
-0.1
874
Normal
-0.1
546
Normal
-0.1
383
Tumor
-0.1
851
Tumor
-0.1
723
Tumor
-0.1
528
Normal
-0.1
536
Normal
-0.1
286
Normal
-0.1
816
Normal
-0.1
395
Tumor
-0.1
778
Normal
-0.1
423
Tumor
-0.1
456
Normal
-0.1
488
Normal
-0.1
978
Normal
-0.1
416
Normal
-0.1
914
Normal
-0.1
938
Normal
-0.1
716
Normal
-0.1
1028
Normal
-0.1
525
Tumor
-0.1
697
Tumor
-0.1
572
Normal
-0.1
412
Normal
-0.1
686
Normal
-0.1
558
Normal
-0.1
926
Normal
-0.1
361
Tumor
-0.1
628
Normal
-0.1
284
Normal
-0.1
1016
Normal
-0.1
563
Tumor
-0.1
474
Normal
-0.1
516
Normal
-0.1
142
Normal
-0.1
648
Normal
-0.1
616
Normal
-0.1
662
Normal
-0.1
722
Normal
-0.2
982
Normal
-0.2
642
Normal
-0.2
574
Normal
-0.2
448
Normal
-0.2
664
Normal
-0.2
738
Normal
-0.2
196
Normal
-0.2
564
Normal
-0.2
328
Normal
-0.2
698
Normal
-0.2
422
Normal
-0.2
392
Normal
-0.2
354
Normal
-0.2
813
Tumor
-0.2
384
Normal
-0.2
713
Tumor
-0.2
222
Normal
-0.2
436
Normal
-0.2
666
Normal
-0.2
218
Normal
-0.2
741
Tumor
-0.2
514
Normal
-0.2
278
Normal
-0.2
356
Normal
-0.2
428
Normal
-0.2
482
Normal
-0.2
283
Tumor
-0.2
327
Tumor
-0.2
185
Tumor
-0.2
426
Normal
-0.2
342
Normal
-0.2
1044
Normal
-0.2
187
Tumor
-0.2
956
Normal
-0.2
386
Normal
-0.2
312
Normal
-0.2
414
Normal
-0.2
618
Normal
-0.2
146
Normal
-0.2
917
Tumor
-0.2
538
Normal
-0.2
124
Normal
-0.2
394
Normal
-0.2
212
Normal
-0.2
672
Normal
-0.2
214
Normal
-0.2
147
Tumor
-0.2
478
Normal
-0.2
228
Normal
-0.2
365
Tumor
-0.2
111
Normal
-0.2
491
Tumor
-0.3
464
Normal
-0.3
467
Tumor
-0.3
145
Tumor
-0.3
424
Normal
-0.3
434
Normal
-0.3
352
Normal
-0.3
756
Normal
-0.3
224
Normal
-0.3
191
Tumor
-0.3
636
Normal
-0.3
223
Tumor
-0.3
232
Normal
-0.3
976
Normal
-0.3
126
Normal
-0.3
186
Normal
-0.3
524
Normal
-0.3
344
Normal
-0.3
362
Normal
-0.3
332
Normal
-0.3
128
Normal
-0.3
468
Normal
-0.3
258
Normal
-0.3
452
Normal
-0.3
231
Tumor
-0.3
526
Normal
-0.3
132
Normal
-0.3
466
Normal
-0.3
446
Normal
-0.3
1013
Tumor
-0.3
114
Normal
-0.4
272
Normal
-0.4
161
Tumor
-0.4
376
Normal
-0.4
314
Normal
-0.4
162
Normal
-0.4
368
Normal
-0.4
451
Tumor
-0.4
366
Normal
-0.4
358
Normal
-0.4
148
Normal
-0.4
444
Normal
-0.4
172
Normal
-0.4
375
Tumor
-0.4
262
Normal
-0.4
268
Normal
-0.4
188
Normal
-0.4
136
Normal
-0.4
138
Normal
-0.4
432
Normal
-0.5
125
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
