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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TOMM22 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
170.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
86.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
85.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
65.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
65.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
63.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
61.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
60.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
57.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
57.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
57.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
56.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
53.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
52.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
51.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
50.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
49.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
49.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
48.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
48.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
48.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
48.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
47.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
47.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
45.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
45.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
44.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
44.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
44.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
44.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
44.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
43.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
43.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
42.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
42.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
42.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
42.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
42.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
41.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
41.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
40.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
40.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
40.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
40.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
40.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
39.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
39.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
39.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
38.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
37.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
37.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
37.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
37.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
37.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
37.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
37.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
37.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
37.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
37.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
37.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
37.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
37.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
36.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
36.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
36.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
36.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
36.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
36.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
36.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
36.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
36.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
35.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
35.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
35.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
35.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
35.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
35.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
35.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
34.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
34.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
34.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
34.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
34.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
34.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
33.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
33.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
33.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
33.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
33.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
33.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
33.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
32.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
32.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
32.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
32.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
32.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
32.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
32.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
31.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
31.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
31.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
31.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
31.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
31.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
31.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
30.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
30.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
30.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
30.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
30.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
30.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
30.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
30.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
30.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
30.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
30.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
30.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
30.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
29.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
29.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
29.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
29.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
29.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
29.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
29.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
29.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
29.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
28.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
28.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
28.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
28.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
28.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
27.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
27.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
27.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
27.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
27.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
27.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
27.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
26.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
26.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
25.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
25.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
25.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
25.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
25.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
24.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
24.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
24.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
24.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
23.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
23.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
22.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
21.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
21.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
21.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
20.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
20.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
20.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
20.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TOMM22 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.3
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
149.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
137.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
131.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
120.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
119.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
115.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
103.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
92.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
87.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
87.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
86.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
81.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
81.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
81.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
79.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
78.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
75.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
75.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
70.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
70.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
70.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
67.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
64.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
63.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
63.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
62.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
62.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
62.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
62.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
61.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
58.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
58.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
57.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
57.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
56.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
55.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
54.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
54.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
54.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
54.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
54.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
53.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
53.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
52.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
52.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
52.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
51.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
51.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
51.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
51.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
50.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
49.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
49.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
49.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
48.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
48.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
48.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
47.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
47.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
47.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
47.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
46.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
46.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
45.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
45.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
44.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
44.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
43.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
43.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
43.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
43.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
43.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
42.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
42.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
42.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
42.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
42.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
41.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
41.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
40.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
40.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
40.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
40.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
40.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
40.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
40.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
39.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
39.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
39.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
39.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
39.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
38.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
38.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
38.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
38.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
38.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
38.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
38.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
37.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
37.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
37.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
36.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
36.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
36.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
36.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
36.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
36.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
36.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
35.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
35.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
35.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
35.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
35.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
35.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
35.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
35.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
34.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
34.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
34.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
34.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
34.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
34.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
34.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
34.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
34.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
33.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
33.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
33.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
33.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
33.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
33.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
33.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
33.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
33.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
32.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
32.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
32.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
32.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
32.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
32.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
32.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
32.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
32.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
31.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
31.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
31.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
30.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
30.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
30.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
30.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
30.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
30.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
29.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
28.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
27.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
27.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
26.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
26.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
24.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
24.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
21.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
571
Tumor
1.4
627
Tumor
1.2
567
Tumor
1.0
671
Tumor
1.0
635
Tumor
1.0
1027
Tumor
0.9
745
Tumor
0.9
127
Tumor
0.9
573
Tumor
0.8
665
Tumor
0.8
967
Tumor
0.8
361
Tumor
0.8
517
Tumor
0.7
331
Tumor
0.7
435
Tumor
0.7
393
Tumor
0.7
465
Tumor
0.7
231
Tumor
0.7
267
Tumor
0.7
615
Tumor
0.7
557
Tumor
0.7
1015
Tumor
0.6
297
Tumor
0.6
387
Tumor
0.6
641
Tumor
0.6
925
Tumor
0.5
341
Tumor
0.5
743
Tumor
0.5
425
Tumor
0.5
145
Tumor
0.5
911
Tumor
0.5
285
Tumor
0.5
367
Tumor
0.5
647
Tumor
0.5
137
Tumor
0.5
113
Tumor
0.5
445
Tumor
0.5
365
Tumor
0.5
383
Tumor
0.5
865
Tumor
0.4
741
Tumor
0.4
171
Tumor
0.4
513
Tumor
0.4
112
Tumor
0.4
727
Tumor
0.4
815
Tumor
0.4
141
Tumor
0.4
1041
Tumor
0.4
867
Tumor
0.4
1045
Tumor
0.4
221
Tumor
0.4
391
Tumor
0.4
663
Tumor
0.4
257
Tumor
0.4
271
Tumor
0.4
463
Tumor
0.4
873
Tumor
0.4
385
Tumor
0.4
433
Tumor
0.4
431
Tumor
0.3
351
Tumor
0.3
314
Normal
0.3
785
Tumor
0.3
421
Tumor
0.3
1021
Tumor
0.3
123
Tumor
0.3
877
Tumor
0.3
278
Normal
0.3
135
Tumor
0.3
695
Tumor
0.3
685
Tumor
0.3
227
Tumor
0.3
525
Tumor
0.3
423
Tumor
0.3
713
Tumor
0.2
213
Tumor
0.2
353
Tumor
0.2
537
Tumor
0.2
411
Tumor
0.2
332
Normal
0.2
413
Tumor
0.2
138
Normal
0.2
132
Normal
0.2
661
Tumor
0.2
724
Normal
0.2
563
Tumor
0.2
427
Tumor
0.2
191
Tumor
0.2
883
Tumor
0.2
195
Tumor
0.2
443
Tumor
0.2
261
Tumor
0.2
515
Tumor
0.2
446
Normal
0.2
451
Tumor
0.2
125
Tumor
0.2
187
Tumor
0.2
477
Tumor
0.2
636
Normal
0.2
642
Normal
0.2
217
Tumor
0.2
126
Normal
0.2
851
Tumor
0.2
136
Normal
0.1
777
Tumor
0.1
983
Tumor
0.1
357
Tumor
0.1
223
Tumor
0.1
1043
Tumor
0.1
313
Tumor
0.1
628
Normal
0.1
436
Normal
0.1
277
Tumor
0.1
298
Normal
0.1
147
Tumor
0.1
857
Tumor
0.1
232
Normal
0.1
363
Tumor
0.1
414
Normal
0.1
483
Tumor
0.1
1025
Tumor
0.1
394
Normal
0.1
114
Normal
0.1
823
Tumor
0.1
915
Tumor
0.1
128
Normal
0.1
452
Normal
0.1
564
Normal
0.1
262
Normal
0.1
395
Tumor
0.1
111
Normal
0.1
618
Normal
0.1
172
Normal
0.1
161
Tumor
0.1
124
Normal
0.1
487
Tumor
0.1
424
Normal
0.1
392
Normal
0.0
648
Normal
0.0
426
Normal
0.0
737
Tumor
0.0
616
Normal
0.0
921
Tumor
0.0
162
Normal
0.0
863
Tumor
0.0
617
Tumor
0.0
461
Tumor
0.0
258
Normal
0.0
664
Normal
0.0
396
Normal
0.0
697
Tumor
0.0
432
Normal
0.0
466
Normal
0.0
185
Tumor
0.0
312
Normal
0.0
818
Normal
0.0
456
Normal
0.0
662
Normal
0.0
666
Normal
0.0
468
Normal
0.0
721
Tumor
0.0
268
Normal
0.0
574
Normal
0.0
422
Normal
0.0
714
Normal
0.0
497
Tumor
0.0
824
Normal
0.0
368
Normal
0.0
981
Tumor
0.0
146
Normal
0.0
384
Normal
0.0
568
Normal
0.0
148
Normal
0.0
1046
Normal
-0.1
913
Tumor
-0.1
672
Normal
-0.1
467
Tumor
-0.1
447
Tumor
-0.1
786
Normal
-0.1
327
Tumor
-0.1
186
Normal
-0.1
965
Tumor
-0.1
464
Normal
-0.1
715
Tumor
-0.1
923
Tumor
-0.1
455
Tumor
-0.1
388
Normal
-0.1
912
Normal
-0.1
358
Normal
-0.1
366
Normal
-0.1
858
Normal
-0.1
722
Normal
-0.1
742
Normal
-0.1
286
Normal
-0.1
375
Tumor
-0.1
744
Normal
-0.1
222
Normal
-0.1
755
Tumor
-0.1
864
Normal
-0.1
473
Tumor
-0.1
937
Tumor
-0.1
356
Normal
-0.1
386
Normal
-0.1
188
Normal
-0.1
376
Normal
-0.2
914
Normal
-0.2
868
Normal
-0.2
142
Normal
-0.2
527
Tumor
-0.2
861
Tumor
-0.2
982
Normal
-0.2
813
Tumor
-0.2
558
Normal
-0.2
444
Normal
-0.2
196
Normal
-0.2
214
Normal
-0.2
342
Normal
-0.2
428
Normal
-0.2
953
Tumor
-0.2
362
Normal
-0.2
311
Tumor
-0.2
1013
Tumor
-0.2
716
Normal
-0.2
284
Normal
-0.2
514
Normal
-0.2
922
Normal
-0.2
951
Tumor
-0.2
224
Normal
-0.2
1031
Tumor
-0.2
352
Normal
-0.2
272
Normal
-0.2
448
Normal
-0.2
977
Tumor
-0.2
526
Normal
-0.2
881
Tumor
-0.2
131
Tumor
-0.2
416
Normal
-0.2
866
Normal
-0.2
344
Normal
-0.2
481
Tumor
-0.2
884
Normal
-0.2
817
Tumor
-0.2
354
Normal
-0.2
434
Normal
-0.2
924
Normal
-0.2
746
Normal
-0.2
328
Normal
-0.2
1016
Normal
-0.2
686
Normal
-0.2
1022
Normal
-0.2
491
Tumor
-0.3
523
Tumor
-0.3
814
Normal
-0.3
572
Normal
-0.3
723
Tumor
-0.3
1028
Normal
-0.3
975
Tumor
-0.3
728
Normal
-0.3
1014
Normal
-0.3
944
Normal
-0.3
228
Normal
-0.3
738
Normal
-0.3
816
Normal
-0.3
984
Normal
-0.3
283
Tumor
-0.3
874
Normal
-0.3
756
Normal
-0.3
218
Normal
-0.3
1026
Normal
-0.3
462
Normal
-0.3
955
Tumor
-0.3
852
Normal
-0.3
952
Normal
-0.3
1044
Normal
-0.3
926
Normal
-0.3
978
Normal
-0.3
882
Normal
-0.3
493
Tumor
-0.3
964
Normal
-0.3
535
Tumor
-0.3
862
Normal
-0.3
878
Normal
-0.3
696
Normal
-0.3
192
Normal
-0.3
1042
Normal
-0.4
918
Normal
-0.4
364
Normal
-0.4
1032
Normal
-0.4
471
Tumor
-0.4
528
Normal
-0.4
488
Normal
-0.4
518
Normal
-0.4
963
Tumor
-0.4
954
Normal
-0.4
553
Tumor
-0.4
938
Normal
-0.4
412
Normal
-0.4
524
Normal
-0.4
778
Normal
-0.4
698
Normal
-0.5
415
Tumor
-0.5
494
Normal
-0.5
956
Normal
-0.5
484
Normal
-0.5
534
Normal
-0.5
916
Normal
-0.5
976
Normal
-0.5
546
Normal
-0.5
968
Normal
-0.6
472
Normal
-0.6
343
Tumor
-0.6
516
Normal
-0.6
212
Normal
-0.6
474
Normal
-0.6
482
Normal
-0.6
498
Normal
-0.7
943
Tumor
-0.7
211
Tumor
-0.7
958
Normal
-0.7
966
Normal
-0.7
536
Normal
-0.7
478
Normal
-0.7
355
Tumor
-0.8
533
Tumor
-0.8
492
Normal
-0.8
917
Tumor
-0.9
545
Tumor
-0.9
538
Normal
-0.9
957
Tumor
-0.9
554
Normal
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
