MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:82.3 nTPM
HPA Brain:93.7 nTPM
GTEx:82.3 nTPM
FANTOM5:189.7 Scaled Tags Per Million
Pig:188.2 nTPM
Mouse:35.9 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 93.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.0
1830 Male, age 51, unknown 92.8
1833 Male, age 53, unknown 89.7
2586 Male, age 75, left hemisphere 89.1
1870 Female, age 42, unknown 85.3
2019 Male, age 18, unknown 77.4
2411 Female, age 72, unknown 76.0
2666 Male, age 74, left hemisphere 75.5
1827 Male, age 72, unknown 66.2
2828 Female, age 72, unknown 65.7
2219 Male, age 76, both hemispheres 62.7
Dorsal raphe nucleus
nTPM: 61.0
2750 Male, age 76, both hemispheres 86.6
1828 Male, age 53, unknown 63.8
2047 Male, age 72, unknown 60.9
2016 Female, age 72, unknown 54.4
2298 Female, age 72, unknown 39.2
Inferior colliculus
nTPM: 65.0
2849 Male, age 72, unknown 78.5
1890 Male, age 53, unknown 67.4
1848 Female, age 42, unknown 64.5
2097 Female, age 72, unknown 49.6
Median raphe nucleus
nTPM: 61.5
2220 Male, age 76, midline 61.5
Periaquaductal grey, anterior
nTPM: 63.5
1947 Male, age 18, unknown 69.6
2502 Female, age 75, unknown 62.1
1795 Male, age 51, unknown 59.0
Periaquaductal grey, dorsal
nTPM: 52.8
2464 Female, age 72, unknown 62.0
1831 Male, age 72, unknown 54.9
1840 Male, age 53, unknown 47.2
2850 Male, age 76, both hemispheres 47.1
Periaquaductal grey, lateral
nTPM: 54.3
2053 Male, age 18, unknown 59.2
2272 Male, age 74, both hemispheres 53.8
2140 Male, age 76, both hemispheres 49.8
Pretectal area
nTPM: 66.6
2407 Male, age 75, both hemispheres 90.0
2007 Male, age 72, unknown 75.0
1817 Female, age 42, unknown 73.7
2316 Male, age 76, right hemisphere 73.5
1815 Male, age 53, unknown 71.8
2825 Male, age 18, unknown 66.8
2667 Female, age 75, unknown 60.3
1816 Male, age 51, unknown 58.6
1944 Female, age 72, unknown 57.6
2224 Female, age 72, unknown 56.8
2273 Male, age 74, both hemispheres 48.7
Red nucleus
nTPM: 93.7
2823 Male, age 76, right hemisphere 114.4
1865 Male, age 51, unknown 107.3
2588 Male, age 74, left hemisphere 106.6
2584 Male, age 75, left hemisphere 98.1
1904 Male, age 53, unknown 92.8
2227 Male, age 72, unknown 90.0
2769 Male, age 72, unknown 89.9
2503 Female, age 72, unknown 88.4
2785 Male, age 18, unknown 87.3
2725 Female, age 75, unknown 87.2
1821 Female, age 72, unknown 83.5
1954 Female, age 42, unknown 78.7
Substantia nigra
nTPM: 71.1
2409 Female, age 72, unknown 88.3
2583 Male, age 75, right hemisphere 87.5
2590 Female, age 75, unknown 75.1
2699 Male, age 18, unknown 74.9
1851 Male, age 51, unknown 69.5
1889 Female, age 72, unknown 67.6
1941 Male, age 53, unknown 66.4
2665 Male, age 74, both hemispheres 63.3
1916 Female, age 42, unknown 63.2
2241 Male, age 72, unknown 55.2
Superior colliculus
nTPM: 71.5
1913 Female, age 42, unknown 93.4
1895 Male, age 76, right hemisphere 80.5
2668 Female, age 75, unknown 78.8
2664 Male, age 75, both hemispheres 77.6
1995 Male, age 72, unknown 75.0
2587 Male, age 74, left hemisphere 67.7
1839 Male, age 51, unknown 65.0
1796 Male, age 53, unknown 60.8
2261 Male, age 18, unknown 58.1
2087 Female, age 72, unknown 57.7
Ventral tegmental area
nTPM: 70.4
2223 Female, age 72, unknown 91.8
2410 Female, age 72, unknown 73.5
1942 Male, age 51, unknown 66.7
2021 Male, age 53, unknown 66.6
2218 Male, age 76, both hemispheres 62.0
1915 Female, age 42, unknown 61.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 82.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 82.3
Samples: 139

Max nTPM: 187.5
Min nTPM: 33.2
Std nTPM: 23.8
Median nTPM: 77.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 187.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 184.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 153.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 143.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 139.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 137.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 129.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 126.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 123.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 120.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 118.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 189.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 189.7
FF:10158-103A5 76 years, female 189.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 188.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 173.9
Samples: 4

Max nTPM: 241.0
Min nTPM: 147.4
Sample A Female 241.0
Sample B Female 157.3
Sample C Male 150.0
Sample D Male 147.4
Midbrain
nTPM: 188.2
Samples: 4

Max nTPM: 306.0
Min nTPM: 127.4
Sample A Female 306.0
Sample B Female 173.9
Sample C Male 127.4
Sample D Male 145.4
Periaqueductal gray
nTPM: 149.2
Samples: 3

Max nTPM: 162.9
Min nTPM: 139.6
Sample B Female 145.1
Sample C Male 162.9
Sample D Male 139.6
Superior colliculi
nTPM: 180.3
Samples: 4

Max nTPM: 246.3
Min nTPM: 140.0
Sample A Female 246.3
Sample B Female 171.1
Sample C Male 140.0
Sample D Male 163.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 35.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.9
Samples: 4

Max nTPM: 40.9
Min nTPM: 28.2
Sample A Male 40.9
Sample B Male 36.6
Sample C Female 28.2
Sample D Female 38.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
75861880 Antisense, RP_060601_03_B10, Mouse strain C57BL/6J (56 days, male) 1.0

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