We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNU13 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
88.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
323.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
260.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
247.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
243.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
230.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
206.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
205.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
204.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
204.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
201.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
194.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
193.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
190.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
188.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
183.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
182.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
170.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
164.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
159.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
158.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
155.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
154.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
153.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
153.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
153.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
151.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
150.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
149.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
149.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
145.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
144.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
144.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
144.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
143.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
142.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
142.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
139.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
139.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
138.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
134.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
134.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
131.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
130.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
129.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
129.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
128.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
128.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
127.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
126.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
126.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
126.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
125.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
124.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
124.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
124.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
124.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
123.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
123.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
122.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
122.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
120.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
120.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
120.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
120.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
118.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
117.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
116.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
115.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
115.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
114.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
114.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
113.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
112.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
111.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
111.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
111.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
111.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
110.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
109.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
109.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
108.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
107.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
107.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
106.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
106.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
105.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
105.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
104.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
104.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
103.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
102.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
101.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
100.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
100.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
100.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
100.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
100.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
100.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
100.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
100.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
99.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
98.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
98.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
98.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
98.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
97.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
96.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
96.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
96.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
96.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
96.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
95.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
95.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
95.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
95.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
95.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
95.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
94.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
94.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
94.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
94.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
94.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
94.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
93.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
93.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
93.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
93.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
93.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
93.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
92.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
92.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
91.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
91.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
91.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
90.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
90.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
90.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
90.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
89.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
89.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
88.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
88.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
88.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
88.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
88.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
87.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
87.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
87.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
87.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
86.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
86.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
86.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
86.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
85.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
85.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
85.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
85.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
85.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
85.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
85.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
84.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
84.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
84.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
84.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
83.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
83.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
83.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
83.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
82.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
82.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
82.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
82.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
81.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
80.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
80.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
80.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
79.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
79.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
79.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
79.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
79.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
79.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
79.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
79.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
79.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
79.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
79.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
78.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
78.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
77.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
77.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
77.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
77.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
76.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
75.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
75.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
75.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
75.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
75.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
75.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
74.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
74.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
74.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
74.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
74.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
74.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
73.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
73.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
73.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
73.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
72.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
72.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
72.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
71.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
71.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
71.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
71.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
71.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
71.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
71.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
70.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
70.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
70.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
70.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
70.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
70.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
70.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
70.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
69.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
69.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
69.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
69.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
69.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
69.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
68.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
68.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
68.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
68.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
68.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
68.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
68.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
68.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
67.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
67.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
67.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
67.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
67.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
67.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
66.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
66.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
66.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
66.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
66.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
66.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
65.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
65.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
65.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
65.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
65.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
65.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
65.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
65.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
65.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
65.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
64.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
63.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
63.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
63.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
63.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
63.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
63.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
63.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
63.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
63.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
62.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
62.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
62.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
62.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
62.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
62.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
61.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
61.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
61.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
61.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
61.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
60.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
60.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
60.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
60.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
60.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
59.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
59.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
59.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
58.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
58.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
58.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
58.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
58.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
58.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
58.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
58.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
58.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
57.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
57.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
57.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
56.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
56.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
55.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
54.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
54.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
54.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
54.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
54.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
54.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
53.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
53.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
52.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
51.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
51.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
51.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
51.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
51.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
50.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
50.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
50.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
50.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
50.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
50.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
50.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
48.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
47.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
47.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
47.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
46.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
46.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
46.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
46.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
46.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
45.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
45.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
44.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
43.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
43.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
43.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
43.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
42.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
42.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
42.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
42.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
41.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
41.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
41.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
40.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
37.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
36.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
36.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
34.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
34.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
34.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
32.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
27.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
0.9
557
Tumor
0.9
395
Tumor
0.9
743
Tumor
0.9
331
Tumor
0.9
685
Tumor
0.8
1021
Tumor
0.8
1041
Tumor
0.8
227
Tumor
0.8
1031
Tumor
0.8
483
Tumor
0.7
951
Tumor
0.7
517
Tumor
0.7
877
Tumor
0.6
471
Tumor
0.6
965
Tumor
0.6
367
Tumor
0.6
537
Tumor
0.6
967
Tumor
0.6
285
Tumor
0.5
271
Tumor
0.5
815
Tumor
0.5
661
Tumor
0.5
385
Tumor
0.5
983
Tumor
0.5
715
Tumor
0.5
363
Tumor
0.5
477
Tumor
0.5
975
Tumor
0.5
881
Tumor
0.4
185
Tumor
0.4
817
Tumor
0.4
545
Tumor
0.4
533
Tumor
0.4
221
Tumor
0.4
883
Tumor
0.4
135
Tumor
0.4
671
Tumor
0.4
413
Tumor
0.4
911
Tumor
0.3
427
Tumor
0.3
535
Tumor
0.3
267
Tumor
0.3
497
Tumor
0.3
963
Tumor
0.3
567
Tumor
0.3
112
Tumor
0.3
1015
Tumor
0.3
431
Tumor
0.3
297
Tumor
0.2
261
Tumor
0.2
977
Tumor
0.2
391
Tumor
0.2
425
Tumor
0.2
123
Tumor
0.2
351
Tumor
0.2
493
Tumor
0.2
641
Tumor
0.2
223
Tumor
0.2
421
Tumor
0.2
867
Tumor
0.2
455
Tumor
0.2
447
Tumor
0.2
913
Tumor
0.2
925
Tumor
0.2
383
Tumor
0.2
937
Tumor
0.1
865
Tumor
0.1
353
Tumor
0.1
433
Tumor
0.1
727
Tumor
0.1
878
Normal
0.1
127
Tumor
0.1
171
Tumor
0.1
984
Normal
0.1
375
Tumor
0.1
724
Normal
0.1
981
Tumor
0.1
823
Tumor
0.1
113
Tumor
0.1
695
Tumor
0.1
465
Tumor
0.1
573
Tumor
0.1
461
Tumor
0.1
697
Tumor
0.1
211
Tumor
0.1
617
Tumor
0.1
445
Tumor
0.1
231
Tumor
0.1
525
Tumor
0.1
357
Tumor
0.1
571
Tumor
0.0
217
Tumor
0.0
744
Normal
0.0
536
Normal
0.0
443
Tumor
0.0
1014
Normal
0.0
277
Tumor
0.0
737
Tumor
0.0
917
Tumor
0.0
741
Tumor
0.0
813
Tumor
0.0
921
Tumor
0.0
943
Tumor
0.0
487
Tumor
0.0
137
Tumor
0.0
268
Normal
0.0
938
Normal
0.0
311
Tumor
0.0
415
Tumor
0.0
851
Tumor
-0.1
467
Tumor
-0.1
492
Normal
-0.1
524
Normal
-0.1
1028
Normal
-0.1
955
Tumor
-0.1
1025
Tumor
-0.1
857
Tumor
-0.1
982
Normal
-0.1
738
Normal
-0.1
968
Normal
-0.1
665
Tumor
-0.1
721
Tumor
-0.1
341
Tumor
-0.1
344
Normal
-0.1
213
Tumor
-0.1
412
Normal
-0.1
861
Tumor
-0.1
435
Tumor
-0.1
192
Normal
-0.1
451
Tumor
-0.1
966
Normal
-0.1
647
Tumor
-0.1
488
Normal
-0.1
387
Tumor
-0.1
513
Tumor
-0.1
354
Normal
-0.1
663
Tumor
-0.1
283
Tumor
-0.1
355
Tumor
-0.1
553
Tumor
-0.1
343
Tumor
-0.1
957
Tumor
-0.1
873
Tumor
-0.1
423
Tumor
-0.1
1045
Tumor
-0.1
615
Tumor
-0.1
635
Tumor
-0.1
484
Normal
-0.1
538
Normal
-0.1
954
Normal
-0.2
1013
Tumor
-0.2
882
Normal
-0.2
361
Tumor
-0.2
1032
Normal
-0.2
494
Normal
-0.2
915
Tumor
-0.2
142
Normal
-0.2
563
Tumor
-0.2
327
Tumor
-0.2
686
Normal
-0.2
814
Normal
-0.2
953
Tumor
-0.2
141
Tumor
-0.2
1016
Normal
-0.2
187
Tumor
-0.2
342
Normal
-0.2
534
Normal
-0.2
1027
Tumor
-0.2
358
Normal
-0.2
714
Normal
-0.2
228
Normal
-0.2
498
Normal
-0.2
742
Normal
-0.2
515
Tumor
-0.2
716
Normal
-0.2
816
Normal
-0.2
713
Tumor
-0.2
478
Normal
-0.2
866
Normal
-0.2
284
Normal
-0.2
1044
Normal
-0.2
1026
Normal
-0.2
257
Tumor
-0.2
145
Tumor
-0.2
473
Tumor
-0.2
785
Tumor
-0.2
278
Normal
-0.2
956
Normal
-0.2
463
Tumor
-0.2
352
Normal
-0.2
824
Normal
-0.3
365
Tumor
-0.3
912
Normal
-0.3
434
Normal
-0.3
191
Tumor
-0.3
914
Normal
-0.3
272
Normal
-0.3
448
Normal
-0.3
864
Normal
-0.3
952
Normal
-0.3
384
Normal
-0.3
698
Normal
-0.3
526
Normal
-0.3
1046
Normal
-0.3
818
Normal
-0.3
462
Normal
-0.3
212
Normal
-0.3
922
Normal
-0.3
944
Normal
-0.3
696
Normal
-0.3
393
Tumor
-0.3
313
Tumor
-0.3
723
Tumor
-0.3
958
Normal
-0.3
298
Normal
-0.3
916
Normal
-0.3
964
Normal
-0.3
778
Normal
-0.3
1022
Normal
-0.3
516
Normal
-0.3
874
Normal
-0.3
978
Normal
-0.3
126
Normal
-0.3
746
Normal
-0.3
976
Normal
-0.3
161
Tumor
-0.3
411
Tumor
-0.3
128
Normal
-0.3
146
Normal
-0.3
224
Normal
-0.3
523
Tumor
-0.3
472
Normal
-0.3
392
Normal
-0.3
111
Normal
-0.3
138
Normal
-0.3
616
Normal
-0.3
924
Normal
-0.3
188
Normal
-0.3
862
Normal
-0.3
858
Normal
-0.3
722
Normal
-0.4
214
Normal
-0.4
636
Normal
-0.4
884
Normal
-0.4
368
Normal
-0.4
518
Normal
-0.4
147
Tumor
-0.4
923
Tumor
-0.4
196
Normal
-0.4
362
Normal
-0.4
396
Normal
-0.4
786
Normal
-0.4
388
Normal
-0.4
195
Tumor
-0.4
863
Tumor
-0.4
728
Normal
-0.4
356
Normal
-0.4
1043
Tumor
-0.4
232
Normal
-0.4
328
Normal
-0.4
618
Normal
-0.4
474
Normal
-0.4
1042
Normal
-0.4
394
Normal
-0.4
777
Tumor
-0.4
852
Normal
-0.4
286
Normal
-0.4
124
Normal
-0.4
332
Normal
-0.4
436
Normal
-0.4
386
Normal
-0.4
262
Normal
-0.4
662
Normal
-0.4
466
Normal
-0.4
366
Normal
-0.4
132
Normal
-0.4
452
Normal
-0.4
364
Normal
-0.5
114
Normal
-0.5
444
Normal
-0.5
546
Normal
-0.5
416
Normal
-0.5
627
Tumor
-0.5
554
Normal
-0.5
426
Normal
-0.5
628
Normal
-0.5
136
Normal
-0.5
422
Normal
-0.5
491
Tumor
-0.5
482
Normal
-0.5
574
Normal
-0.5
514
Normal
-0.5
564
Normal
-0.5
162
Normal
-0.5
642
Normal
-0.5
755
Tumor
-0.5
672
Normal
-0.5
527
Tumor
-0.5
376
Normal
-0.5
918
Normal
-0.5
125
Tumor
-0.5
664
Normal
-0.5
481
Tumor
-0.5
868
Normal
-0.5
414
Normal
-0.5
745
Tumor
-0.5
312
Normal
-0.5
314
Normal
-0.5
148
Normal
-0.5
572
Normal
-0.5
446
Normal
-0.6
432
Normal
-0.6
424
Normal
-0.6
218
Normal
-0.6
756
Normal
-0.6
186
Normal
-0.6
258
Normal
-0.6
528
Normal
-0.6
428
Normal
-0.6
648
Normal
-0.6
172
Normal
-0.7
222
Normal
-0.7
568
Normal
-0.7
468
Normal
-0.7
666
Normal
-0.7
926
Normal
-0.7
558
Normal
-0.7
464
Normal
-0.8
456
Normal
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
