MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.2 nTPM
HPA Brain:25.8 nTPM
GTEx:25.2 nTPM
FANTOM5:11.6 Scaled Tags Per Million
Pig:11.9 nTPM
Mouse:10.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 25.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.5
2586 Male, age 75, left hemisphere 28.1
2019 Male, age 18, unknown 24.2
2411 Female, age 72, unknown 22.6
2219 Male, age 76, both hemispheres 22.4
1827 Male, age 72, unknown 20.2
1833 Male, age 53, unknown 18.8
2828 Female, age 72, unknown 18.3
1870 Female, age 42, unknown 17.9
2666 Male, age 74, left hemisphere 16.7
1830 Male, age 51, unknown 15.5
Dorsal raphe nucleus
nTPM: 23.9
2298 Female, age 72, unknown 28.2
2047 Male, age 72, unknown 26.4
2750 Male, age 76, both hemispheres 23.9
1828 Male, age 53, unknown 22.6
2016 Female, age 72, unknown 18.5
Inferior colliculus
nTPM: 18.6
2097 Female, age 72, unknown 19.9
1890 Male, age 53, unknown 19.1
1848 Female, age 42, unknown 19.0
2849 Male, age 72, unknown 16.2
Median raphe nucleus
nTPM: 25.8
2220 Male, age 76, midline 25.8
Periaquaductal grey, anterior
nTPM: 19.5
1795 Male, age 51, unknown 21.4
2502 Female, age 75, unknown 21.3
1947 Male, age 18, unknown 15.7
Periaquaductal grey, dorsal
nTPM: 18.4
1840 Male, age 53, unknown 19.5
2464 Female, age 72, unknown 19.2
2850 Male, age 76, both hemispheres 18.2
1831 Male, age 72, unknown 16.5
Periaquaductal grey, lateral
nTPM: 18.6
2140 Male, age 76, both hemispheres 19.6
2272 Male, age 74, both hemispheres 18.4
2053 Male, age 18, unknown 17.7
Pretectal area
nTPM: 21.4
2007 Male, age 72, unknown 27.0
1816 Male, age 51, unknown 25.7
1817 Female, age 42, unknown 24.1
1944 Female, age 72, unknown 23.9
2667 Female, age 75, unknown 23.0
2224 Female, age 72, unknown 22.0
1815 Male, age 53, unknown 21.5
2273 Male, age 74, both hemispheres 20.2
2825 Male, age 18, unknown 18.2
2316 Male, age 76, right hemisphere 16.4
2407 Male, age 75, both hemispheres 13.5
Red nucleus
nTPM: 20.9
2503 Female, age 72, unknown 22.6
1821 Female, age 72, unknown 22.4
2785 Male, age 18, unknown 22.4
2725 Female, age 75, unknown 22.1
2227 Male, age 72, unknown 21.6
2823 Male, age 76, right hemisphere 21.6
1904 Male, age 53, unknown 20.9
2588 Male, age 74, left hemisphere 20.9
2769 Male, age 72, unknown 20.9
1954 Female, age 42, unknown 20.6
1865 Male, age 51, unknown 19.0
2584 Male, age 75, left hemisphere 16.3
Substantia nigra
nTPM: 24.3
1916 Female, age 42, unknown 33.5
1851 Male, age 51, unknown 27.2
2409 Female, age 72, unknown 27.2
1889 Female, age 72, unknown 25.2
1941 Male, age 53, unknown 23.8
2699 Male, age 18, unknown 23.8
2241 Male, age 72, unknown 22.6
2665 Male, age 74, both hemispheres 22.4
2590 Female, age 75, unknown 19.7
2583 Male, age 75, right hemisphere 17.3
Superior colliculus
nTPM: 19.4
2087 Female, age 72, unknown 23.4
2261 Male, age 18, unknown 22.4
1796 Male, age 53, unknown 21.6
2664 Male, age 75, both hemispheres 19.9
1895 Male, age 76, right hemisphere 19.6
1839 Male, age 51, unknown 19.3
2668 Female, age 75, unknown 18.3
1995 Male, age 72, unknown 17.3
1913 Female, age 42, unknown 16.4
2587 Male, age 74, left hemisphere 16.0
Ventral tegmental area
nTPM: 23.8
2410 Female, age 72, unknown 30.2
1915 Female, age 42, unknown 25.5
2218 Male, age 76, both hemispheres 23.9
1942 Male, age 51, unknown 21.7
2021 Male, age 53, unknown 21.3
2223 Female, age 72, unknown 20.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 25.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.2
Samples: 139

Max nTPM: 64.5
Min nTPM: 9.4
Std nTPM: 7.8
Median nTPM: 24.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 64.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 46.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 43.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 39.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 39.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 38.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 37.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 37.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 36.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 36.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 36.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.6
FF:10158-103A5 76 years, female 11.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.3
Samples: 4

Max nTPM: 13.3
Min nTPM: 9.1
Sample A Female 13.3
Sample B Female 9.8
Sample C Male 12.8
Sample D Male 9.1
Midbrain
nTPM: 11.9
Samples: 4

Max nTPM: 13.6
Min nTPM: 10.5
Sample A Female 12.1
Sample B Female 10.5
Sample C Male 13.6
Sample D Male 11.4
Periaqueductal gray
nTPM: 8.9
Samples: 3

Max nTPM: 9.8
Min nTPM: 7.9
Sample B Female 8.9
Sample C Male 9.8
Sample D Male 7.9
Superior colliculi
nTPM: 10.7
Samples: 4

Max nTPM: 12.3
Min nTPM: 9.1
Sample A Female 11.5
Sample B Female 9.1
Sample C Male 12.3
Sample D Male 9.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.2
Samples: 4

Max nTPM: 11.6
Min nTPM: 8.8
Sample A Male 11.6
Sample B Male 9.0
Sample C Female 8.8
Sample D Female 11.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68499135 Antisense, RP_050118_01_A05, Mouse strain C57BL/6J (56 days, male) 0.1

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