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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIK3IP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
66.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
49.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
46.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
42.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
33.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
29.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
25.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
24.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIK3IP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.8
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
120.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
45.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
34.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
33.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
32.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
32.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
31.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
30.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.7
921
Tumor
1.1
471
Tumor
1.1
343
Tumor
1.0
533
Tumor
1.0
443
Tumor
1.0
563
Tumor
0.9
331
Tumor
0.9
823
Tumor
0.8
664
Normal
0.8
387
Tumor
0.8
477
Tumor
0.8
483
Tumor
0.8
538
Normal
0.7
421
Tumor
0.7
223
Tumor
0.7
297
Tumor
0.7
444
Normal
0.7
211
Tumor
0.7
524
Normal
0.7
916
Normal
0.7
416
Normal
0.6
384
Normal
0.6
525
Tumor
0.6
553
Tumor
0.6
881
Tumor
0.6
467
Tumor
0.6
857
Tumor
0.6
814
Normal
0.6
498
Normal
0.6
727
Tumor
0.6
917
Tumor
0.6
1043
Tumor
0.6
361
Tumor
0.6
964
Normal
0.6
517
Tumor
0.6
258
Normal
0.6
817
Tumor
0.6
385
Tumor
0.6
851
Tumor
0.6
554
Normal
0.6
224
Normal
0.5
455
Tumor
0.5
468
Normal
0.5
365
Tumor
0.5
375
Tumor
0.5
492
Normal
0.5
137
Tumor
0.5
958
Normal
0.5
852
Normal
0.5
516
Normal
0.5
716
Normal
0.5
362
Normal
0.5
364
Normal
0.4
883
Tumor
0.4
138
Normal
0.4
187
Tumor
0.4
696
Normal
0.4
185
Tumor
0.4
714
Normal
0.4
126
Normal
0.4
874
Normal
0.4
968
Normal
0.4
661
Tumor
0.4
513
Tumor
0.4
311
Tumor
0.4
813
Tumor
0.4
728
Normal
0.4
112
Tumor
0.4
328
Normal
0.4
574
Normal
0.4
383
Tumor
0.3
913
Tumor
0.3
545
Tumor
0.3
478
Normal
0.3
232
Normal
0.3
456
Normal
0.3
465
Tumor
0.3
721
Tumor
0.3
976
Normal
0.3
1031
Tumor
0.3
363
Tumor
0.3
366
Normal
0.3
415
Tumor
0.3
713
Tumor
0.3
723
Tumor
0.3
975
Tumor
0.3
313
Tumor
0.3
368
Normal
0.3
815
Tumor
0.3
113
Tumor
0.3
493
Tumor
0.3
434
Normal
0.3
515
Tumor
0.2
461
Tumor
0.2
744
Normal
0.2
686
Normal
0.2
262
Normal
0.2
451
Tumor
0.2
386
Normal
0.2
356
Normal
0.2
344
Normal
0.2
636
Normal
0.2
785
Tumor
0.2
967
Tumor
0.2
1044
Normal
0.2
135
Tumor
0.2
327
Tumor
0.2
285
Tumor
0.2
494
Normal
0.2
738
Normal
0.2
412
Normal
0.2
268
Normal
0.2
484
Normal
0.2
918
Normal
0.1
433
Tumor
0.1
535
Tumor
0.1
267
Tumor
0.1
424
Normal
0.1
272
Normal
0.1
617
Tumor
0.1
188
Normal
0.1
376
Normal
0.1
367
Tumor
0.1
982
Normal
0.1
742
Normal
0.1
618
Normal
0.1
422
Normal
0.1
413
Tumor
0.1
924
Normal
0.1
861
Tumor
0.1
146
Normal
0.1
966
Normal
0.1
737
Tumor
0.1
473
Tumor
0.1
662
Normal
0.1
672
Normal
0.1
145
Tumor
0.1
915
Tumor
0.1
523
Tumor
0.1
1032
Normal
0.1
923
Tumor
0.1
447
Tumor
0.1
1021
Tumor
0.0
452
Normal
0.0
466
Normal
0.0
514
Normal
0.0
212
Normal
0.0
464
Normal
0.0
666
Normal
0.0
536
Normal
0.0
697
Tumor
0.0
1042
Normal
0.0
616
Normal
0.0
482
Normal
0.0
963
Tumor
0.0
722
Normal
0.0
564
Normal
0.0
922
Normal
0.0
283
Tumor
0.0
395
Tumor
0.0
228
Normal
0.0
627
Tumor
0.0
124
Normal
0.0
396
Normal
0.0
745
Tumor
0.0
491
Tumor
0.0
863
Tumor
0.0
528
Normal
0.0
312
Normal
0.0
432
Normal
0.0
488
Normal
0.0
864
Normal
0.0
284
Normal
0.0
926
Normal
0.0
695
Tumor
0.0
537
Tumor
-0.1
642
Normal
-0.1
474
Normal
-0.1
1025
Tumor
-0.1
665
Tumor
-0.1
425
Tumor
-0.1
878
Normal
-0.1
445
Tumor
-0.1
472
Normal
-0.1
231
Tumor
-0.1
937
Tumor
-0.1
943
Tumor
-0.1
755
Tumor
-0.1
392
Normal
-0.1
427
Tumor
-0.1
355
Tumor
-0.1
142
Normal
-0.1
357
Tumor
-0.1
426
Normal
-0.1
1045
Tumor
-0.1
685
Tumor
-0.1
423
Tumor
-0.1
141
Tumor
-0.1
957
Tumor
-0.1
628
Normal
-0.2
671
Tumor
-0.2
1028
Normal
-0.2
867
Tumor
-0.2
866
Normal
-0.2
428
Normal
-0.2
132
Normal
-0.2
125
Tumor
-0.2
1022
Normal
-0.2
388
Normal
-0.2
914
Normal
-0.2
446
Normal
-0.2
786
Normal
-0.2
391
Tumor
-0.2
572
Normal
-0.2
352
Normal
-0.2
271
Tumor
-0.2
615
Tumor
-0.2
756
Normal
-0.2
558
Normal
-0.2
136
Normal
-0.3
965
Tumor
-0.3
777
Tumor
-0.3
341
Tumor
-0.3
147
Tumor
-0.3
462
Normal
-0.3
698
Normal
-0.3
463
Tumor
-0.3
884
Normal
-0.3
818
Normal
-0.3
1027
Tumor
-0.3
877
Tumor
-0.3
414
Normal
-0.3
573
Tumor
-0.3
635
Tumor
-0.3
557
Tumor
-0.3
278
Normal
-0.3
394
Normal
-0.3
261
Tumor
-0.3
518
Normal
-0.3
1015
Tumor
-0.3
568
Normal
-0.3
257
Tumor
-0.3
534
Normal
-0.4
546
Normal
-0.4
431
Tumor
-0.4
481
Tumor
-0.4
127
Tumor
-0.4
641
Tumor
-0.4
527
Tumor
-0.4
868
Normal
-0.4
715
Tumor
-0.4
1014
Normal
-0.4
448
Normal
-0.4
953
Tumor
-0.4
1046
Normal
-0.4
952
Normal
-0.4
286
Normal
-0.4
111
Normal
-0.4
978
Normal
-0.4
956
Normal
-0.4
354
Normal
-0.4
411
Tumor
-0.4
724
Normal
-0.4
984
Normal
-0.4
1026
Normal
-0.5
114
Normal
-0.5
824
Normal
-0.5
816
Normal
-0.5
393
Tumor
-0.5
1041
Tumor
-0.5
862
Normal
-0.5
882
Normal
-0.5
873
Tumor
-0.5
161
Tumor
-0.5
497
Tumor
-0.5
1016
Normal
-0.5
487
Tumor
-0.5
571
Tumor
-0.6
227
Tumor
-0.6
298
Normal
-0.6
332
Normal
-0.6
436
Normal
-0.6
912
Normal
-0.6
314
Normal
-0.6
741
Tumor
-0.6
954
Normal
-0.6
981
Tumor
-0.6
128
Normal
-0.6
353
Tumor
-0.7
858
Normal
-0.7
526
Normal
-0.7
186
Normal
-0.7
778
Normal
-0.7
172
Normal
-0.7
342
Normal
-0.7
567
Tumor
-0.8
1013
Tumor
-0.8
131
Tumor
-0.8
648
Normal
-0.8
938
Normal
-0.8
277
Tumor
-0.8
148
Normal
-0.9
435
Tumor
-0.9
746
Normal
-0.9
951
Tumor
-0.9
944
Normal
-1.0
955
Tumor
-1.0
123
Tumor
-1.0
162
Normal
-1.0
358
Normal
-1.1
647
Tumor
-1.1
743
Tumor
-1.1
911
Tumor
-1.2
977
Tumor
-1.2
663
Tumor
-1.2
865
Tumor
-1.3
171
Tumor
-1.3
983
Tumor
-1.5
351
Tumor
-1.6
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.