HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.4 nTPM
HPA Brain:43.5 nTPM
GTEx:26.4 nTPM
FANTOM5:47.0 Scaled Tags Per Million
Pig:27.8 nTPM
Mouse:23.3 nTPM
Allen mouse:3.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 43.5
Sample id Sample description nTPM
Hippocampus
nTPM: 39.2
2529 Female, age 94, left hemisphere 45.8
1911 Female, age 85, right hemisphere 40.8
1898 Male, age 80, left hemisphere 39.1
1855 Male, age 76, left hemisphere 37.1
2621 Female, age 67, right hemisphere 36.4
2148 Female, age 91, left hemisphere 36.2
Dentate gyrus
nTPM: 37.9
2528 Male, age 74, both hemispheres 46.8
2010 Male, age 76, both hemispheres 45.6
2530 Female, age 94, left hemisphere 37.9
2246 Female, age 85, both hemispheres 34.9
2531 Female, age 67, both hemispheres 31.2
1927 Female, age 91, both hemispheres 30.9
Entorhinal gyrus
nTPM: 42.7
2117 Female, age 91, right hemisphere 51.8
1787 Male, age 76, left hemisphere 49.0
2764 Male, age 80, right hemisphere 47.9
1938 Female, age 85, left hemisphere 40.2
2686 Male, age 75, right hemisphere 34.0
2613 Female, age 94, left hemisphere 33.3
Hippocampus, CA1
nTPM: 39.2
2082 Female, age 91, right hemisphere 49.3
2045 Male, age 76, both hemispheres 42.6
2527 Male, age 74, both hemispheres 39.8
1873 Female, age 85, both hemispheres 38.9
2749 Male, age 80, left hemisphere 25.3
Hippocampus, CA2
nTPM: 41.1
2249 Male, age 74, both hemispheres 51.2
2113 Female, age 91, right hemisphere 44.8
1940 Female, age 85, left hemisphere 40.4
2437 Female, age 94, left hemisphere 40.0
1963 Male, age 80, left hemisphere 39.5
1892 Male, age 76, both hemispheres 30.7
Hippocampus, CA3
nTPM: 31.2
1891 Female, age 85, both hemispheres 40.4
1867 Male, age 76, both hemispheres 37.0
2436 Male, age 74, both hemispheres 35.7
2861 Female, age 67, both hemispheres 28.5
2620 Female, age 94, left hemisphere 26.7
2137 Male, age 80, left hemisphere 18.6
Parahippocampal cortex
nTPM: 39.2
2018 Male, age 76, both hemispheres 58.6
1990 Female, age 91, right hemisphere 42.1
2622 Female, age 67, right hemisphere 38.9
2532 Female, age 72, left hemisphere 38.7
2250 Female, age 67, right hemisphere 37.3
2245 Female, age 91, both hemispheres 36.6
1933 Female, age 85, both hemispheres 36.5
2692 Male, age 74, both hemispheres 36.0
1850 Male, age 80, both hemispheres 35.6
2693 Female, age 94, both hemispheres 31.6
Perirhinal gyrus
nTPM: 34.2
1794 Male, age 80, right hemisphere 39.5
2521 Female, age 94, right hemisphere 36.0
1847 Female, age 91, left hemisphere 33.7
1841 Female, age 85, right hemisphere 33.4
2848 Male, age 76, right hemisphere 28.6
Subiculum
nTPM: 43.5
2042 Male, age 76, both hemispheres 49.3
2619 Male, age 74, both hemispheres 46.9
1977 Female, age 85, both hemispheres 45.8
2729 Female, age 91, right hemisphere 45.3
1901 Male, age 80, both hemispheres 37.3
2438 Female, age 94, left hemisphere 36.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 26.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.4
Samples: 197

Max nTPM: 67.4
Min nTPM: 7.3
Std nTPM: 8.9
Median nTPM: 24.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 67.4
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 59.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 57.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 54.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 53.2
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 50.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 46.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 44.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 43.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 41.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 41.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 47.0
FF:10153-102I9 76 years, female 67.0
FF:10169-103B7 60 years, female 27.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 27.8
Pig sample Sample description nTPM
Subiculum
nTPM: 26.4
Samples: 4

Max nTPM: 31.0
Min nTPM: 21.1
Sample A Female 31.0
Sample B Female 27.6
Sample C Male 25.8
Sample D Male 21.1
Dorsal hippocampus
nTPM: 26.4
Samples: 4

Max nTPM: 29.0
Min nTPM: 20.8
Sample A Female 28.2
Sample B Female 27.6
Sample C Male 29.0
Sample D Male 20.8
Entorhinal cortex
nTPM: 25.8
Samples: 4

Max nTPM: 29.0
Min nTPM: 21.7
Sample A Female 26.4
Sample B Female 26.0
Sample C Male 29.0
Sample D Male 21.7
Ventral hippocampus
nTPM: 27.8
Samples: 4

Max nTPM: 35.0
Min nTPM: 23.8
Sample A Female 27.8
Sample B Female 24.5
Sample C Male 35.0
Sample D Male 23.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 23.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 22.7
Samples: 4

Max nTPM: 23.8
Min nTPM: 21.5
Sample A Male 23.8
Sample B Male 21.5
Sample C Female 23.6
Sample D Female 21.7
Hippocampal formation
nTPM: 23.3
Samples: 4

Max nTPM: 26.5
Min nTPM: 20.9
Sample A Male 22.1
Sample B Male 23.6
Sample C Female 20.9
Sample D Female 26.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.7
69014728 Antisense, RP_050310_01_F02, Mouse strain C57BL/6J (56 days, male) 3.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org