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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH3BP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
4.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH3BP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.7
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
77.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
535
Tumor
1.3
367
Tumor
1.3
661
Tumor
1.3
983
Tumor
1.2
331
Tumor
1.2
434
Normal
1.0
385
Tumor
0.9
951
Tumor
0.9
211
Tumor
0.9
536
Normal
0.8
671
Tumor
0.7
467
Tumor
0.7
492
Normal
0.7
285
Tumor
0.6
966
Normal
0.6
917
Tumor
0.6
724
Normal
0.6
262
Normal
0.6
1031
Tumor
0.6
444
Normal
0.6
851
Tumor
0.6
213
Tumor
0.5
978
Normal
0.5
721
Tumor
0.5
192
Normal
0.5
716
Normal
0.5
311
Tumor
0.5
126
Normal
0.5
943
Tumor
0.5
814
Normal
0.5
351
Tumor
0.5
224
Normal
0.5
384
Normal
0.4
383
Tumor
0.4
386
Normal
0.4
524
Normal
0.4
362
Normal
0.4
498
Normal
0.4
268
Normal
0.4
455
Tumor
0.4
975
Tumor
0.4
478
Normal
0.4
916
Normal
0.4
686
Normal
0.4
188
Normal
0.4
628
Normal
0.4
195
Tumor
0.4
421
Tumor
0.4
146
Normal
0.3
396
Normal
0.3
857
Tumor
0.3
366
Normal
0.3
391
Tumor
0.3
312
Normal
0.3
877
Tumor
0.3
217
Tumor
0.3
468
Normal
0.3
343
Tumor
0.3
447
Tumor
0.3
283
Tumor
0.3
952
Normal
0.3
563
Tumor
0.3
124
Normal
0.3
138
Normal
0.3
375
Tumor
0.3
914
Normal
0.3
976
Normal
0.3
823
Tumor
0.3
368
Normal
0.3
272
Normal
0.3
852
Normal
0.3
558
Normal
0.3
538
Normal
0.3
185
Tumor
0.2
881
Tumor
0.2
297
Tumor
0.2
212
Normal
0.2
743
Tumor
0.2
954
Normal
0.2
517
Tumor
0.2
432
Normal
0.2
984
Normal
0.2
963
Tumor
0.2
516
Normal
0.2
926
Normal
0.2
662
Normal
0.2
284
Normal
0.2
392
Normal
0.2
858
Normal
0.2
1028
Normal
0.2
574
Normal
0.2
394
Normal
0.2
141
Tumor
0.2
493
Tumor
0.2
861
Tumor
0.2
1044
Normal
0.2
491
Tumor
0.2
223
Tumor
0.2
958
Normal
0.1
968
Normal
0.1
221
Tumor
0.1
277
Tumor
0.1
388
Normal
0.1
332
Normal
0.1
471
Tumor
0.1
271
Tumor
0.1
395
Tumor
0.1
494
Normal
0.1
573
Tumor
0.1
956
Normal
0.1
352
Normal
0.1
874
Normal
0.1
136
Normal
0.1
413
Tumor
0.1
727
Tumor
0.1
446
Normal
0.1
1021
Tumor
0.1
142
Normal
0.1
816
Normal
0.1
666
Normal
0.1
463
Tumor
0.1
1016
Normal
0.1
1042
Normal
0.1
344
Normal
0.1
1043
Tumor
0.1
218
Normal
0.1
357
Tumor
0.1
341
Tumor
0.1
114
Normal
0.1
365
Tumor
0.1
967
Tumor
0.1
1015
Tumor
0.1
191
Tumor
0.1
286
Normal
0.0
664
Normal
0.0
938
Normal
0.0
672
Normal
0.0
424
Normal
0.0
278
Normal
0.0
518
Normal
0.0
461
Tumor
0.0
944
Normal
0.0
387
Tumor
0.0
214
Normal
0.0
817
Tumor
0.0
925
Tumor
0.0
918
Normal
0.0
364
Normal
0.0
111
Normal
0.0
921
Tumor
0.0
474
Normal
0.0
514
Normal
0.0
553
Tumor
0.0
545
Tumor
0.0
713
Tumor
0.0
258
Normal
0.0
884
Normal
0.0
756
Normal
0.0
728
Normal
0.0
412
Normal
0.0
172
Normal
0.0
786
Normal
0.0
883
Tumor
0.0
866
Normal
0.0
778
Normal
0.0
466
Normal
0.0
456
Normal
0.0
862
Normal
0.0
714
Normal
0.0
696
Normal
-0.1
1026
Normal
-0.1
922
Normal
-0.1
697
Tumor
-0.1
955
Tumor
-0.1
135
Tumor
-0.1
698
Normal
-0.1
528
Normal
-0.1
228
Normal
-0.1
815
Tumor
-0.1
913
Tumor
-0.1
641
Tumor
-0.1
354
Normal
-0.1
358
Normal
-0.1
868
Normal
-0.1
882
Normal
-0.1
415
Tumor
-0.1
525
Tumor
-0.1
416
Normal
-0.1
162
Normal
-0.1
356
Normal
-0.1
355
Tumor
-0.1
742
Normal
-0.1
526
Normal
-0.1
964
Normal
-0.1
196
Normal
-0.1
723
Tumor
-0.1
452
Normal
-0.1
738
Normal
-0.1
232
Normal
-0.1
131
Tumor
-0.1
564
Normal
-0.1
1014
Normal
-0.1
912
Normal
-0.1
1022
Normal
-0.1
231
Tumor
-0.1
125
Tumor
-0.1
867
Tumor
-0.1
572
Normal
-0.1
328
Normal
-0.1
363
Tumor
-0.1
864
Normal
-0.1
187
Tumor
-0.1
488
Normal
-0.1
722
Normal
-0.1
433
Tumor
-0.1
924
Normal
-0.1
376
Normal
-0.1
1046
Normal
-0.2
813
Tumor
-0.2
483
Tumor
-0.2
824
Normal
-0.2
132
Normal
-0.2
186
Normal
-0.2
137
Tumor
-0.2
1032
Normal
-0.2
161
Tumor
-0.2
464
Normal
-0.2
472
Normal
-0.2
145
Tumor
-0.2
422
Normal
-0.2
923
Tumor
-0.2
546
Normal
-0.2
568
Normal
-0.2
482
Normal
-0.2
982
Normal
-0.2
818
Normal
-0.2
148
Normal
-0.2
1045
Tumor
-0.2
451
Tumor
-0.2
393
Tumor
-0.2
462
Normal
-0.2
617
Tumor
-0.2
427
Tumor
-0.3
878
Normal
-0.3
448
Normal
-0.3
298
Normal
-0.3
222
Normal
-0.3
342
Normal
-0.3
534
Normal
-0.3
737
Tumor
-0.3
785
Tumor
-0.3
361
Tumor
-0.3
648
Normal
-0.3
428
Normal
-0.3
554
Normal
-0.3
414
Normal
-0.3
445
Tumor
-0.3
261
Tumor
-0.3
557
Tumor
-0.3
128
Normal
-0.3
744
Normal
-0.3
965
Tumor
-0.3
423
Tumor
-0.4
715
Tumor
-0.4
147
Tumor
-0.4
443
Tumor
-0.4
642
Normal
-0.4
616
Normal
-0.4
636
Normal
-0.4
567
Tumor
-0.4
314
Normal
-0.4
481
Tumor
-0.4
618
Normal
-0.4
957
Tumor
-0.4
755
Tumor
-0.4
665
Tumor
-0.4
1025
Tumor
-0.4
465
Tumor
-0.4
484
Normal
-0.4
537
Tumor
-0.5
627
Tumor
-0.5
436
Normal
-0.5
426
Normal
-0.5
953
Tumor
-0.5
571
Tumor
-0.5
523
Tumor
-0.5
267
Tumor
-0.5
663
Tumor
-0.5
746
Normal
-0.5
113
Tumor
-0.5
865
Tumor
-0.5
353
Tumor
-0.5
327
Tumor
-0.6
127
Tumor
-0.6
873
Tumor
-0.6
313
Tumor
-0.6
257
Tumor
-0.6
227
Tumor
-0.6
977
Tumor
-0.6
527
Tumor
-0.7
937
Tumor
-0.7
647
Tumor
-0.7
685
Tumor
-0.7
615
Tumor
-0.7
431
Tumor
-0.7
487
Tumor
-0.8
515
Tumor
-0.8
863
Tumor
-0.8
915
Tumor
-0.8
123
Tumor
-0.8
513
Tumor
-0.8
497
Tumor
-0.8
477
Tumor
-0.8
533
Tumor
-0.8
112
Tumor
-0.8
473
Tumor
-0.8
171
Tumor
-0.9
695
Tumor
-0.9
1013
Tumor
-0.9
981
Tumor
-1.0
1027
Tumor
-1.0
411
Tumor
-1.0
1041
Tumor
-1.0
435
Tumor
-1.1
635
Tumor
-1.1
911
Tumor
-1.1
777
Tumor
-1.2
425
Tumor
-1.2
745
Tumor
-1.3
741
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
