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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPIL2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPIL2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.4
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
79.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
75.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
55.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
45.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
45.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
35.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
33.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
33.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
32.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
31.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
30.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
30.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
30.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
29.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
28.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
28.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
27.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
27.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
25.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
25.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
24.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
23.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.4
463
Tumor
1.1
331
Tumor
0.9
357
Tumor
0.9
983
Tumor
0.8
517
Tumor
0.8
951
Tumor
0.7
965
Tumor
0.7
473
Tumor
0.7
967
Tumor
0.7
865
Tumor
0.7
497
Tumor
0.7
131
Tumor
0.7
877
Tumor
0.6
685
Tumor
0.6
715
Tumor
0.6
355
Tumor
0.6
351
Tumor
0.6
535
Tumor
0.6
815
Tumor
0.5
341
Tumor
0.5
465
Tumor
0.5
411
Tumor
0.5
943
Tumor
0.5
545
Tumor
0.5
727
Tumor
0.5
223
Tumor
0.5
445
Tumor
0.5
737
Tumor
0.5
921
Tumor
0.5
221
Tumor
0.5
1031
Tumor
0.5
1021
Tumor
0.5
271
Tumor
0.4
777
Tumor
0.4
443
Tumor
0.4
937
Tumor
0.4
277
Tumor
0.4
695
Tumor
0.4
425
Tumor
0.4
661
Tumor
0.4
724
Normal
0.4
647
Tumor
0.4
977
Tumor
0.4
755
Tumor
0.4
671
Tumor
0.4
363
Tumor
0.4
953
Tumor
0.4
523
Tumor
0.4
127
Tumor
0.4
112
Tumor
0.3
461
Tumor
0.3
553
Tumor
0.3
923
Tumor
0.3
873
Tumor
0.3
211
Tumor
0.3
413
Tumor
0.3
1027
Tumor
0.3
285
Tumor
0.3
975
Tumor
0.3
471
Tumor
0.3
515
Tumor
0.3
817
Tumor
0.3
881
Tumor
0.3
1045
Tumor
0.3
487
Tumor
0.3
481
Tumor
0.2
135
Tumor
0.2
883
Tumor
0.2
635
Tumor
0.2
785
Tumor
0.2
367
Tumor
0.2
641
Tumor
0.2
483
Tumor
0.2
525
Tumor
0.2
721
Tumor
0.2
955
Tumor
0.2
267
Tumor
0.2
513
Tumor
0.2
447
Tumor
0.2
365
Tumor
0.2
427
Tumor
0.2
141
Tumor
0.2
313
Tumor
0.1
327
Tumor
0.1
187
Tumor
0.1
426
Normal
0.1
665
Tumor
0.1
527
Tumor
0.1
455
Tumor
0.1
433
Tumor
0.1
814
Normal
0.1
478
Normal
0.1
451
Tumor
0.1
217
Tumor
0.1
493
Tumor
0.1
563
Tumor
0.1
171
Tumor
0.1
567
Tumor
0.1
113
Tumor
0.1
571
Tumor
0.1
387
Tumor
0.1
297
Tumor
0.1
414
Normal
0.1
863
Tumor
0.1
416
Normal
0.1
954
Normal
0.1
524
Normal
0.1
957
Tumor
0.1
925
Tumor
0.1
537
Tumor
0.1
161
Tumor
0.1
467
Tumor
0.1
261
Tumor
0.1
1041
Tumor
0.1
746
Normal
0.0
482
Normal
0.0
756
Normal
0.0
423
Tumor
0.0
492
Normal
0.0
818
Normal
0.0
431
Tumor
0.0
422
Normal
0.0
518
Normal
0.0
1015
Tumor
0.0
786
Normal
0.0
981
Tumor
0.0
874
Normal
0.0
536
Normal
0.0
436
Normal
0.0
224
Normal
0.0
498
Normal
0.0
851
Tumor
0.0
533
Tumor
0.0
446
Normal
0.0
966
Normal
0.0
696
Normal
0.0
147
Tumor
0.0
385
Tumor
0.0
123
Tumor
0.0
878
Normal
0.0
944
Normal
0.0
952
Normal
0.0
472
Normal
0.0
286
Normal
0.0
713
Tumor
0.0
956
Normal
0.0
858
Normal
0.0
913
Tumor
0.0
1044
Normal
0.0
516
Normal
0.0
421
Tumor
0.0
648
Normal
0.0
824
Normal
0.0
466
Normal
0.0
738
Normal
0.0
714
Normal
0.0
938
Normal
0.0
558
Normal
0.0
778
Normal
0.0
484
Normal
0.0
328
Normal
0.0
911
Tumor
-0.1
395
Tumor
-0.1
816
Normal
-0.1
1014
Normal
-0.1
415
Tumor
-0.1
393
Tumor
-0.1
922
Normal
-0.1
456
Normal
-0.1
362
Normal
-0.1
376
Normal
-0.1
978
Normal
-0.1
137
Tumor
-0.1
142
Normal
-0.1
366
Normal
-0.1
428
Normal
-0.1
861
Tumor
-0.1
412
Normal
-0.1
361
Tumor
-0.1
813
Tumor
-0.1
722
Normal
-0.1
916
Normal
-0.1
434
Normal
-0.1
111
Normal
-0.1
383
Tumor
-0.1
188
Normal
-0.1
368
Normal
-0.1
1013
Tumor
-0.1
126
Normal
-0.1
353
Tumor
-0.1
424
Normal
-0.1
864
Normal
-0.1
924
Normal
-0.1
462
Normal
-0.1
866
Normal
-0.1
663
Tumor
-0.1
222
Normal
-0.1
857
Tumor
-0.1
915
Tumor
-0.1
284
Normal
-0.1
262
Normal
-0.1
212
Normal
-0.1
1028
Normal
-0.1
364
Normal
-0.1
1016
Normal
-0.1
228
Normal
-0.1
538
Normal
-0.1
884
Normal
-0.1
352
Normal
-0.1
852
Normal
-0.1
882
Normal
-0.1
716
Normal
-0.1
984
Normal
-0.1
918
Normal
-0.1
666
Normal
-0.1
185
Tumor
-0.1
464
Normal
-0.1
554
Normal
-0.1
218
Normal
-0.1
968
Normal
-0.1
388
Normal
-0.2
514
Normal
-0.2
258
Normal
-0.2
728
Normal
-0.2
1042
Normal
-0.2
1026
Normal
-0.2
1046
Normal
-0.2
283
Tumor
-0.2
1022
Normal
-0.2
354
Normal
-0.2
672
Normal
-0.2
114
Normal
-0.2
474
Normal
-0.2
448
Normal
-0.2
444
Normal
-0.2
148
Normal
-0.2
546
Normal
-0.2
572
Normal
-0.2
862
Normal
-0.2
574
Normal
-0.2
192
Normal
-0.2
268
Normal
-0.2
868
Normal
-0.2
312
Normal
-0.2
384
Normal
-0.2
391
Tumor
-0.2
573
Tumor
-0.2
311
Tumor
-0.2
191
Tumor
-0.2
662
Normal
-0.2
494
Normal
-0.2
128
Normal
-0.2
186
Normal
-0.2
982
Normal
-0.2
528
Normal
-0.2
976
Normal
-0.2
146
Normal
-0.2
1025
Tumor
-0.2
342
Normal
-0.2
823
Tumor
-0.2
557
Tumor
-0.2
132
Normal
-0.2
488
Normal
-0.2
468
Normal
-0.2
356
Normal
-0.2
477
Tumor
-0.2
272
Normal
-0.2
698
Normal
-0.2
432
Normal
-0.2
298
Normal
-0.2
964
Normal
-0.2
145
Tumor
-0.2
314
Normal
-0.2
742
Normal
-0.2
564
Normal
-0.2
386
Normal
-0.2
912
Normal
-0.2
138
Normal
-0.2
396
Normal
-0.2
618
Normal
-0.2
1043
Tumor
-0.2
124
Normal
-0.2
435
Tumor
-0.2
232
Normal
-0.2
664
Normal
-0.2
744
Normal
-0.3
136
Normal
-0.3
195
Tumor
-0.3
926
Normal
-0.3
358
Normal
-0.3
526
Normal
-0.3
214
Normal
-0.3
917
Tumor
-0.3
958
Normal
-0.3
278
Normal
-0.3
1032
Normal
-0.3
392
Normal
-0.3
172
Normal
-0.3
213
Tumor
-0.3
963
Tumor
-0.3
642
Normal
-0.3
686
Normal
-0.3
332
Normal
-0.3
628
Normal
-0.3
162
Normal
-0.3
617
Tumor
-0.3
568
Normal
-0.3
196
Normal
-0.3
636
Normal
-0.3
394
Normal
-0.3
452
Normal
-0.3
615
Tumor
-0.3
491
Tumor
-0.3
867
Tumor
-0.4
257
Tumor
-0.4
227
Tumor
-0.4
723
Tumor
-0.4
343
Tumor
-0.4
344
Normal
-0.4
914
Normal
-0.4
534
Normal
-0.4
375
Tumor
-0.5
231
Tumor
-0.5
745
Tumor
-0.5
125
Tumor
-0.6
616
Normal
-0.6
697
Tumor
-0.7
741
Tumor
-0.7
627
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
