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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC14L2 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
51.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
512.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
348.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
317.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
308.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
264.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
260.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
249.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
241.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
240.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
238.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
230.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
223.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
218.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
215.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
207.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
204.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
194.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
192.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
179.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
174.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
174.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
173.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
168.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
167.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
156.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
155.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
154.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
151.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
151.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
149.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
146.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
146.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
141.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
140.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
139.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
138.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
137.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
135.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
128.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
126.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
126.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
124.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
123.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
112.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
112.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
109.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
106.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
105.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
97.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
97.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
97.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
95.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
93.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
92.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
91.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
90.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
90.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
89.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
89.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
89.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
88.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
86.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
84.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
82.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
82.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
81.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
79.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
79.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
77.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
75.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
74.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
74.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
74.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
73.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
73.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
73.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
72.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
71.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
71.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
70.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
70.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
70.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
69.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
67.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
64.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
64.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
64.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
64.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
64.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
63.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
63.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
62.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
61.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
61.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
61.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
61.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
60.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
60.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
59.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
59.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
59.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
58.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
58.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
58.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
58.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
57.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
57.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
57.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
57.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
56.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
56.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
56.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
55.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
54.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
54.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
53.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
51.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
51.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
51.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
50.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
50.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
49.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
49.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
49.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
48.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
47.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
47.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
46.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
46.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
46.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
46.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
45.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
45.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
44.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
43.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
42.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
41.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
41.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
41.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
40.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
40.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
39.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
39.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
39.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
38.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
38.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
38.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
37.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
36.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
36.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
36.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
36.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
35.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
34.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
34.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
34.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
34.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
33.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
33.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
33.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
33.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
33.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
32.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
32.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
30.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
30.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
29.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
27.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
23.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
23.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
20.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
15.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC14L2 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.1
Number of samples
231
Samples
Sample
Description
TPM
DO45125
0 years, male, NA, stage:3, alive, 1680 days
302.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
236.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
220.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
165.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
157.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
149.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
141.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
133.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
132.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
130.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
128.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
125.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
120.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
114.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
114.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
111.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
111.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
110.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
108.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
102.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
102.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
100.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
100.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
95.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
93.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
93.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
92.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
92.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
92.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
91.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
89.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
88.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
88.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
86.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
86.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
83.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
82.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
81.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
79.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
74.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
74.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
72.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
72.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
72.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
70.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
69.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
68.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
68.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
66.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
66.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
66.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
66.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
64.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
62.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
60.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
59.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
59.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
59.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
58.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
57.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
56.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
55.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
55.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
55.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
54.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
54.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
53.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
53.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
52.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
52.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
48.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
48.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
47.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
47.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
47.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
46.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
45.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
44.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
43.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
42.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
42.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
42.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
42.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
40.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
38.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
37.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
36.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
36.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
36.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
36.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
35.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
35.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
34.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
34.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
34.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
33.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
33.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
32.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
31.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
28.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
28.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
27.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
26.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
26.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
25.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
24.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
742
Normal
1.1
981
Tumor
1.1
915
Tumor
1.1
436
Normal
1.0
615
Tumor
0.9
698
Normal
0.9
938
Normal
0.9
128
Normal
0.9
862
Normal
0.9
746
Normal
0.9
171
Tumor
0.8
484
Normal
0.8
1046
Normal
0.8
867
Tumor
0.8
464
Normal
0.8
132
Normal
0.8
911
Tumor
0.8
298
Normal
0.8
648
Normal
0.8
342
Normal
0.7
222
Normal
0.7
452
Normal
0.7
723
Tumor
0.7
356
Normal
0.7
196
Normal
0.7
1026
Normal
0.7
685
Tumor
0.7
878
Normal
0.7
388
Normal
0.7
714
Normal
0.7
258
Normal
0.7
286
Normal
0.7
448
Normal
0.7
618
Normal
0.6
426
Normal
0.6
534
Normal
0.6
366
Normal
0.6
111
Normal
0.6
924
Normal
0.6
955
Tumor
0.6
515
Tumor
0.6
914
Normal
0.6
412
Normal
0.6
738
Normal
0.6
882
Normal
0.6
824
Normal
0.6
481
Tumor
0.6
261
Tumor
0.6
664
Normal
0.6
568
Normal
0.6
866
Normal
0.6
423
Tumor
0.6
462
Normal
0.6
416
Normal
0.6
482
Normal
0.6
662
Normal
0.6
278
Normal
0.6
472
Normal
0.6
424
Normal
0.6
332
Normal
0.6
272
Normal
0.6
186
Normal
0.6
414
Normal
0.5
428
Normal
0.5
858
Normal
0.5
432
Normal
0.5
148
Normal
0.5
422
Normal
0.5
376
Normal
0.5
162
Normal
0.5
212
Normal
0.5
744
Normal
0.5
546
Normal
0.5
756
Normal
0.5
466
Normal
0.5
172
Normal
0.5
518
Normal
0.5
956
Normal
0.5
864
Normal
0.5
314
Normal
0.5
136
Normal
0.5
114
Normal
0.5
616
Normal
0.5
396
Normal
0.5
358
Normal
0.5
786
Normal
0.5
1016
Normal
0.5
564
Normal
0.5
214
Normal
0.5
474
Normal
0.4
728
Normal
0.4
716
Normal
0.4
365
Tumor
0.4
666
Normal
0.4
642
Normal
0.4
446
Normal
0.4
456
Normal
0.4
964
Normal
0.4
1022
Normal
0.4
468
Normal
0.4
696
Normal
0.4
922
Normal
0.4
526
Normal
0.4
868
Normal
0.4
918
Normal
0.4
944
Normal
0.4
312
Normal
0.4
513
Tumor
0.4
394
Normal
0.4
516
Normal
0.4
982
Normal
0.4
488
Normal
0.4
262
Normal
0.4
362
Normal
0.3
952
Normal
0.3
968
Normal
0.3
1032
Normal
0.3
228
Normal
0.3
1028
Normal
0.3
232
Normal
0.3
1045
Tumor
0.3
1042
Normal
0.3
328
Normal
0.3
126
Normal
0.3
494
Normal
0.3
284
Normal
0.3
912
Normal
0.3
926
Normal
0.3
574
Normal
0.3
451
Tumor
0.3
1014
Normal
0.3
818
Normal
0.3
628
Normal
0.3
785
Tumor
0.3
958
Normal
0.3
636
Normal
0.3
966
Normal
0.2
354
Normal
0.2
138
Normal
0.2
142
Normal
0.2
874
Normal
0.2
465
Tumor
0.2
572
Normal
0.2
1027
Tumor
0.2
976
Normal
0.2
368
Normal
0.2
188
Normal
0.2
884
Normal
0.2
741
Tumor
0.2
146
Normal
0.2
364
Normal
0.2
268
Normal
0.2
686
Normal
0.2
816
Normal
0.2
627
Tumor
0.1
722
Normal
0.1
514
Normal
0.1
433
Tumor
0.1
393
Tumor
0.1
554
Normal
0.1
954
Normal
0.1
778
Normal
0.1
386
Normal
0.1
1044
Normal
0.1
435
Tumor
0.1
558
Normal
0.1
978
Normal
0.1
124
Normal
0.0
852
Normal
0.0
224
Normal
0.0
916
Normal
0.0
352
Normal
0.0
434
Normal
0.0
384
Normal
0.0
444
Normal
0.0
528
Normal
0.0
392
Normal
0.0
1041
Tumor
0.0
267
Tumor
-0.1
1015
Tumor
-0.1
218
Normal
-0.1
112
Tumor
-0.1
861
Tumor
-0.1
344
Normal
-0.1
147
Tumor
-0.1
123
Tumor
-0.2
745
Tumor
-0.2
857
Tumor
-0.2
984
Normal
-0.2
755
Tumor
-0.2
445
Tumor
-0.2
137
Tumor
-0.2
327
Tumor
-0.3
357
Tumor
-0.3
977
Tumor
-0.3
257
Tumor
-0.3
477
Tumor
-0.3
231
Tumor
-0.3
127
Tumor
-0.3
353
Tumor
-0.3
492
Normal
-0.3
672
Normal
-0.4
715
Tumor
-0.4
461
Tumor
-0.4
415
Tumor
-0.4
571
Tumor
-0.4
538
Normal
-0.4
145
Tumor
-0.5
873
Tumor
-0.5
478
Normal
-0.5
185
Tumor
-0.5
727
Tumor
-0.5
195
Tumor
-0.5
498
Normal
-0.5
192
Normal
-0.5
695
Tumor
-0.5
665
Tumor
-0.5
213
Tumor
-0.5
361
Tumor
-0.6
141
Tumor
-0.6
524
Normal
-0.6
217
Tumor
-0.6
431
Tumor
-0.7
823
Tumor
-0.7
187
Tumor
-0.8
953
Tumor
-0.8
536
Normal
-0.8
483
Tumor
-0.8
341
Tumor
-0.8
863
Tumor
-0.8
721
Tumor
-0.8
277
Tumor
-0.9
421
Tumor
-0.9
113
Tumor
-0.9
777
Tumor
-0.9
557
Tumor
-0.9
1013
Tumor
-0.9
493
Tumor
-0.9
663
Tumor
-0.9
1043
Tumor
-0.9
814
Normal
-1.0
443
Tumor
-1.0
161
Tumor
-1.0
447
Tumor
-1.0
737
Tumor
-1.0
943
Tumor
-1.0
533
Tumor
-1.1
963
Tumor
-1.1
563
Tumor
-1.1
647
Tumor
-1.1
487
Tumor
-1.1
425
Tumor
-1.1
567
Tumor
-1.1
191
Tumor
-1.1
883
Tumor
-1.1
635
Tumor
-1.2
865
Tumor
-1.2
913
Tumor
-1.2
271
Tumor
-1.2
355
Tumor
-1.2
313
Tumor
-1.2
1025
Tumor
-1.3
491
Tumor
-1.3
375
Tumor
-1.3
923
Tumor
-1.3
813
Tumor
-1.3
881
Tumor
-1.4
427
Tumor
-1.4
297
Tumor
-1.4
383
Tumor
-1.4
411
Tumor
-1.4
713
Tumor
-1.4
617
Tumor
-1.4
937
Tumor
-1.4
517
Tumor
-1.4
363
Tumor
-1.4
925
Tumor
-1.4
523
Tumor
-1.5
227
Tumor
-1.5
223
Tumor
-1.5
391
Tumor
-1.5
921
Tumor
-1.5
467
Tumor
-1.5
917
Tumor
-1.5
975
Tumor
-1.5
125
Tumor
-1.5
463
Tumor
-1.6
525
Tumor
-1.6
331
Tumor
-1.6
967
Tumor
-1.6
283
Tumor
-1.6
221
Tumor
-1.6
957
Tumor
-1.6
413
Tumor
-1.6
387
Tumor
-1.7
724
Normal
-1.7
983
Tumor
-1.7
877
Tumor
-1.7
395
Tumor
-1.7
367
Tumor
-1.7
473
Tumor
-1.7
545
Tumor
-1.7
311
Tumor
-1.8
851
Tumor
-1.8
527
Tumor
-1.8
641
Tumor
-1.8
965
Tumor
-1.8
471
Tumor
-1.8
343
Tumor
-1.8
135
Tumor
-1.9
1031
Tumor
-1.9
285
Tumor
-1.9
697
Tumor
-1.9
671
Tumor
-1.9
497
Tumor
-1.9
553
Tumor
-2.0
131
Tumor
-2.0
815
Tumor
-2.0
573
Tumor
-2.0
1021
Tumor
-2.0
537
Tumor
-2.1
455
Tumor
-2.1
211
Tumor
-2.1
817
Tumor
-2.1
351
Tumor
-2.1
951
Tumor
-2.2
385
Tumor
-2.3
535
Tumor
-2.4
661
Tumor
-2.4
743
Tumor
-2.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
