BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:24.1 nTPM
HPA Brain:54.6 nTPM
GTEx:24.1 nTPM
FANTOM5:20.2 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:33.4 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003422
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 54.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 48.7
2289 Male, age 61, right hemisphere 55.4
2290 Female, age 72, unknown 54.2
2846 Female, age 79, unknown 52.9
1781 Male, age 74, unknown 50.4
2288 Male, age 75, left hemisphere 49.9
1854 Male, age 80, left hemisphere 44.0
1857 Female, age 85, left hemisphere 43.6
2481 Female, age 94, left hemisphere 39.0
Globus pallidus, externus
nTPM: 48.6
2567 Female, age 72, unknown 60.0
2646 Male, age 61, right hemisphere 59.3
2772 Female, age 79, unknown 41.8
1996 Male, age 80, right hemisphere 41.5
2395 Male, age 75, both hemispheres 40.4
Globus pallidus, internus
nTPM: 45.0
2111 Female, age 85, right hemisphere 53.5
2566 Female, age 72, unknown 50.6
2778 Female, age 91, both hemispheres 45.3
1818 Male, age 74, unknown 44.3
2037 Male, age 80, right hemisphere 43.0
2287 Male, age 75, right hemisphere 40.3
2483 Female, age 94, right hemisphere 38.1
Nucleus accumbens
nTPM: 42.4
1783 Male, age 74, unknown 51.6
2286 Male, age 75, left hemisphere 44.2
2824 Male, age 61, right hemisphere 43.5
1806 Female, age 85, left hemisphere 41.1
2698 Female, age 72, unknown 41.1
2391 Female, age 94, left hemisphere 40.3
2732 Male, age 80, right hemisphere 39.9
1856 Female, age 91, right hemisphere 37.5
Nucleus basalis of Meynert
nTPM: 48.5
2569 Male, age 61, both hemispheres 57.9
2484 Female, age 94, left hemisphere 49.6
2821 Male, age 75, both hemispheres 45.6
2393 Male, age 80, right hemisphere 41.0
Nucleus of the diagonal band
nTPM: 48.2
2029 Male, age 61, right hemisphere 64.3
2195 Female, age 85, both hemispheres 50.2
2775 Male, age 80, right hemisphere 44.0
1979 Male, age 74, unknown 41.9
1812 Female, age 91, both hemispheres 40.7
Putamen
nTPM: 54.6
2489 Female, age 72, unknown 69.0
2647 Male, age 75, left hemisphere 62.9
2466 Female, age 79, unknown 61.8
1829 Male, age 74, unknown 59.0
1937 Female, age 91, right hemisphere 43.6
1838 Male, age 80, right hemisphere 42.8
2482 Female, age 94, left hemisphere 42.7
Septal nuclei
nTPM: 48.3
2031 Female, age 72, unknown 53.7
1960 Male, age 74, unknown 52.5
2394 Male, age 61, left hemisphere 52.1
2059 Female, age 85, both hemispheres 50.8
2629 Female, age 94, right hemisphere 46.5
2009 Female, age 91, both hemispheres 42.0
2199 Male, age 80, right hemisphere 40.6
Stria terminalis, bed nucleus
nTPM: 47.1
2486 Female, age 94, both hemispheres 52.2
2201 Male, age 74, unknown 48.0
1974 Female, age 91, both hemispheres 41.1

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 24.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.4
Samples: 246

Max nTPM: 37.7
Min nTPM: 9.0
Std nTPM: 5.0
Median nTPM: 23.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 37.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 36.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 35.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 33.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 32.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 32.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 32.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 32.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 31.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 31.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 31.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.2
Samples: 246

Max nTPM: 30.1
Min nTPM: 9.3
Std nTPM: 3.8
Median nTPM: 21.5
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 30.1
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 29.8
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 29.2
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 28.7
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 28.4
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 28.2
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 28.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 28.0
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 27.9
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 27.7
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 27.6
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Brain - Putamen (basal ganglia)
Average nTPM: 24.1
Samples: 205

Max nTPM: 34.5
Min nTPM: 12.7
Std nTPM: 4.3
Median nTPM: 24.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 34.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 34.5
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 34.0
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 33.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 32.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 32.1
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 31.6
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 31.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 31.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 31.4
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 31.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 15.1
FF:10164-103B2 76 years, female 15.1
Nucleus accumbens
Scaled Tags Per Million: 20.2
FF:10037-101F1 23-56 years, mixed 20.2
Putamen
Scaled Tags Per Million: 14.2
FF:10176-103C5 60 years, female 14.2
Globus pallidus
Scaled Tags Per Million: 15.3
FF:10161-103A8 76 years, female 18.8
FF:10175-103C4 60 years, female 11.7

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 15.7
Pig sample Sample description nTPM
Caudate
nTPM: 14.3
Samples: 4

Max nTPM: 16.8
Min nTPM: 12.1
Sample A Female 12.1
Sample B Female 15.3
Sample C Male 16.8
Sample D Male 13.1
Putamen
nTPM: 12.3
Samples: 4

Max nTPM: 16.3
Min nTPM: 9.6
Sample A Female 12.2
Sample B Female 9.6
Sample C Male 11.1
Sample D Male 16.3
Septum
nTPM: 14.4
Samples: 4

Max nTPM: 17.4
Min nTPM: 13.1
Sample A Female 13.1
Sample B Female 13.7
Sample C Male 17.4
Sample D Male 13.3
Ventral pallidum
nTPM: 15.7
Samples: 4

Max nTPM: 23.5
Min nTPM: 10.0
Sample A Female 10.0
Sample B Female 14.7
Sample C Male 23.5
Sample D Male 14.4

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 33.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 23.0
Samples: 4

Max nTPM: 33.9
Min nTPM: 15.9
Sample A Male 24.4
Sample B Male 33.9
Sample C Female 15.9
Sample D Female 17.9
Septum
nTPM: 22.4
Samples: 4

Max nTPM: 28.9
Min nTPM: 17.0
Sample A Male 28.9
Sample B Male 24.6
Sample C Female 19.1
Sample D Female 17.0
Ventral forebrain
nTPM: 33.5
Samples: 4

Max nTPM: 42.7
Min nTPM: 25.0
Sample A Male 42.7
Sample B Male 25.0
Sample C Female 37.7
Sample D Female 28.4

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
71211359 Antisense, RP_050816_01_D01, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.3
71211359 Antisense, RP_050816_01_D01, Mouse strain C57BL/6J (56 days, male) 0.3

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