MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.4 nTPM
HPA Brain:86.5 nTPM
GTEx:22.4 nTPM
FANTOM5:116.1 Scaled Tags Per Million
Pig:23.7 nTPM
Mouse:10.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 86.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.5
2586 Male, age 75, left hemisphere 157.7
2828 Female, age 72, unknown 100.8
2666 Male, age 74, left hemisphere 91.8
2019 Male, age 18, unknown 88.9
2219 Male, age 76, both hemispheres 84.0
1870 Female, age 42, unknown 70.7
1830 Male, age 51, unknown 69.5
1833 Male, age 53, unknown 69.1
1827 Male, age 72, unknown 66.6
2411 Female, age 72, unknown 65.9
Dorsal raphe nucleus
nTPM: 76.3
2016 Female, age 72, unknown 104.5
1828 Male, age 53, unknown 71.4
2298 Female, age 72, unknown 71.2
2047 Male, age 72, unknown 69.7
2750 Male, age 76, both hemispheres 64.6
Inferior colliculus
nTPM: 68.7
1890 Male, age 53, unknown 78.6
2849 Male, age 72, unknown 75.1
1848 Female, age 42, unknown 66.5
2097 Female, age 72, unknown 54.4
Median raphe nucleus
nTPM: 62.6
2220 Male, age 76, midline 62.6
Periaquaductal grey, anterior
nTPM: 84.6
1795 Male, age 51, unknown 96.0
1947 Male, age 18, unknown 82.7
2502 Female, age 75, unknown 75.1
Periaquaductal grey, dorsal
nTPM: 76.4
1831 Male, age 72, unknown 82.4
2850 Male, age 76, both hemispheres 81.5
1840 Male, age 53, unknown 72.2
2464 Female, age 72, unknown 69.8
Periaquaductal grey, lateral
nTPM: 79.0
2140 Male, age 76, both hemispheres 95.0
2272 Male, age 74, both hemispheres 72.5
2053 Male, age 18, unknown 69.6
Pretectal area
nTPM: 79.1
2667 Female, age 75, unknown 95.6
2007 Male, age 72, unknown 91.1
1817 Female, age 42, unknown 84.5
2407 Male, age 75, both hemispheres 82.9
1944 Female, age 72, unknown 80.7
1815 Male, age 53, unknown 79.4
2316 Male, age 76, right hemisphere 74.3
1816 Male, age 51, unknown 73.1
2224 Female, age 72, unknown 72.3
2273 Male, age 74, both hemispheres 69.3
2825 Male, age 18, unknown 66.5
Red nucleus
nTPM: 81.4
2769 Male, age 72, unknown 97.3
2584 Male, age 75, left hemisphere 95.3
2785 Male, age 18, unknown 92.5
2227 Male, age 72, unknown 85.8
1904 Male, age 53, unknown 84.3
2588 Male, age 74, left hemisphere 84.2
1954 Female, age 42, unknown 80.7
1865 Male, age 51, unknown 80.2
2503 Female, age 72, unknown 73.7
1821 Female, age 72, unknown 71.7
2725 Female, age 75, unknown 66.0
2823 Male, age 76, right hemisphere 65.4
Substantia nigra
nTPM: 79.9
2665 Male, age 74, both hemispheres 99.7
2583 Male, age 75, right hemisphere 97.1
1851 Male, age 51, unknown 90.4
2699 Male, age 18, unknown 88.0
2590 Female, age 75, unknown 84.5
1916 Female, age 42, unknown 78.0
2409 Female, age 72, unknown 71.2
1889 Female, age 72, unknown 68.0
1941 Male, age 53, unknown 65.4
2241 Male, age 72, unknown 56.4
Superior colliculus
nTPM: 82.2
2664 Male, age 75, both hemispheres 119.3
1796 Male, age 53, unknown 103.7
1995 Male, age 72, unknown 85.5
2668 Female, age 75, unknown 84.5
1913 Female, age 42, unknown 81.8
2261 Male, age 18, unknown 79.8
2587 Male, age 74, left hemisphere 70.3
1839 Male, age 51, unknown 69.7
2087 Female, age 72, unknown 69.5
1895 Male, age 76, right hemisphere 57.5
Ventral tegmental area
nTPM: 67.8
1942 Male, age 51, unknown 77.2
1915 Female, age 42, unknown 75.1
2021 Male, age 53, unknown 69.3
2410 Female, age 72, unknown 68.1
2218 Male, age 76, both hemispheres 59.7
2223 Female, age 72, unknown 57.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.4
Samples: 139

Max nTPM: 305.2
Min nTPM: 1.0
Std nTPM: 38.5
Median nTPM: 12.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 305.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 272.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 159.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 116.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 103.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 96.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 90.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 55.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 53.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 50.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 44.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 116.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 116.1
FF:10158-103A5 76 years, female 116.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.6
Samples: 4

Max nTPM: 20.6
Min nTPM: 12.7
Sample A Female 14.9
Sample B Female 20.6
Sample C Male 12.7
Sample D Male 14.2
Midbrain
nTPM: 13.3
Samples: 4

Max nTPM: 15.8
Min nTPM: 10.1
Sample A Female 15.5
Sample B Female 10.1
Sample C Male 15.8
Sample D Male 11.8
Periaqueductal gray
nTPM: 11.3
Samples: 3

Max nTPM: 12.3
Min nTPM: 9.5
Sample B Female 9.5
Sample C Male 12.3
Sample D Male 12.1
Superior colliculi
nTPM: 23.7
Samples: 4

Max nTPM: 48.7
Min nTPM: 12.9
Sample A Female 19.1
Sample B Female 48.7
Sample C Male 12.9
Sample D Male 14.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 13.2
Min nTPM: 8.9
Sample A Male 13.2
Sample B Male 8.9
Sample C Female 9.4
Sample D Female 11.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
74821702 Antisense, RP_060321_02_C04, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org