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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ATP5F1D is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
149.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
724.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
546.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
470.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
449.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
441.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
431.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
413.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
388.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
386.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
384.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
371.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
367.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
362.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
351.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
325.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
313.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
304.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
299.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
298.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
298.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
288.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
286.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
284.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
280.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
275.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
272.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
270.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
270.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
269.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
267.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
260.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
258.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
250.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
249.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
247.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
244.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
239.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
238.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
238.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
237.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
230.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
228.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
223.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
222.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
221.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
220.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
218.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
217.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
215.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
213.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
213.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
211.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
210.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
209.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
207.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
206.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
205.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
205.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
200.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
198.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
197.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
196.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
196.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
196.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
195.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
192.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
190.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
189.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
186.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
186.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
185.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
185.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
185.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
183.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
183.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
182.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
182.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
181.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
180.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
179.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
178.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
178.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
178.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
178.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
177.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
176.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
176.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
174.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
174.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
174.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
174.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
173.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
173.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
172.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
171.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
170.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
170.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
170.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
169.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
169.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
168.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
168.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
168.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
166.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
166.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
164.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
163.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
163.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
163.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
162.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
162.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
162.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
161.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
161.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
161.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
160.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
160.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
160.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
159.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
158.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
157.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
156.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
155.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
154.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
154.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
154.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
154.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
153.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
152.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
152.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
151.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
151.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
149.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
149.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
149.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
148.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
148.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
148.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
148.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
148.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
148.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
147.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
147.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
147.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
147.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
147.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
146.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
146.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
146.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
145.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
145.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
144.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
142.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
141.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
141.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
140.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
140.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
139.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
139.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
137.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
137.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
137.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
137.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
136.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
136.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
135.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
135.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
134.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
134.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
134.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
133.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
133.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
132.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
132.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
132.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
131.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
131.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
130.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
129.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
129.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
129.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
129.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
129.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
129.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
128.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
128.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
128.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
128.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
127.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
127.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
127.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
127.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
127.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
126.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
126.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
126.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
125.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
125.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
125.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
124.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
123.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
123.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
123.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
123.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
123.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
122.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
121.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
121.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
120.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
120.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
119.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
119.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
118.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
118.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
118.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
117.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
116.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
116.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
116.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
116.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
115.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
115.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
115.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
115.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
115.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
114.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
114.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
113.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
113.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
113.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
113.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
112.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
112.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
112.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
112.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
111.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
110.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
110.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
109.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
109.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
109.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
109.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
108.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
108.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
108.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
108.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
108.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
107.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
107.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
107.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
107.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
106.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
106.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
105.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
105.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
105.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
104.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
104.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
104.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
103.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
102.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
102.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
102.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
102.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
101.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
101.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
99.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
99.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
99.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
99.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
99.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
98.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
98.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
98.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
98.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
98.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
97.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
97.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
97.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
97.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
97.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
97.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
96.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
96.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
96.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
95.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
95.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
95.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
94.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
92.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
92.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
92.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
92.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
92.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
92.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
91.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
90.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
89.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
87.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
87.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
87.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
87.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
87.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
87.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
86.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
86.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
85.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
85.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
85.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
85.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
84.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
84.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
84.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
83.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
83.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
81.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
81.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
81.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
81.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
80.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
79.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
78.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
78.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
77.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
76.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
76.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
76.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
75.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
73.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
72.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
72.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
72.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
72.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
70.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
70.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
70.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
70.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
69.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
68.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
68.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
67.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
64.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
64.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
63.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
59.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
59.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
59.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
57.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
56.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
56.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
53.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
53.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
53.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
53.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
52.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
51.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
51.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
50.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
46.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
45.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
40.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
2.0
571
Tumor
1.0
452
Normal
1.0
278
Normal
0.9
636
Normal
0.9
388
Normal
0.9
648
Normal
0.8
615
Tumor
0.8
227
Tumor
0.8
394
Normal
0.8
222
Normal
0.8
172
Normal
0.8
426
Normal
0.8
361
Tumor
0.8
666
Normal
0.8
314
Normal
0.8
446
Normal
0.8
436
Normal
0.8
258
Normal
0.8
366
Normal
0.8
365
Tumor
0.8
186
Normal
0.7
358
Normal
0.7
423
Tumor
0.7
162
Normal
0.7
664
Normal
0.7
465
Tumor
0.7
114
Normal
0.7
534
Normal
0.7
332
Normal
0.7
232
Normal
0.7
468
Normal
0.7
424
Normal
0.7
328
Normal
0.7
722
Normal
0.7
111
Normal
0.7
298
Normal
0.7
618
Normal
0.7
396
Normal
0.7
488
Normal
0.6
428
Normal
0.6
196
Normal
0.6
124
Normal
0.6
368
Normal
0.6
464
Normal
0.6
342
Normal
0.6
112
Tumor
0.6
392
Normal
0.6
376
Normal
0.6
662
Normal
0.6
214
Normal
0.6
564
Normal
0.6
628
Normal
0.6
414
Normal
0.6
218
Normal
0.6
432
Normal
0.6
344
Normal
0.6
698
Normal
0.6
132
Normal
0.6
713
Tumor
0.6
635
Tumor
0.6
148
Normal
0.5
456
Normal
0.5
128
Normal
0.5
443
Tumor
0.5
1043
Tumor
0.5
714
Normal
0.5
642
Normal
0.5
786
Normal
0.5
422
Normal
0.5
386
Normal
0.5
113
Tumor
0.5
912
Normal
0.5
126
Normal
0.5
462
Normal
0.5
217
Tumor
0.5
362
Normal
0.5
444
Normal
0.5
268
Normal
0.5
393
Tumor
0.5
616
Normal
0.5
354
Normal
0.5
448
Normal
0.5
257
Tumor
0.5
568
Normal
0.5
272
Normal
0.4
1032
Normal
0.4
136
Normal
0.4
138
Normal
0.4
1046
Normal
0.4
451
Tumor
0.4
188
Normal
0.4
982
Normal
0.4
672
Normal
0.4
312
Normal
0.4
1014
Normal
0.4
546
Normal
0.4
434
Normal
0.4
742
Normal
0.4
746
Normal
0.4
528
Normal
0.4
924
Normal
0.4
574
Normal
0.4
964
Normal
0.4
868
Normal
0.4
484
Normal
0.4
944
Normal
0.4
922
Normal
0.4
1026
Normal
0.4
262
Normal
0.4
958
Normal
0.4
862
Normal
0.4
938
Normal
0.4
192
Normal
0.4
723
Tumor
0.4
466
Normal
0.4
1045
Tumor
0.4
884
Normal
0.4
882
Normal
0.4
384
Normal
0.3
738
Normal
0.3
1016
Normal
0.3
914
Normal
0.3
756
Normal
0.3
513
Tumor
0.3
926
Normal
0.3
745
Tumor
0.3
967
Tumor
0.3
686
Normal
0.3
231
Tumor
0.3
433
Tumor
0.3
954
Normal
0.3
267
Tumor
0.3
286
Normal
0.3
984
Normal
0.3
864
Normal
0.3
146
Normal
0.3
427
Tumor
0.3
191
Tumor
0.3
482
Normal
0.3
356
Normal
0.3
878
Normal
0.3
515
Tumor
0.3
313
Tumor
0.3
1025
Tumor
0.3
1042
Normal
0.3
1044
Normal
0.3
352
Normal
0.3
145
Tumor
0.3
665
Tumor
0.3
911
Tumor
0.3
538
Normal
0.2
866
Normal
0.2
978
Normal
0.2
127
Tumor
0.2
925
Tumor
0.2
353
Tumor
0.2
364
Normal
0.2
537
Tumor
0.2
1027
Tumor
0.2
716
Normal
0.2
195
Tumor
0.2
228
Normal
0.2
923
Tumor
0.2
1022
Normal
0.2
518
Normal
0.2
563
Tumor
0.2
976
Normal
0.2
284
Normal
0.2
696
Normal
0.2
744
Normal
0.2
918
Normal
0.2
277
Tumor
0.2
221
Tumor
0.2
421
Tumor
0.2
968
Normal
0.2
472
Normal
0.2
952
Normal
0.2
416
Normal
0.2
818
Normal
0.2
494
Normal
0.1
981
Tumor
0.1
213
Tumor
0.1
357
Tumor
0.1
461
Tumor
0.1
467
Tumor
0.1
916
Normal
0.1
383
Tumor
0.1
641
Tumor
0.1
212
Normal
0.1
125
Tumor
0.1
412
Normal
0.1
341
Tumor
0.1
955
Tumor
0.1
728
Normal
0.1
137
Tumor
0.1
135
Tumor
0.1
297
Tumor
0.1
567
Tumor
0.1
498
Normal
0.1
956
Normal
0.1
824
Normal
0.1
463
Tumor
0.1
663
Tumor
0.1
161
Tumor
0.1
743
Tumor
0.1
858
Normal
0.1
514
Normal
0.1
966
Normal
0.1
741
Tumor
0.1
187
Tumor
0.1
413
Tumor
0.1
387
Tumor
0.1
874
Normal
0.1
516
Normal
0.1
1041
Tumor
0.1
554
Normal
0.0
171
Tumor
0.0
953
Tumor
0.0
557
Tumor
0.0
483
Tumor
0.0
411
Tumor
0.0
224
Normal
0.0
474
Normal
0.0
435
Tumor
0.0
142
Normal
0.0
367
Tumor
0.0
572
Normal
0.0
778
Normal
0.0
271
Tumor
0.0
785
Tumor
0.0
487
Tumor
0.0
863
Tumor
0.0
727
Tumor
0.0
391
Tumor
0.0
185
Tumor
0.0
697
Tumor
-0.1
481
Tumor
-0.1
331
Tumor
-0.1
867
Tumor
-0.1
695
Tumor
-0.1
526
Normal
-0.1
1028
Normal
-0.1
527
Tumor
-0.1
492
Normal
-0.1
558
Normal
-0.1
431
Tumor
-0.1
816
Normal
-0.1
1013
Tumor
-0.1
395
Tumor
-0.1
553
Tumor
-0.1
223
Tumor
-0.1
617
Tumor
-0.1
915
Tumor
-0.1
385
Tumor
-0.1
573
Tumor
-0.1
937
Tumor
-0.1
375
Tumor
-0.1
141
Tumor
-0.1
737
Tumor
-0.1
883
Tumor
-0.2
536
Normal
-0.2
755
Tumor
-0.2
445
Tumor
-0.2
873
Tumor
-0.2
777
Tumor
-0.2
721
Tumor
-0.2
261
Tumor
-0.2
147
Tumor
-0.2
814
Normal
-0.2
425
Tumor
-0.2
524
Normal
-0.2
517
Tumor
-0.2
823
Tumor
-0.2
671
Tumor
-0.3
913
Tumor
-0.3
661
Tumor
-0.3
921
Tumor
-0.3
123
Tumor
-0.3
415
Tumor
-0.3
525
Tumor
-0.3
852
Normal
-0.3
1031
Tumor
-0.3
343
Tumor
-0.3
491
Tumor
-0.3
363
Tumor
-0.3
523
Tumor
-0.3
478
Normal
-0.3
327
Tumor
-0.4
533
Tumor
-0.4
813
Tumor
-0.4
647
Tumor
-0.4
957
Tumor
-0.4
535
Tumor
-0.5
311
Tumor
-0.5
351
Tumor
-0.5
881
Tumor
-0.5
447
Tumor
-0.5
857
Tumor
-0.5
951
Tumor
-0.5
975
Tumor
-0.5
851
Tumor
-0.5
477
Tumor
-0.5
815
Tumor
-0.6
724
Normal
-0.6
455
Tumor
-0.6
1015
Tumor
-0.6
715
Tumor
-0.6
685
Tumor
-0.6
977
Tumor
-0.6
943
Tumor
-0.7
497
Tumor
-0.7
963
Tumor
-0.7
877
Tumor
-0.7
493
Tumor
-0.7
285
Tumor
-0.7
917
Tumor
-0.7
471
Tumor
-0.7
983
Tumor
-0.7
473
Tumor
-0.7
1021
Tumor
-0.7
861
Tumor
-0.7
355
Tumor
-0.8
131
Tumor
-0.8
817
Tumor
-0.8
865
Tumor
-0.8
211
Tumor
-0.9
965
Tumor
-1.0
545
Tumor
-1.1
283
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.