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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MYO9B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
79.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
70.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
54.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
48.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
48.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
46.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
46.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
44.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
43.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
42.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
40.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
36.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
36.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
35.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
33.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
32.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
31.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
31.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
30.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
30.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
30.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
30.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
29.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
28.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
28.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
28.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
28.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
27.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
27.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
27.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
26.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
26.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
26.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
26.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
25.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
25.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
25.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
24.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
24.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
23.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
22.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
21.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
17.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
17.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MYO9B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.3
Number of samples
231
Samples
Sample
Description
TPM
DO23547
0 years, male, NA, stage:1, alive, 1020 days
54.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
48.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
35.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.1
661
Tumor
0.9
391
Tumor
0.7
724
Normal
0.7
525
Tumor
0.7
311
Tumor
0.6
913
Tumor
0.5
943
Tumor
0.5
851
Tumor
0.5
455
Tumor
0.5
283
Tumor
0.5
713
Tumor
0.5
917
Tumor
0.4
434
Normal
0.4
343
Tumor
0.4
461
Tumor
0.4
447
Tumor
0.4
536
Normal
0.4
231
Tumor
0.4
297
Tumor
0.4
963
Tumor
0.4
125
Tumor
0.4
535
Tumor
0.4
697
Tumor
0.4
863
Tumor
0.3
444
Normal
0.3
492
Normal
0.3
363
Tumor
0.3
671
Tumor
0.3
467
Tumor
0.3
865
Tumor
0.3
563
Tumor
0.3
524
Normal
0.3
375
Tumor
0.3
573
Tumor
0.3
267
Tumor
0.3
463
Tumor
0.3
367
Tumor
0.3
385
Tumor
0.3
721
Tumor
0.3
383
Tumor
0.3
223
Tumor
0.3
213
Tumor
0.3
415
Tumor
0.3
123
Tumor
0.3
663
Tumor
0.3
881
Tumor
0.3
883
Tumor
0.3
478
Normal
0.3
965
Tumor
0.3
925
Tumor
0.3
813
Tumor
0.3
1015
Tumor
0.3
571
Tumor
0.3
141
Tumor
0.3
861
Tumor
0.3
814
Normal
0.3
857
Tumor
0.3
365
Tumor
0.3
545
Tumor
0.3
617
Tumor
0.3
224
Normal
0.3
435
Tumor
0.3
978
Normal
0.3
271
Tumor
0.3
413
Tumor
0.2
498
Normal
0.2
285
Tumor
0.2
1045
Tumor
0.2
268
Normal
0.2
966
Normal
0.2
665
Tumor
0.2
277
Tumor
0.2
262
Normal
0.2
715
Tumor
0.2
915
Tumor
0.2
421
Tumor
0.2
916
Normal
0.2
493
Tumor
0.2
867
Tumor
0.2
217
Tumor
0.2
192
Normal
0.2
923
Tumor
0.2
817
Tumor
0.2
188
Normal
0.2
491
Tumor
0.2
384
Normal
0.2
967
Tumor
0.2
567
Tumor
0.2
427
Tumor
0.2
823
Tumor
0.1
145
Tumor
0.1
187
Tumor
0.1
975
Tumor
0.1
124
Normal
0.1
921
Tumor
0.1
538
Normal
0.1
641
Tumor
0.1
126
Normal
0.1
983
Tumor
0.1
451
Tumor
0.1
533
Tumor
0.1
465
Tumor
0.1
362
Normal
0.1
146
Normal
0.1
353
Tumor
0.1
423
Tumor
0.1
527
Tumor
0.1
954
Normal
0.1
914
Normal
0.1
516
Normal
0.1
737
Tumor
0.1
952
Normal
0.1
686
Normal
0.1
877
Tumor
0.1
212
Normal
0.1
628
Normal
0.1
1042
Normal
0.1
1031
Tumor
0.1
716
Normal
0.1
161
Tumor
0.1
312
Normal
0.1
445
Tumor
0.1
745
Tumor
0.1
284
Normal
0.1
926
Normal
0.1
191
Tumor
0.1
185
Tumor
0.1
873
Tumor
0.1
135
Tumor
0.1
662
Normal
0.1
433
Tumor
0.1
424
Normal
0.1
221
Tumor
0.1
497
Tumor
0.1
852
Normal
0.1
195
Tumor
0.1
422
Normal
0.1
113
Tumor
0.1
468
Normal
0.1
272
Normal
0.1
514
Normal
0.1
1044
Normal
0.1
574
Normal
0.0
977
Tumor
0.0
1043
Tumor
0.0
386
Normal
0.0
558
Normal
0.0
414
Normal
0.0
1021
Tumor
0.0
537
Tumor
0.0
425
Tumor
0.0
518
Normal
0.0
138
Normal
0.0
473
Tumor
0.0
976
Normal
0.0
1046
Normal
0.0
951
Tumor
0.0
1028
Normal
0.0
368
Normal
0.0
714
Normal
0.0
366
Normal
0.0
428
Normal
0.0
884
Normal
0.0
526
Normal
0.0
528
Normal
0.0
432
Normal
0.0
918
Normal
0.0
956
Normal
0.0
332
Normal
0.0
483
Tumor
0.0
352
Normal
0.0
142
Normal
0.0
642
Normal
0.0
515
Tumor
0.0
396
Normal
0.0
364
Normal
0.0
615
Tumor
0.0
937
Tumor
0.0
331
Tumor
0.0
672
Normal
0.0
392
Normal
0.0
286
Normal
0.0
261
Tumor
0.0
981
Tumor
0.0
416
Normal
0.0
1016
Normal
0.0
616
Normal
0.0
666
Normal
0.0
984
Normal
0.0
456
Normal
0.0
354
Normal
0.0
955
Tumor
0.0
958
Normal
0.0
137
Tumor
0.0
785
Tumor
0.0
494
Normal
0.0
964
Normal
0.0
722
Normal
0.0
968
Normal
0.0
815
Tumor
0.0
488
Normal
0.0
278
Normal
0.0
114
Normal
0.0
1026
Normal
0.0
618
Normal
0.0
696
Normal
0.0
944
Normal
0.0
636
Normal
0.0
1013
Tumor
0.0
481
Tumor
-0.1
924
Normal
-0.1
344
Normal
-0.1
664
Normal
-0.1
553
Tumor
-0.1
738
Normal
-0.1
218
Normal
-0.1
874
Normal
-0.1
554
Normal
-0.1
953
Tumor
-0.1
557
Tumor
-0.1
446
Normal
-0.1
1022
Normal
-0.1
912
Normal
-0.1
395
Tumor
-0.1
911
Tumor
-0.1
1032
Normal
-0.1
471
Tumor
-0.1
922
Normal
-0.1
858
Normal
-0.1
474
Normal
-0.1
568
Normal
-0.1
328
Normal
-0.1
376
Normal
-0.1
314
Normal
-0.1
147
Tumor
-0.1
131
Tumor
-0.1
298
Normal
-0.1
431
Tumor
-0.1
778
Normal
-0.1
816
Normal
-0.1
564
Normal
-0.1
388
Normal
-0.1
258
Normal
-0.1
818
Normal
-0.1
412
Normal
-0.1
546
Normal
-0.1
1014
Normal
-0.1
436
Normal
-0.1
426
Normal
-0.1
232
Normal
-0.1
647
Tumor
-0.1
443
Tumor
-0.1
572
Normal
-0.1
777
Tumor
-0.1
111
Normal
-0.1
394
Normal
-0.1
227
Tumor
-0.1
728
Normal
-0.1
214
Normal
-0.1
136
Normal
-0.1
868
Normal
-0.1
132
Normal
-0.1
627
Tumor
-0.1
356
Normal
-0.1
878
Normal
-0.1
938
Normal
-0.1
723
Tumor
-0.1
534
Normal
-0.1
513
Tumor
-0.1
866
Normal
-0.1
342
Normal
-0.1
357
Tumor
-0.1
358
Normal
-0.1
982
Normal
-0.1
882
Normal
-0.1
744
Normal
-0.1
466
Normal
-0.1
864
Normal
-0.1
228
Normal
-0.1
685
Tumor
-0.1
743
Tumor
-0.1
355
Tumor
-0.1
128
Normal
-0.1
756
Normal
-0.2
452
Normal
-0.2
448
Normal
-0.2
472
Normal
-0.2
648
Normal
-0.2
112
Tumor
-0.2
464
Normal
-0.2
361
Tumor
-0.2
482
Normal
-0.2
742
Normal
-0.2
741
Tumor
-0.2
786
Normal
-0.2
824
Normal
-0.2
698
Normal
-0.2
127
Tumor
-0.2
484
Normal
-0.2
327
Tumor
-0.2
341
Tumor
-0.2
462
Normal
-0.2
196
Normal
-0.2
387
Tumor
-0.2
1025
Tumor
-0.2
727
Tumor
-0.2
523
Tumor
-0.2
1041
Tumor
-0.2
351
Tumor
-0.2
862
Normal
-0.2
746
Normal
-0.2
162
Normal
-0.3
172
Normal
-0.3
186
Normal
-0.3
148
Normal
-0.3
222
Normal
-0.3
635
Tumor
-0.3
171
Tumor
-0.3
411
Tumor
-0.3
477
Tumor
-0.3
393
Tumor
-0.3
487
Tumor
-0.4
755
Tumor
-0.4
313
Tumor
-0.4
517
Tumor
-0.5
257
Tumor
-0.5
695
Tumor
-0.5
957
Tumor
-0.6
1027
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
